Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,957,092 |
+CC |
intergenic (+26/+58) |
ilvC → / ← ppiC |
ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,957,091 | 1 | . | C | 92.7%
| 316.3
/ 22.2
| 124 | intergenic (+25/+59) | ilvC/ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Reads supporting (aligned to +/- strand): ref base . (1/8); new base C (6/109); total (7/117) |
| Fisher's exact test for biased strand distribution p-value = 4.18e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
| * | NC_000913 | 3,957,091 | 2 | . | C | 92.7%
| 316.7
/ 22.2
| 124 | intergenic (+25/+59) | ilvC/ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Reads supporting (aligned to +/- strand): ref base . (1/8); new base C (6/109); total (7/117) |
| Fisher's exact test for biased strand distribution p-value = 4.18e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 140 total aligned reads displayed.
TGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑A‑‑CTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGAT > NC_000913/3957000‑3957181
||
tGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑GCCTCACCCCC‑‑A‑‑c > 2:967532/1‑93 (MQ=255)
aGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑A‑‑ccc < 2:4870648/93‑3 (MQ=255)
aGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑A‑‑ccc < 1:890466/93‑3 (MQ=255)
gtaggtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑A‑‑Ccctctcc < 1:5534039/93‑4 (MQ=255)
taggtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑A‑‑Ccctcttcc > 1:948497/1‑89 (MQ=255)
taggtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑A‑‑Ccctctccc < 1:2185780/93‑5 (MQ=255)
ggtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑TCCTCCCCCCC‑‑A‑‑Ccccccccccc > 1:5980518/1‑89 (MQ=255)
gtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCcaca < 1:4563454/93‑1 (MQ=38)
gtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCcaca < 2:6325208/93‑1 (MQ=38)
gtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCcaca < 1:1613579/93‑1 (MQ=38)
gtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCcaca < 1:1578221/93‑1 (MQ=38)
taAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACag < 2:6163005/93‑1 (MQ=37)
taAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACag < 2:2839121/93‑1 (MQ=37)
aaGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACagg < 2:3942289/93‑1 (MQ=37)
aaGAAACTGCGCGGCTATATAACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACagg < 1:5418277/93‑1 (MQ=37)
aGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCGCCC‑‑CTCTCCCACaggg > 2:5311683/1‑93 (MQ=37)
gAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACaggga < 1:1019551/93‑1 (MQ=37)
aaaCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACagggag < 2:5843813/93‑1 (MQ=37)
aCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACagggaga‑g < 1:3107619/93‑1 (MQ=37)
aCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACagggaga‑g < 1:348973/93‑1 (MQ=37)
cTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACagggaga‑gg < 1:6284170/93‑1 (MQ=25)
tGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACagggaga‑ggg < 1:1887118/93‑1 (MQ=25)
gcgcGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCCCCCCCCCCC‑‑C‑‑CCCTCCCACagggagc‑gggg > 2:4096026/1‑92 (MQ=25)
gcgcGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACagggaga‑ggga < 2:2470570/93‑1 (MQ=25)
cgcgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACagggaga‑gggag < 2:305627/93‑1 (MQ=25)
gCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACCGGGGGA‑GGGGGaaaa > 2:3233250/1‑93 (MQ=21)
gCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGaaaa < 1:4261766/93‑1 (MQ=21)
tataTGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGGGAAAaca > 2:928827/1‑93 (MQ=21)
atatGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAacac < 1:3202831/93‑1 (MQ=21)
tatGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑t < 1:3529121/93‑1 (MQ=21)
tatGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑t < 1:955439/93‑1 (MQ=21)
atGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATC‑‑CCCTCCCCCCGCCC‑‑CTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑c < 2:1169208/93‑1 (MQ=21)
tGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑a < 1:5277891/93‑1 (MQ=21)
tGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑a < 2:3295560/93‑1 (MQ=21)
aCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AA‑g < 2:4377297/93‑1 (MQ=21)
gATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AA‑ggcc < 1:4012728/93‑4 (MQ=21)
gATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AA‑ggcc < 1:4121677/93‑4 (MQ=21)
atatGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCGCCC‑‑CTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AA‑ggcct < 1:2712250/93‑5 (MQ=18)
atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTtc < 2:4637564/93‑1 (MQ=18)
tGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTtct < 2:2232779/93‑1 (MQ=18)
tGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTtct < 1:588495/93‑1 (MQ=18)
tGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTtct < 2:218482/93‑1 (MQ=18)
gAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑GCCCCCCCCCC‑‑ACCCCCTCCCCCAGGGAGG‑GGGGGGAAAAACAC‑C‑AA‑GCCTtctc > 2:4178203/1‑93 (MQ=255)
aagcGTATTGCTGTGGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTcc < 2:1960768/90‑1 (MQ=18)
aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTcc < 1:3022892/93‑1 (MQ=18)
aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTcc < 2:2733762/93‑1 (MQ=18)
aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTcc < 1:3984888/93‑1 (MQ=18)
aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTcc < 1:5310967/93‑1 (MQ=18)
aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTcc < 1:1327263/93‑1 (MQ=18)
agcGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCt < 2:4410208/91‑1 (MQ=18)
aaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCt < 2:6190842/93‑1 (MQ=18)
aaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCt < 1:5917352/93‑1 (MQ=18)
aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTg < 2:5499573/93‑1 (MQ=18)
aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTg < 2:4211012/93‑1 (MQ=18)
aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTg < 2:1435860/93‑1 (MQ=18)
gTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGga < 2:5986190/93‑1 (MQ=18)
gTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGga < 2:4782149/93‑1 (MQ=18)
gTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGga < 1:5484173/93‑1 (MQ=18)
aTTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGgaga < 1:3421703/93‑1 (MQ=18)
ttGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGGAGaa < 1:1757764/93‑1 (MQ=18)
ttGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGGAGaa < 2:5058074/93‑1 (MQ=18)
ttGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGGAGaa < 1:45248/93‑1 (MQ=18)
tGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGGAGAAGGcc < 2:6393634/93‑1 (MQ=18)
tGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGGAGAAGGcc < 2:4117111/93‑1 (MQ=18)
gTTGCGGGTTAAGTGCGCGCTGATGGCCCCCCCCCCCC‑‑C‑‑CCCTCCCCCCCGGGGAGGGGGGAAAAAAA‑C‑C‑AA‑GGCTTCTCCTCGAGAAGGGCt > 2:5095223/1‑93 (MQ=255)
gTTGCGGGTTAAGTGCGCGCTGATG‑‑CTCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGGAGAAGGCCt < 2:5221560/93‑1 (MQ=18)
gTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGGAGAAGGCCt < 1:1140833/93‑1 (MQ=18)
gTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGGAGAAGGCCt < 2:2025285/93‑1 (MQ=18)
gTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGGAGAAGGCCt < 1:820226/93‑1 (MQ=18)
ttGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGGAGAAGGCCtt < 2:1560783/93‑1 (MQ=18)
gCGGGTTAAGTGCGCGCTGATG‑‑CCCTCGCCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGc < 1:2344461/93‑1 (MQ=18)
gCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGc < 1:5582866/93‑1 (MQ=18)
gCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGc < 2:1535608/93‑1 (MQ=18)
gggTTAAGTGCGCGCTGATG‑‑CCCTCACCCCC‑‑ACCCTCTCCCCCCCGGGGA‑GGGGGGAAAAAC‑T‑CAAA‑GCCTTCTCCTGGAGAAGGCCGTGcgt > 2:850446/1‑91 (MQ=12)
gTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTAtt < 1:3864462/93‑1 (MQ=18)
ttAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTa < 1:3425523/93‑1 (MQ=18)
tAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAg < 1:4126664/93‑1 (MQ=18)
tAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAg < 2:5399158/93‑1 (MQ=18)
aaGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGt < 2:4665057/93‑1 (MQ=18)
aGTGCGCGCTGAGG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 2:2885792/93‑1 (MQ=18)
tGCGCGCTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGc < 1:3651496/93‑1 (MQ=21)
gcgcgcTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCg < 2:5120853/93‑1 (MQ=21)
cgcgcTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCgg < 1:4034041/93‑1 (MQ=21)
cgcgcTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCgg < 1:2334389/93‑1 (MQ=21)
gcgcTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGt < 2:1051163/93‑1 (MQ=21)
cTGATG‑‑CGCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACa < 2:6140104/93‑1 (MQ=21)
cTGATG‑‑CCCTCCCCCCGCCC‑‑CTCGCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACa < 1:4865562/93‑1 (MQ=21)
cTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCCCAGGGGGA‑GGGGGAAAACAC‑T‑CAAA‑GGCTTCTCCTGGAGAAAGCCCTGCTATTAGTTGCGGGACa > 2:3142893/1‑93 (MQ=16)
cTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑CAAA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACa > 2:6441636/1‑93 (MQ=21)
cTGATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACa < 1:2622233/93‑1 (MQ=21)
gATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGc < 1:3389565/93‑1 (MQ=25)
gATG‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGc < 1:4527920/93‑1 (MQ=25)
tG‑‑CCCTCACCCCG‑‑ACCCCCTCCCCCAGGGAGA‑GGGGGAAAAAAC‑TCC‑AA‑GCCTTCTCCTGGAGAAGGCCCTGCTATTAGTTGCGGTACAGCAc > 2:4926501/1‑93 (MQ=255)
g‑‑CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCAcc < 2:2351151/93‑1 (MQ=25)
cccTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCt < 2:1826725/93‑1 (MQ=25)
cccTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCt < 1:495022/93‑1 (MQ=25)
tCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTaa < 2:756151/93‑1 (MQ=37)
tCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTaa < 1:872638/93‑1 (MQ=37)
tCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGGAGAAGGACTTGCTATTAGTTGCGGTACAGCACCTTaa > 2:6021183/1‑93 (MQ=25)
cACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAat < 2:4218741/93‑1 (MQ=37)
||
TGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACCCCG‑‑A‑‑CTCTCCCACAGGGAGA‑GGGAGAAAACAC‑T‑C‑AA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGAT > NC_000913/3957000‑3957181
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATC > NC_000913/3957002‑3957184
|
AGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CCCT < SRR4302537.896597/94‑1 (MQ=60)
GTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCC < SRR4302537.4566340/94‑1 (MQ=60)
GTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCC < SRR4302537.5571813/94‑1 (MQ=60)
GTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑Ccctcttcc > SRR4302537.955058/1‑86 (MQ=60)
TAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCA < SRR4302537.2201179/94‑1 (MQ=60)
AGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCAC < SRR4302537.4151284/94‑1 (MQ=60)
GGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACA < SRR4302537.4079069/94‑1 (MQ=60)
GTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAG < SRR4302537.1589250/94‑1 (MQ=60)
GTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAG < SRR4302537.1624855/94‑1 (MQ=60)
GTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAG < SRR4302537.4595042/94‑1 (MQ=60)
AAGAAACTGCGCGGCTATATAACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGG < SRR4302537.5455209/94‑1 (MQ=60)
GAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAG < SRR4302537.1026576/94‑1 (MQ=60)
ACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGGGAGG > SRR4302537.3285767/1‑94 (MQ=60)
ACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGG < SRR4302537.351397/94‑1 (MQ=60)
ACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGG < SRR4302537.3129321/94‑1 (MQ=60)
CTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGG < SRR4302537.6327257/94‑1 (MQ=60)
TGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGA < SRR4302537.1900239/94‑1 (MQ=60)
GGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCC‑‑ACCCCCTCCCCCCGGGAGAGGGAGAAAA > SRR4302537.736409/1‑94 (MQ=60)
GCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC < SRR4302537.4291380/94‑1 (MQ=60)
ATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACT < SRR4302537.3225347/94‑1 (MQ=60)
TATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC < SRR4302537.5957717/94‑1 (MQ=60)
TATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC < SRR4302537.962030/94‑1 (MQ=60)
TATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC < SRR4302537.3554077/94‑1 (MQ=60)
TATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC < SRR4302537.2320124/94‑1 (MQ=60)
TGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAA < SRR4302537.5314205/94‑1 (MQ=60)
ACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑GG < SRR4302537.893513/94‑1 (MQ=60)
AGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑Ggcc < SRR4302537.1754571/94‑4 (MQ=60)
AGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑Ggcc < SRR4302537.1382320/94‑4 (MQ=60)
GATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCT < SRR4302537.4150451/94‑1 (MQ=60)
GATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCT < SRR4302537.4040827/94‑1 (MQ=60)
ATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGCCC‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTT < SRR4302537.2731192/94‑1 (MQ=57)
ATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTT < SRR4302537.4031443/94‑1 (MQ=60)
ATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCT < SRR4302537.2582970/94‑1 (MQ=60)
TGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTC < SRR4302537.592511/94‑1 (MQ=60)
AAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCT < SRR4302537.5347450/94‑1 (MQ=60)
AAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCT < SRR4302537.4012788/94‑1 (MQ=60)
AAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCT < SRR4302537.1336518/94‑1 (MQ=60)
AAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCT < SRR4302537.3043963/94‑1 (MQ=60)
AACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTG < SRR4302537.5957955/94‑1 (MQ=60)
ACGTATTGCTTGTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGG < SRR4302537.4411433/94‑1 (MQ=37)
GTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAG < SRR4302537.5521611/94‑1 (MQ=60)
ATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAA < SRR4302537.3445920/94‑1 (MQ=60)
TTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAG < SRR4302537.1770017/94‑1 (MQ=60)
TTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAG < SRR4302537.45586/94‑1 (MQ=60)
GTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTT < SRR4302537.3047162/94‑1 (MQ=60)
GTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTT < SRR4302537.825857/94‑1 (MQ=60)
GTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTT < SRR4302537.1148758/94‑1 (MQ=60)
TTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTG < SRR4302537.5042156/94‑1 (MQ=60)
GCGGGTTAAGTGCGCGCTGATGCCCTCGCCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCT < SRR4302537.2360972/94‑1 (MQ=60)
GCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCT < SRR4302537.5621029/94‑1 (MQ=60)
GTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTA < SRR4302537.3891514/94‑1 (MQ=60)
TTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAG < SRR4302537.3449771/94‑1 (MQ=60)
GTAAGTGCGCGCTGATGCCCTCCCCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAG < SRR4302537.5600966/94‑1 (MQ=57)
TAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGT < SRR4302537.4155467/94‑1 (MQ=60)
TGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCG < SRR4302537.3677202/94‑1 (MQ=60)
CGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGT < SRR4302537.2350842/94‑1 (MQ=60)
CGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGT < SRR4302537.4062276/94‑1 (MQ=60)
CGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTAC < SRR4302537.5386233/94‑1 (MQ=60)
CTGATGCCCTCCCCCCGCCC‑‑CTCGCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAG < SRR4302537.4899134/94‑1 (MQ=60)
CTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAG < SRR4302537.2640608/94‑1 (MQ=60)
GATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCA < SRR4302537.3413574/94‑1 (MQ=60)
GATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCA < SRR4302537.4559272/94‑1 (MQ=60)
TGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACC < SRR4302537.3504934/94‑1 (MQ=60)
CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTT < SRR4302537.498429/94‑1 (MQ=60)
TCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT < SRR4302537.878639/94‑1 (MQ=60)
CACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATG < SRR4302537.3655888/94‑1 (MQ=60)
ACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGA > SRR4302537.4269380/1‑94 (MQ=60)
ACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGA > SRR4302537.3819242/1‑94 (MQ=60)
CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGAT < SRR4302537.4751761/94‑1 (MQ=60)
cccccgaccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGA < SRR4302537.136976/85‑1 (MQ=60)
CCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATG > SRR4302537.2597752/1‑94 (MQ=60)
CCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATG < SRR4302537.6210404/94‑1 (MQ=60)
CCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATG > SRR4302537.3223157/1‑94 (MQ=60)
ccccgcccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGAT < SRR4302537.5513037/86‑1 (MQ=60)
CCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGT < SRR4302537.1003817/94‑1 (MQ=60)
CCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGT < SRR4302537.4107555/94‑1 (MQ=60)
ccgcccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGT < SRR4302537.1190623/88‑1 (MQ=60)
cgaccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTG < SRR4302537.5763625/89‑1 (MQ=60)
cgaccCTCTCCCACAGGGAGAGGGAGAAAAAACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTG > SRR4302537.2194005/6‑94 (MQ=60)
gaccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGA > SRR4302537.3244426/5‑94 (MQ=60)
gaccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGA > SRR4302537.4852543/5‑94 (MQ=60)
accCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGAT > SRR4302537.3384178/4‑94 (MQ=60)
C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATAT < SRR4302537.487163/94‑1 (MQ=60)
ccCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATA > SRR4302537.1287206/3‑94 (MQ=60)
CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATC > SRR4302537.2026767/1‑94 (MQ=60)
CTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATC < SRR4302537.3788529/94‑1 (MQ=60)
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AGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTCAA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATC > NC_000913/3957002‑3957184
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
