Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 744 338.8 17650688 97.8% 17262372 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,675,076 +G coding (920/2076 nt) yhjG ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,675,0721.G98.6% 1224.6 / 6.2 360coding (924/2076 nt)yhjGhypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (3/2);  new base G (182/173);  total (185/175)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.59e-01

Only 100 of 415 total aligned reads displayed.

TCACCAATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑GG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCC  >  NC_000913/3674980‑3675159
                                                                                             |                                                                                         
tCACCAATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAAcggc                                                                                            <  2:7321892/93‑1 (MQ=255)
tCACCAATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAAcggc                                                                                            <  1:5408834/93‑1 (MQ=255)
 cACCAATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAAcggc‑g                                                                                          >  1:4391124/1‑93 (MQ=255)
 cACCAATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAAcggc‑g                                                                                          >  1:3420577/1‑93 (MQ=255)
  aCCAATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAAcggc‑gg                                                                                         <  2:8399919/93‑1 (MQ=255)
  aCCAATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAAcggc‑gg                                                                                         <  2:1057054/93‑1 (MQ=255)
  aCCAATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAAcggc‑gg                                                                                         >  1:4230672/1‑93 (MQ=255)
    cAATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCCACCAGCCGACCATCCGTTTCAAACGGC‑gg‑gg                                                                                      >  1:1104355/1‑93 (MQ=255)
     aaTTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑gg‑ggg                                                                                     <  2:8785284/93‑2 (MQ=255)
     aaTTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑gg‑ggg                                                                                     >  2:3319552/1‑92 (MQ=255)
      aTTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑gg‑gggt                                                                                    <  1:7590719/93‑3 (MQ=255)
      aTTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑gg‑gggg                                                                                    >  1:2998687/1‑91 (MQ=255)
       ttCGCCCATTAAAACCGCGATAATCAAAGGCCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑gg‑gggta                                                                                   <  2:2065440/93‑4 (MQ=255)
          gCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCg                                                                                <  1:5911372/93‑1 (MQ=255)
          gCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCg                                                                                <  2:7901513/93‑1 (MQ=255)
             cATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCgggg                                                                             >  2:576803/1‑92 (MQ=255)
             cATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑GATCGGgc                                                                             >  1:5600041/1‑93 (MQ=255)
               ttAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGgcag                                                                           <  2:5096006/93‑1 (MQ=255)
               ttAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑GATCGGgcag                                                                           >  1:5774205/1‑93 (MQ=255)
                 aaaaCCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑GATCGGgcagca                                                                         >  2:7159984/1‑93 (MQ=255)
                 aaaaCCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑GATCGGgcagca                                                                         >  2:2925384/1‑93 (MQ=255)
                   aaCCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑GATCGGGCAGCAGa                                                                       >  1:871570/1‑93 (MQ=255)
                    aCCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGTAGaa                                                                      >  1:3540816/1‑93 (MQ=255)
                       gcgATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGc                                                                   <  1:6333044/93‑1 (MQ=255)
                       gcgATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGc                                                                   >  2:1379613/1‑93 (MQ=255)
                         gATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGccc                                                                 <  1:1948184/93‑1 (MQ=255)
                         gATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGccc                                                                 <  1:6565285/93‑1 (MQ=255)
                         gATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGccc                                                                 <  1:3361729/93‑1 (MQ=255)
                          aTAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCg                                                                <  2:6983215/93‑1 (MQ=255)
                           tAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGt                                                               <  2:1649208/93‑1 (MQ=255)
                           tAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑GATCGGGCAGCAGAACGCCCGt                                                               >  2:5989026/1‑93 (MQ=255)
                           tAATCAAAGACCGACGATTTTTCAGTGTCGATTGTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGt                                                               <  1:8507368/93‑1 (MQ=255)
                            aaTCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTc                                                              >  1:4531243/1‑93 (MQ=255)
                            aaTCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑GATCGGGCAGCAGAACGCCCGTc                                                              >  1:14437/1‑93 (MQ=255)
                               cAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGt                                                           <  1:1266574/93‑1 (MQ=255)
                               cAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGt                                                           <  2:4151348/93‑1 (MQ=255)
                               aaaaGGCCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGt                                                           <  2:7595113/92‑1 (MQ=255)
                                aaaGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACCACCGTCAGtt                                                          >  1:2834727/1‑93 (MQ=255)
                                  aGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCa                                                        <  1:2075886/93‑1 (MQ=255)
                                  aGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCa                                                        <  1:8570870/93‑1 (MQ=255)
                                  aGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑GATCGGGCAGCAGAACGCCCGTCAGTTCa                                                        >  2:3746673/1‑93 (MQ=255)
                                   gACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCAt                                                       >  2:2608062/1‑93 (MQ=255)
                                   gACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCAt                                                       <  2:388640/93‑1 (MQ=255)
                                     ccGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATag                                                     >  2:8118793/1‑93 (MQ=255)
                                     ccGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑GATCGGGCAGCAGAACGCCCGTCAGTTCATaa                                                     >  2:6659030/1‑92 (MQ=255)
                                       gacgaTTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATagag                                                   >  2:6144317/1‑93 (MQ=255)
                                       gacgaTTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑GATCGGGCAGCAGAACGCCCGTCAGTTCATagag                                                   >  2:8420980/1‑93 (MQ=255)
                                         cgaTTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGAt                                                 <  1:3928339/93‑1 (MQ=255)
                                          gaTTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATATAGATc                                                >  2:1227475/1‑93 (MQ=255)
                                          gaTTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATc                                                <  2:4051269/93‑1 (MQ=255)
                                           aTTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCa                                               <  1:7090791/93‑1 (MQ=255)
                                            tttttCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATATAGATCAc                                              <  2:2837278/93‑1 (MQ=255)
                                            tttttCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCAc                                              <  1:8154532/93‑1 (MQ=255)
                                              tttCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCAccc                                            <  2:5024723/93‑1 (MQ=255)
                                               ttCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCa                                           <  1:2225163/93‑1 (MQ=255)
                                                tCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAg                                          <  1:7152780/93‑1 (MQ=255)
                                                tCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAg                                          <  1:549584/93‑1 (MQ=255)
                                                tCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAg                                          >  2:4775879/1‑93 (MQ=255)
                                                        gATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGc                                  >  2:5458878/1‑93 (MQ=255)
                                                         aTTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGcc                                 >  2:5383246/1‑93 (MQ=255)
                                                          ttttCGCTCCCCGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCa                                <  1:7043400/93‑1 (MQ=255)
                                                             tCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑GATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGaa                             >  2:4529149/1‑93 (MQ=255)
                                                               gCTCCCAGCCGACCATCCGTGTCAAACGGC‑GGAGG‑TATCGGGTAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGaaaa                           <  1:1193355/93‑1 (MQ=255)
                                                               gCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGaaaa                           >  1:1626720/1‑93 (MQ=255)
                                                                cTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAAt                          >  1:1392910/1‑93 (MQ=255)
                                                                  aCCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAAttt                        <  2:2727495/93‑1 (MQ=255)
                                                                  aCCAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAAttt                        >  2:19970/1‑93 (MQ=255)
                                                                   ccAGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTa                       <  2:7041661/93‑1 (MQ=255)
                                                                     aGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGGAGAACGCCCGTCAGTTCATAGAGACCACCCAGGGAATGGCCAGAAAATTTAAg                     >  2:7424326/1‑93 (MQ=255)
                                                                     aGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAg                     <  1:7490530/93‑1 (MQ=255)
                                                                     aGCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAg                     <  2:3561746/93‑1 (MQ=255)
                                                                      gCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGc                    <  1:1005388/93‑1 (MQ=255)
                                                                      gCCGACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGc                    <  1:6692601/93‑1 (MQ=255)
                                                                         gACCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGt                 >  1:7273028/1‑93 (MQ=255)
                                                                          aCCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTa                >  2:3446958/1‑93 (MQ=255)
                                                                          aCCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTa                >  1:2510012/1‑93 (MQ=255)
                                                                          aCCATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTa                >  1:7387384/1‑93 (MQ=255)
                                                                           ccATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTaa               <  1:8298504/93‑1 (MQ=255)
                                                                           ccATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTaa               <  1:7946070/93‑1 (MQ=255)
                                                                            cATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTaaa              >  2:1955091/1‑93 (MQ=255)
                                                                            cATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTaaa              >  2:5600164/1‑93 (MQ=255)
                                                                            cATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTaaa              <  1:7766277/93‑1 (MQ=255)
                                                                            cATCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTaaa              <  1:5977472/93‑1 (MQ=255)
                                                                             aTCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTCAAt             >  2:4830459/1‑93 (MQ=255)
                                                                             aTCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAAt             <  2:8248668/93‑1 (MQ=255)
                                                                             aTCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAAt             <  1:4656065/93‑1 (MQ=255)
                                                                             aTCCGTTTCAAACGGCGGG‑GG‑AATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAAt             >  1:324516/1‑93 (MQ=255)
                                                                              tCCGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATc            >  1:552136/1‑93 (MQ=255)
                                                                              tCCGTTTCAAACGGCGGG‑GG‑GATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATc            >  2:422880/1‑93 (MQ=255)
                                                                              tCCGTTTCAAACGGC‑GG‑GGTTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATc            <  1:4882884/93‑1 (MQ=255)
                                                                               ccGTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCg           >  1:2560621/1‑93 (MQ=255)
                                                                                 gTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGac         <  2:3158093/93‑1 (MQ=255)
                                                                                 gTTTCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGCCAGCTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGac         >  2:4653902/1‑93 (MQ=255)
                                                                                  tttCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGaca        <  1:6041667/93‑1 (MQ=255)
                                                                                  tttCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGaca        <  1:5193332/93‑1 (MQ=255)
                                                                                  tttCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGaca        >  1:4029654/1‑93 (MQ=255)
                                                                                  gttCAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGaca        <  2:6232393/92‑1 (MQ=255)
                                                                                     cAAACGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCg     <  2:2340945/93‑1 (MQ=255)
                                                                                       aaCGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGcc   <  2:7761659/93‑1 (MQ=255)
                                                                                       aaCGGCGGG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATAGACACCGcc   >  1:6848066/1‑93 (MQ=255)
                                                                                             |                                                                                         
TCACCAATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑GG‑GG‑TATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCC  >  NC_000913/3674980‑3675159

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 242 total aligned reads displayed.
CCAATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑GG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATCTTCATTG  >  NC_000913/3674983‑3675169
                                                                                               |                                                                                             
CCAATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑GG‑GG                                                                                               >  SRR4302541.7011701/1‑94 (MQ=60)
CCAATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑GG‑GG                                                                                               >  SRR4302541.5184349/1‑94 (MQ=60)
CCAATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCCACCAGCCGACCATCCGTTTCAAACGGC‑GG‑GG                                                                                               >  SRR4302541.1114704/1‑94 (MQ=60)
 CAATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑GG‑GGG                                                                                              <  SRR4302541.3848324/94‑1 (MQ=60)
  AATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑GG‑GGgt                                                                                             >  SRR4302541.3028952/1‑92 (MQ=60)
  AATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑GG‑GGgt                                                                                             <  SRR4302541.6514355/94‑3 (MQ=60)
  AATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑GG‑GGgt                                                                                             >  SRR4302541.7879875/1‑92 (MQ=60)
  AATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑GG‑GGgg                                                                                             >  SRR4302541.3028951/1‑92 (MQ=60)
   ATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑GG‑GGgta                                                                                            <  SRR4302541.7671808/94‑4 (MQ=60)
    TTCGCCCATTAAACCCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTAT                                                                                            <  SRR4302541.836974/94‑1 (MQ=60)
      CGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCG                                                                                          <  SRR4302541.4819600/94‑1 (MQ=60)
       GCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGG                                                                                         <  SRR4302541.5971548/94‑1 (MQ=60)
        CCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑GG‑GGggatcggg                                                                                       >  SRR4302541.573378/1‑86 (MQ=60)
         CCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGC                                                                                       >  SRR4302541.5615422/1‑94 (MQ=60)
         CCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGC                                                                                       >  SRR4302541.335856/1‑94 (MQ=60)
         CCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGC                                                                                       >  SRR4302541.8501703/1‑94 (MQ=60)
         CCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGGATCGGGC                                                                                       >  SRR4302541.5657365/1‑94 (MQ=60)
          CATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCA                                                                                      >  SRR4302541.663977/1‑94 (MQ=60)
          CATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGGATCGGGCA                                                                                      >  SRR4302541.1186318/1‑94 (MQ=60)
          CATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑GG‑GGggatcgggga                                                                                     >  SRR4302541.8280245/1‑84 (MQ=60)
          CATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑GG‑GGggatcgggaa                                                                                     >  SRR4302541.1186319/1‑84 (MQ=60)
          CATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑GG‑GGgaattgggca                                                                                     >  SRR4302541.1186317/1‑84 (MQ=60)
           ATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAG                                                                                     >  SRR4302541.3563692/1‑94 (MQ=60)
           ATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAG                                                                                     <  SRR4302541.813926/94‑1 (MQ=60)
           ATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGGATCGGGCAG                                                                                     >  SRR4302541.5832933/1‑94 (MQ=60)
           ATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGGATCGGGCAG                                                                                     >  SRR4302541.342759/1‑94 (MQ=60)
           ATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑GG‑GGggatcggggag                                                                                    >  SRR4302541.6426817/1‑83 (MQ=60)
            TTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGC                                                                                    <  SRR4302541.1990871/94‑1 (MQ=60)
             TAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCA                                                                                   >  SRR4302541.1064251/1‑94 (MQ=60)
             TAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCA                                                                                   <  SRR4302541.5984995/94‑1 (MQ=60)
               AAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCCGA                                                                                 >  SRR4302541.420031/1‑94 (MQ=60)
               AAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGA                                                                                 >  SRR4302541.5553579/1‑94 (MQ=60)
               AAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGGATCGGGCAGCAGA                                                                                 >  SRR4302541.879515/1‑94 (MQ=60)
               AAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGGATCGGGCAGCAGA                                                                                 >  SRR4302541.5553578/1‑94 (MQ=60)
                AACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGTAGAA                                                                                >  SRR4302541.3576533/1‑94 (MQ=60)
                 ACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAAC                                                                               >  SRR4302541.1098587/1‑94 (MQ=60)
                 ACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGGATCGGGCAGCAGAAC                                                                               >  SRR4302541.2246431/1‑94 (MQ=60)
                  CCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAcgagcagg                                                                              >  SRR4302541.2363682/1‑86 (MQ=60)
                   CGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGAAGAACGC                                                                             >  SRR4302541.696221/1‑94 (MQ=60)
                    GCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCC                                                                            <  SRR4302541.1319658/94‑1 (MQ=60)
                    GCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCC                                                                            <  SRR4302541.6397792/94‑1 (MQ=60)
                    GCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGGATCGGGCAGCAGAACGCC                                                                            >  SRR4302541.4630638/1‑94 (MQ=60)
                     CGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCC                                                                           <  SRR4302541.6679536/94‑1 (MQ=60)
                      GATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCG                                                                          <  SRR4302541.3395274/94‑1 (MQ=60)
                      GATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCG                                                                          <  SRR4302541.6632434/94‑1 (MQ=60)
                      GATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCG                                                                          >  SRR4302541.6079601/1‑94 (MQ=60)
                      GATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCG                                                                          >  SRR4302541.8803612/1‑94 (MQ=60)
                      GATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCG                                                                          <  SRR4302541.1966958/94‑1 (MQ=60)
                       ataaccataccccgaccatttttaaggtTCGATGTTCGCTACGAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGT                                                                         <  SRR4302541.6071501/66‑1 (MQ=60)
                       ATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGT                                                                         <  SRR4302541.6071502/94‑1 (MQ=60)
                       ATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGC                                                                         >  SRR4302541.7124163/1‑94 (MQ=60)
                        TAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTC                                                                        >  SRR4302541.6039017/1‑94 (MQ=60)
                        TAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTC                                                                        >  SRR4302541.4577003/1‑94 (MQ=60)
                        TAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGGATCGGGCAGCAGAACGCCCGTC                                                                        >  SRR4302541.14543/1‑94 (MQ=60)
                        TAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGGATCGGGCAGCAGAACGCCCGTC                                                                        >  SRR4302541.5974526/1‑94 (MQ=60)
                        TAATCAAAGACCGACGATTTTTCAGTGTCGATTGTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTC                                                                        <  SRR4302541.8598970/94‑1 (MQ=60)
                         AATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCA                                                                       <  SRR4302541.721135/94‑1 (MQ=60)
                         AATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCA                                                                       <  SRR4302541.6160951/94‑1 (MQ=60)
                         AATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGGATCGGGCAGCAGAACGCCCGTCA                                                                       >  SRR4302541.3678642/1‑94 (MQ=60)
                          ATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAG                                                                      >  SRR4302541.8657377/1‑94 (MQ=60)
                           TCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGT                                                                     <  SRR4302541.6133637/94‑1 (MQ=60)
                            CAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTT                                                                    <  SRR4302541.1279169/94‑1 (MQ=60)
                            CAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTT                                                                    >  SRR4302541.3261785/1‑94 (MQ=60)
                            CAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGGT                                                                    >  SRR4302541.145277/1‑94 (MQ=60)
                            CAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACCACCGTCAGTT                                                                    >  SRR4302541.2863269/1‑94 (MQ=60)
                            CAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGGATCGGGCAGCAGAACGCCCGTCAGTT                                                                    >  SRR4302541.7680068/1‑94 (MQ=60)
                            CAAAGACCGACGATTTTTAAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAATCGGC‑GG‑GGggcatagggagcagatcgtccgtcagac                                                                   >  SRR4302541.2393224/1‑66 (MQ=60)
                             AAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTC                                                                   >  SRR4302541.7275232/1‑94 (MQ=60)
                             AAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGGATCGGGCAGCAGAACGCCCGTCAGTTC                                                                   >  SRR4302541.3325128/1‑94 (MQ=60)
                             AAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGGATCGGGCAGCAGAACGCCCGTCAGTTC                                                                   >  SRR4302541.44537/1‑94 (MQ=60)
                              AAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCA                                                                  <  SRR4302541.4931316/94‑1 (MQ=60)
                              AAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGGATCGGGCAGCAGAACGCCCGGCAGTTCA                                                                  >  SRR4302541.3100112/1‑94 (MQ=60)
                               AGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCAT                                                                 <  SRR4302541.8662921/94‑1 (MQ=60)
                               AGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCAT                                                                 <  SRR4302541.7464220/94‑1 (MQ=60)
                               AGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCAT                                                                 <  SRR4302541.2095963/94‑1 (MQ=60)
                               AGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCAT                                                                 >  SRR4302541.1739139/1‑94 (MQ=60)
                               AGACCGACGAGTTTTCAGTGTCAATTTTCGCTACCAGACGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCAT                                                                 <  SRR4302541.7464219/94‑1 (MQ=60)
                                GACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATA                                                                >  SRR4302541.3089375/1‑94 (MQ=60)
                                 ACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAG                                                               <  SRR4302541.3709845/94‑1 (MQ=60)
                                  CCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCCAACGGCGGG‑GGTCACGGGCAGCAGAACGCCCAGCAGTTCATACA                                                              >  SRR4302541.7204363/1‑94 (MQ=60)
                                   CGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGGATCGGGCAGCAGAACGCCCGTCAGTTCATAGAG                                                             >  SRR4302541.6918619/1‑94 (MQ=60)
                                      CGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATC                                                          <  SRR4302541.1929744/94‑1 (MQ=60)
                                      CGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATC                                                          <  SRR4302541.3967481/94‑1 (MQ=60)
                                      CGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATC                                                          <  SRR4302541.5959819/94‑1 (MQ=60)
                                      CGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATC                                                          <  SRR4302541.6860049/94‑1 (MQ=60)
                                       GATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCA                                                         <  SRR4302541.5380447/94‑1 (MQ=60)
                                       GATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCA                                                         <  SRR4302541.4905547/94‑1 (MQ=60)
                                        ATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCAC                                                        <  SRR4302541.7166229/94‑1 (MQ=60)
                                        ATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCAC                                                        <  SRR4302541.7166230/94‑1 (MQ=60)
                                        ATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGGTCATAAAGATCAC                                                        >  SRR4302541.5060731/1‑94 (MQ=60)
                                         TTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACC                                                       <  SRR4302541.8243657/94‑1 (MQ=60)
                                          TTTTCAGTGTCTATTTTCGCTACCAGCCGACCGTCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCC                                                      <  SRR4302541.1240620/94‑1 (MQ=60)
                                          TTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGGATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATC‑CCCA                                                     >  SRR4302541.8542241/1‑94 (MQ=60)
                                            TTCAGTGTCGATTTTCGCTCCCAGCCGACGATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCACTTCATAGAGAcccccccg                                                    <  SRR4302541.652534/94‑9 (MQ=60)
                                            TTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAG                                                    >  SRR4302541.2717490/1‑94 (MQ=60)
                                            TTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAG                                                    >  SRR4302541.2358289/1‑94 (MQ=60)
                                            TTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAG                                                    <  SRR4302541.2246726/94‑1 (MQ=60)
                                             TCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGGAGCAGAACACCCGTCAGTTCATAGAGAGCACCCAGC                                                   >  SRR4302541.5534313/1‑94 (MQ=60)
                                             TCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGT                                                   <  SRR4302541.554761/94‑1 (MQ=60)
                                             TCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGGATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGG                                                   >  SRR4302541.5680718/1‑94 (MQ=60)
                                              TAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTG                                                  <  SRR4302541.7243337/94‑1 (MQ=60)
                                              CAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGGATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTG                                                  >  SRR4302541.7218897/1‑94 (MQ=60)
                                               AGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGA                                                 >  SRR4302541.4661108/1‑94 (MQ=60)
                                               AGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGAATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCAGCCAGTTA                                                 >  SRR4302541.4097263/1‑94 (MQ=60)
                                                GTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAA                                                <  SRR4302541.590914/94‑1 (MQ=60)
                                                 TGTCTATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAAT                                               <  SRR4302541.3551764/94‑1 (MQ=60)
                                                 TGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAAT                                               <  SRR4302541.1062536/94‑1 (MQ=60)
                                                 TGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAAT                                               <  SRR4302541.4003851/94‑1 (MQ=60)
                                                   TCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCG                                             <  SRR4302541.8869955/94‑1 (MQ=60)
                                                   GCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCG                                             <  SRR4302541.2929019/94‑1 (MQ=60)
                                                    CGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGC                                            >  SRR4302541.1445741/1‑94 (MQ=60)
                                                     GATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCC                                           >  SRR4302541.1639957/1‑94 (MQ=60)
                                                     GATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCC                                           >  SRR4302541.3327662/1‑94 (MQ=60)
                                                     GATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCC                                           <  SRR4302541.3495435/94‑1 (MQ=60)
                                                     GATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACACCCGTCAGTTCATAGAGATCACCCAGTGAATCGCC                                           <  SRR4302541.114880/94‑1 (MQ=60)
                                                      ATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCA                                          >  SRR4302541.2183207/1‑94 (MQ=60)
                                                       TTTTCGCTCCCCGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAG                                         <  SRR4302541.7118291/94‑1 (MQ=60)
                                                        TTTCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGGATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATAACCCAGTGAATCGCCAGA                                        >  SRR4302541.5395984/1‑94 (MQ=60)
                                                          TCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAA                                      >  SRR4302541.6477931/1‑94 (MQ=60)
                                                          TCGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGAATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCAACCCGTGAATCGCCAGAAA                                      >  SRR4302541.8426552/1‑94 (MQ=60)
                                                           CGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAA                                     >  SRR4302541.1642842/1‑94 (MQ=60)
                                                           CGCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGGATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAA                                     >  SRR4302541.141113/1‑94 (MQ=60)
                                                            GCTCCCAGCCGACCATCCGTGTCAAACGGC‑GGAGGTATCGGGTAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAAT                                    <  SRR4302541.1204922/94‑1 (MQ=60)
                                                            GCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAAT                                    >  SRR4302541.5729149/1‑94 (MQ=60)
                                                            GCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAAT                                    >  SRR4302541.8647666/1‑94 (MQ=60)
                                                            GCTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAAT                                    >  SRR4302541.1406560/1‑94 (MQ=60)
                                                             CTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATT                                   >  SRR4302541.2076781/1‑94 (MQ=60)
                                                             CTACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATT                                   >  SRR4302541.4306809/1‑94 (MQ=60)
                                                              TACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTT                                  >  SRR4302541.3409611/1‑94 (MQ=60)
                                                              TACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTT                                  <  SRR4302541.1263660/94‑1 (MQ=60)
                                                              TACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTT                                  >  SRR4302541.5202101/1‑94 (MQ=60)
                                                              TACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCACAAAATTT                                  >  SRR4302541.5202100/1‑94 (MQ=60)
                                                               ACCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTA                                 <  SRR4302541.5616705/94‑1 (MQ=60)
                                                                CCAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAA                                <  SRR4302541.758749/94‑1 (MQ=60)
                                                                 CAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAG                               <  SRR4302541.8075494/94‑1 (MQ=60)
                                                                 CAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAG                               <  SRR4302541.1343332/94‑1 (MQ=60)
                                                                 CAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAG                               >  SRR4302541.403569/1‑94 (MQ=60)
                                                                 CAGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAG                               <  SRR4302541.1905843/94‑1 (MQ=60)
                                                                  AGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGC                              >  SRR4302541.752885/1‑94 (MQ=60)
                                                                  AGCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGC                              <  SRR4302541.7570638/94‑1 (MQ=60)
                                                                   GCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCC                             <  SRR4302541.6762248/94‑1 (MQ=60)
                                                                   GCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCC                             <  SRR4302541.7698153/94‑1 (MQ=60)
                                                                   GCCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCC                             <  SRR4302541.1014723/94‑1 (MQ=60)
                                                                    CCGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCG                            <  SRR4302541.7552620/94‑1 (MQ=60)
                                                                    CCGACCATCAGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCG                            <  SRR4302541.7861369/94‑1 (MQ=60)
                                                                     CGACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGT                           >  SRR4302541.7350621/1‑94 (MQ=60)
                                                                      GACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTA                          >  SRR4302541.7466378/1‑94 (MQ=60)
                                                                      GACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTA                          >  SRR4302541.2535307/1‑94 (MQ=60)
                                                                       ACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAA                         >  SRR4302541.2556112/1‑94 (MQ=60)
                                                                       ACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAA                         <  SRR4302541.5414868/94‑1 (MQ=60)
                                                                       ACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAA                         <  SRR4302541.7348242/94‑1 (MQ=60)
                                                                       ACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAA                         <  SRR4302541.4605760/94‑1 (MQ=60)
                                                                       ACCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAA                         <  SRR4302541.4087463/94‑1 (MQ=60)
                                                                        CCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAA                        <  SRR4302541.8033600/94‑1 (MQ=60)
                                                                        CCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAA                        >  SRR4302541.6005501/1‑94 (MQ=60)
                                                                        CCATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAA                        >  SRR4302541.8215709/1‑94 (MQ=60)
                                                                        CCATCCGTTTCAAACGGC‑GG‑GGGATCGGGCAGCAGAAAGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAAATTAAACCGTAAAA                       >  SRR4302541.17856/1‑94 (MQ=60)
                                                                         CATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAAT                       <  SRR4302541.5551732/94‑1 (MQ=60)
                                                                         CATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAAT                       >  SRR4302541.5492650/1‑94 (MQ=60)
                                                                         CATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAAT                       >  SRR4302541.3426802/1‑94 (MQ=60)
                                                                          ATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATC                      >  SRR4302541.7631551/1‑94 (MQ=60)
                                                                          ATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATC                      >  SRR4302541.557333/1‑94 (MQ=60)
                                                                          ATCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATC                      >  SRR4302541.2221865/1‑94 (MQ=60)
                                                                           TCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCG                     >  SRR4302541.2586288/1‑94 (MQ=60)
                                                                           TCCGTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCG                     >  SRR4302541.444541/1‑94 (MQ=60)
                                                                              GTTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACA                  >  SRR4302541.4069461/1‑94 (MQ=60)
                                                                               TTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACAC                 <  SRR4302541.8884699/94‑1 (MQ=60)
                                                                               TTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACAC                 <  SRR4302541.5246772/94‑1 (MQ=60)
                                                                               TTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACAC                 <  SRR4302541.6103495/94‑1 (MQ=60)
                                                                               TTTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACAC                 <  SRR4302541.2945191/94‑1 (MQ=60)
                                                                                TTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACC                >  SRR4302541.5592274/1‑94 (MQ=60)
                                                                                TTCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACC                <  SRR4302541.79488/94‑1 (MQ=60)
                                                                                 TCAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCG               <  SRR4302541.7137277/94‑1 (MQ=60)
                                                                                  CAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGC              <  SRR4302541.4903263/94‑1 (MQ=60)
                                                                                  CAAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGC              >  SRR4302541.8789874/1‑94 (MQ=60)
                                                                                   AAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCC             <  SRR4302541.7845266/94‑1 (MQ=60)
                                                                                   AAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCC             <  SRR4302541.2540125/94‑1 (MQ=60)
                                                                                   AAACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATAGACACCGCC             >  SRR4302541.6921273/1‑94 (MQ=60)
                                                                                    AACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCC            <  SRR4302541.8369223/94‑1 (MQ=60)
                                                                                    AACGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCC            <  SRR4302541.2685075/94‑1 (MQ=60)
                                                                                      CGGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCAT          <  SRR4302541.7405312/94‑1 (MQ=60)
                                                                                       GGCGGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATC         <  SRR4302541.8807687/94‑1 (MQ=60)
                                                                                        gcgGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATCT        <  SRR4302541.729482/91‑1 (MQ=60)
                                                                                        gcgGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATCT        <  SRR4302541.2502066/91‑1 (MQ=60)
                                                                                         cgGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATCTT       >  SRR4302541.427282/3‑94 (MQ=60)
                                                                                         cgGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATCTT       <  SRR4302541.8744364/92‑1 (MQ=60)
                                                                                         cgGG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATCTT       >  SRR4302541.3869177/3‑94 (MQ=60)
                                                                                         G‑GG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATCTTC      >  SRR4302541.4096967/1‑94 (MQ=60)
                                                                                         G‑GG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATCTTC      >  SRR4302541.6125640/1‑94 (MQ=60)
                                                                                         G‑GG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATCTTC      >  SRR4302541.4641987/1‑94 (MQ=60)
                                                                                         G‑GG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATCTTC      >  SRR4302541.2584702/1‑94 (MQ=60)
                                                                                         G‑GG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATCTTC      >  SRR4302541.8211097/1‑94 (MQ=60)
                                                                                           GG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATCTTCA     >  SRR4302541.4714715/1‑94 (MQ=60)
                                                                                           GG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATCTTCA     <  SRR4302541.7817301/94‑1 (MQ=60)
                                                                                              GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATCTTCATT   <  SRR4302541.6188405/94‑1 (MQ=60)
                                                                                              GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATCTTCATT   >  SRR4302541.8374417/1‑94 (MQ=60)
                                                                                              GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATCTTCATT   <  SRR4302541.8310076/94‑1 (MQ=60)
                                                                                               GTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATCTTCATTG  <  SRR4302541.7063248/94‑1 (MQ=60)
                                                                                               GTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATCTTCATTG  >  SRR4302541.6801772/1‑94 (MQ=60)
                                                                                               GTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATCTTCATTG  >  SRR4302541.3360227/1‑94 (MQ=60)
                                                                                               |                                                                                             
CCAATTCGCCCATTAAAACCGCGATAATCAAAGACCGACGATTTTTCAGTGTCGATTTTCGCTACCAGCCGACCATCCGTTTCAAACGGC‑GG‑GGTATCGGGCAGCAGAACGCCCGTCAGTTCATAGAGATCACCCAGTGAATCGCCAGAAAATTTAAGCCGTAAATCGACACCGCCCATCTTCATTG  >  NC_000913/3674983‑3675169

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑