Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
744 |
338.8 |
17650688 |
97.8% |
17262372 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,876,595 |
G→C |
P385A (CCG→GCG) |
gyrB ← |
DNA gyrase subunit B |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,876,595 | 0 | G | C | 99.5%
| 705.1
/ NA
| 207 | P385A (CCG→GCG) | gyrB | DNA gyrase subunit B |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base C (39/167); total (39/168) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 288 total aligned reads displayed.
GATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGGCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTT > NC_000913/3876505‑3876684
|
tCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCt < 2:3457671/93‑1 (MQ=255)
cgcgTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCtt < 2:590801/93‑1 (MQ=255)
gcgTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTc < 1:489622/93‑1 (MQ=255)
ccgTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTc < 2:1232441/92‑1 (MQ=255)
cgTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCTGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTca < 1:5835420/93‑1 (MQ=255)
gTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTcac < 2:1810571/93‑1 (MQ=255)
ttCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTcacg < 1:4497872/93‑1 (MQ=255)
ttCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTcacg < 2:4450055/93‑1 (MQ=255)
ttCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCTCGCGCGCGACGCGCCGCCTcccg > 2:1043451/1‑93 (MQ=255)
tCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCCTTTTACGCGCGCGACGCGCCCCTTcaccg > 1:5979757/1‑91 (MQ=255)
cTGGCATTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCGCCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTcacgggc < 2:2509480/93‑1 (MQ=255)
cTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGGCGCGCCGCTTcacgggg > 2:1861038/1‑92 (MQ=255)
ggCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCTCCGCTTcacgggcac < 2:7473649/93‑1 (MQ=255)
ggCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTcacgggcac < 1:6587608/93‑1 (MQ=255)
ggCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTcacgggcac < 2:8391757/93‑1 (MQ=255)
ggCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTCCGCGCGCGGCGCGCCGCTTcacgggcac > 2:2963529/1‑93 (MQ=255)
gCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTcacgggcacg < 2:5888226/93‑1 (MQ=255)
gCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTcacgggcacg < 2:7848965/93‑1 (MQ=255)
cgTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTcacgggcacggg < 1:6463155/92‑1 (MQ=255)
aGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTcacgggcacggg > 1:1057291/1‑93 (MQ=255)
gTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCacgggcacgggc < 2:8603079/93‑1 (MQ=255)
gTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCCTTTCACGCGCGCGGCGCGCCGCCTCacgggcacgggc > 1:2708551/1‑93 (MQ=255)
tCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCGCCTTTACGGCGGGTCATTTCCCGCGCGCGACGCGCCGCTTCAcgggcacgggca < 1:446382/93‑1 (MQ=255)
tCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCAcgggcacgggca < 1:1870827/93‑1 (MQ=255)
cTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCAATTTCCGCGCGCGGCGCCGCGCCTcaccgggacggggcg > 1:3339223/1‑90 (MQ=255)
gCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGGCGCGCCGCCTCACCGGCACGGgccgca > 1:1171528/1‑93 (MQ=255)
ccAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCAt < 1:1220463/93‑1 (MQ=255)
cAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATc < 2:3865874/93‑1 (MQ=255)
cAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCCTTTCACGCGCGCGGCGCGCCGCCTCCCCGGCCAGGgcagccac > 1:346534/1‑90 (MQ=255)
aGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCg < 2:479366/93‑1 (MQ=255)
ttGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATa < 1:1651299/93‑1 (MQ=255)
cGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACCCGCGCGCCGCGCCGCTTCACAGGGACGGGCAGCGTCGATAAattt > 2:6693761/1‑93 (MQ=255)
cGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCTCGCGCGCGGCGCGCCCCCTCACTGGGTCAGGCAGCGTCTATAAtttt > 2:6163330/1‑93 (MQ=255)
ggCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGGATTTCACCCGCGCGACGCGCCGCTTCCCGGGCCCGGGGAGCCTCGATAATTTTg > 1:5281540/1‑93 (MQ=255)
gCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACCCGCGCGACGCGCCGCCTCACCGGCACCGGCAGCATCGATAAtttttc > 2:8363202/1‑91 (MQ=255)
ggCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACCGGCACGGGCAGCATCGATAATTTTGccca > 1:4564435/1‑91 (MQ=255)
ggCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCCTTTCACGCGCGCGACGCGCCGCTTTCCCGGCACGGGGAGCATTGGTAATTTTTccca > 2:737638/1‑91 (MQ=255)
cGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCAc < 1:3101797/93‑1 (MQ=255)
cGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCAc < 1:8489036/93‑1 (MQ=255)
cGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCAc < 1:7680942/93‑1 (MQ=255)
cGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCAc < 1:6632653/93‑1 (MQ=255)
ccTAAGTCGAGCGCACCTTTGCGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACg < 1:2325717/92‑1 (MQ=255)
tAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGGCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGAt < 1:3711645/93‑1 (MQ=255)
aaGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGAtt < 2:7544580/93‑1 (MQ=255)
aGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGAttt < 2:7623035/93‑1 (MQ=255)
aGTCGAGCGAACCTTAACGGCGAGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCGAACCACGAttt < 2:4230976/93‑1 (MQ=255)
tCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTc < 1:7543917/93‑1 (MQ=255)
tCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTc < 1:5590037/93‑1 (MQ=255)
tCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTc < 1:5412287/93‑1 (MQ=255)
gAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTcgc < 1:7999423/93‑1 (MQ=255)
gcgcACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGt < 2:2651043/93‑1 (MQ=255)
cgcACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTc < 1:3277428/93‑1 (MQ=255)
gcACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTCTTTCAAACACGACTTTCGCGTCg > 2:4759819/1‑93 (MQ=255)
gcACCTTTACGGCGGGGCATTTCACGCGCGCGACGCGCCGCCTCACGGGGACGGGCAGCATCGATAATTTTTTCAACCACGATTTTTGCGTCg > 2:3143039/1‑93 (MQ=255)
aCCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGt < 2:8044614/93‑1 (MQ=255)
ccTTTACGGCGGGTCATTTCACGGGCGGGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGtt < 1:1902772/93‑1 (MQ=255)
ccTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGGACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCCCGTCGGtt > 2:2805061/1‑93 (MQ=255)
ccTTTACGGCGGGGCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGtt > 2:2687915/1‑93 (MQ=255)
ttACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTggg < 1:7157799/93‑1 (MQ=255)
tACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGt < 1:605368/93‑1 (MQ=255)
aCGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGtt < 1:8173077/93‑1 (MQ=255)
aCGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGtt < 1:4962491/93‑1 (MQ=255)
cggcggGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGttt < 2:699125/93‑1 (MQ=255)
cggcggGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGgtt > 2:2119559/1‑93 (MQ=255)
cggcggGGCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACCATTTTCGCGTCGGTTGGGgtt > 2:6901942/1‑93 (MQ=255)
ggcggGTCATTTCACGCGCTCCACCCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGtttt < 1:2361682/93‑1 (MQ=255)
ggcggGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGtttt > 1:3575951/1‑93 (MQ=255)
gcggGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTc > 2:1487755/1‑93 (MQ=255)
ggggTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTcc < 1:2961802/92‑1 (MQ=255)
cggGTCATTTCGCGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTcc < 1:3815892/93‑1 (MQ=255)
cggGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTcc < 2:5240259/93‑1 (MQ=255)
gggTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCca > 2:6724127/1‑93 (MQ=255)
gggTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCca < 1:4759113/93‑1 (MQ=255)
gggTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCca > 2:6476140/1‑93 (MQ=255)
gggTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCca < 1:3074498/93‑1 (MQ=255)
gTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCcagc < 2:6258474/93‑1 (MQ=255)
tCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCcagca < 2:4569484/93‑1 (MQ=255)
cATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCcagcag > 2:4140440/1‑93 (MQ=255)
cATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCcagcag < 1:2849119/93‑1 (MQ=255)
aTTTCACGCGCGCGACGCGCCTCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGGTTTTCAGTAgg > 2:1382181/1‑93 (MQ=255)
aTTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAgg < 2:5507400/93‑1 (MQ=255)
aTTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAgg > 1:7900264/1‑93 (MQ=255)
aTTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAgg > 1:1419998/1‑93 (MQ=255)
tttCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGt < 1:939722/93‑1 (MQ=255)
tcccgcgccggACCCGCCGCCTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTAt < 2:529010/90‑1 (MQ=255)
tCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTAt > 2:8773656/1‑93 (MQ=255)
tCACGCGCGCGACGCACCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTAt < 1:8390109/93‑1 (MQ=255)
ccgcgcgcgACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTc < 1:4825469/92‑1 (MQ=255)
aCGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCTAGCAGGTATTc < 2:2393421/93‑1 (MQ=255)
aCGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTc > 2:2190149/1‑93 (MQ=255)
cgcgcgACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGc < 2:3322396/93‑1 (MQ=255)
cgcgACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCca > 2:6054720/1‑93 (MQ=255)
gcgACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCcag > 1:8754181/1‑93 (MQ=255)
gACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCcagca < 2:7155299/93‑1 (MQ=255)
gcgcgCCGCTTCACGGGCCCGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCcagcag < 2:8747696/92‑1 (MQ=255)
gcgcgCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCcagcag < 1:2108880/92‑1 (MQ=255)
aCGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGGcagcag > 1:413814/1‑93 (MQ=255)
aCGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCcagcag > 1:4790420/1‑93 (MQ=255)
cgcgCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAgt < 2:3030961/93‑1 (MQ=255)
gcgccgCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAgtt < 1:697324/93‑1 (MQ=255)
|
GATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGGCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTT > NC_000913/3876505‑3876684
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCGGATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGGCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCGTT > NC_000913/3876502‑3876688
|
CCGGATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGC < SRR4302541.8488525/94‑1 (MQ=60)
GGATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTCCGCGCGCGCCGCGCCG > SRR4302541.1911327/1‑94 (MQ=60)
TCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTT < SRR4302541.7304107/94‑1 (MQ=60)
CGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTC < SRR4302541.2819560/94‑1 (MQ=60)
CGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTC < SRR4302541.1709084/94‑1 (MQ=60)
CGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGACGCGCCCCTTC > SRR4302541.7099806/1‑94 (MQ=60)
GCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCA < SRR4302541.494254/94‑1 (MQ=60)
CGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCTGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCAC < SRR4302541.5894757/94‑1 (MQ=60)
CGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACCCGCGCGACGCGCCGCTTTAC > SRR4302541.8489057/1‑94 (MQ=60)
GTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACG < SRR4302541.8448714/94‑1 (MQ=60)
TTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGG < SRR4302541.4543227/94‑1 (MQ=60)
TTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGG < SRR4302541.3821962/94‑1 (MQ=60)
TTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCCTTTTACGCGCGCGACGCGCCCCTTCACCG > SRR4302541.6040906/1‑94 (MQ=60)
TCCTGGCATTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGG < SRR4302541.943405/94‑1 (MQ=60)
CCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACCCGCGCGACGCGCCGCTTCACCGGC > SRR4302541.4520849/1‑94 (MQ=60)
GGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCCCGCGCGCGACGCGCCGCCTCACGGGCACG > SRR4302541.8541458/1‑94 (MQ=60)
GGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACG < SRR4302541.6655047/94‑1 (MQ=60)
GGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCCTTTCACGCGCGCGACGCGCCGCCTCCCCGGCACG > SRR4302541.4789226/1‑94 (MQ=60)
GCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGG < SRR4302541.3527217/94‑1 (MQ=60)
CAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGG < SRR4302541.4921090/94‑1 (MQ=60)
CAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGG < SRR4302541.4921091/94‑1 (MQ=60)
CAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGG > SRR4302541.1067113/1‑94 (MQ=60)
CGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGC < SRR4302541.6529022/94‑1 (MQ=60)
AGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCCTTTCACGCGCGCGGCGCGCCGCCTCACGGGCACGGGC > SRR4302541.2735507/1‑94 (MQ=60)
GTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCA < SRR4302541.4380969/94‑1 (MQ=60)
TCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCGCCTTTACGGCGGGTCATTTCCCGCGCGCGACGCGCCGCTTCACGGGCACGGGCAG < SRR4302541.450615/94‑1 (MQ=60)
TCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAG < SRR4302541.1888841/94‑1 (MQ=60)
TGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGCCGCGCCGCTTCACGGGCACGGGCAGCA < SRR4302541.2883212/94‑1 (MQ=60)
TGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCA < SRR4302541.313918/94‑1 (MQ=60)
TGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGGCGCGCCGCCTCACCGGCACGGGCCGCA > SRR4302541.1182819/1‑94 (MQ=60)
GCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCCCGGGCACGGGCcgcac > SRR4302541.485442/1‑89 (MQ=60)
GCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCAT < SRR4302541.2294354/94‑1 (MQ=60)
CCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATC < SRR4302541.4847742/94‑1 (MQ=60)
CCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATC < SRR4302541.1232404/94‑1 (MQ=60)
CCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCCTTTTACGCGCGCGACGCGCCGCTTCCCGGGCACCGGCAGgctc > SRR4302541.3124889/1‑90 (MQ=60)
CCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGGCGCGCCGCCTCACGGGCACGGGCAGCATC > SRR4302541.3124888/1‑94 (MQ=60)
CCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGCCGCGCCCCTTCACGGGCACGGGCAGCCTC > SRR4302541.6857760/1‑94 (MQ=60)
GTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTTACGCGCGCGACGCGCCGCCTCACCGGCACGGGGCGCATCGAT > SRR4302541.5768786/1‑94 (MQ=60)
GTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGAT < SRR4302541.6012375/94‑1 (MQ=60)
TTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATA < SRR4302541.3564365/94‑1 (MQ=60)
TTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCCCGCGCGCGACGCGCCGCCTCACCGGCCCGGGGAGCATCGATA > SRR4302541.8832607/1‑94 (MQ=60)
GTTGCCCGGCAGCCCCGCAAAGGCGAGCGCACCTTTACGGCGCGTCATTTCGCGCGCGCGACGCTCCGCTTCACGGGCACGGGCAGCATCGATA < SRR4302541.386055/94‑1 (MQ=60)
TTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAA < SRR4302541.1667606/94‑1 (MQ=60)
TTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAA < SRR4302541.3310993/94‑1 (MQ=60)
TTGCCCGGCAGGCCCGCTAAGCCGAGCGCCACTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAA < SRR4302541.1555596/94‑1 (MQ=60)
GCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGGACGGGCAGCACCGATAATT > SRR4302541.4618662/1‑94 (MQ=60)
GCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATT < SRR4302541.6092985/94‑1 (MQ=60)
CCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTT < SRR4302541.2370129/94‑1 (MQ=60)
CGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTG < SRR4302541.7052579/94‑1 (MQ=60)
CGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTG < SRR4302541.628986/94‑1 (MQ=60)
CGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGGATTTCACCCGCGCGACGCGCCGCTTCCCGGGCCCGGGGAGCCTCGATAATTTTG > SRR4302541.5335914/1‑94 (MQ=60)
CAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCA < SRR4302541.7975737/94‑1 (MQ=60)
AGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCCTTTCACGCGCGCGCAGCGCCGCTTCTAGAGCACGGGCAGCATCGATAATTTTtacaa > SRR4302541.4463139/1‑89 (MQ=60)
AGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGGCGCGCCCCTTCACCGGCACGGGCAGCCTCGATAATTTTGCCAA > SRR4302541.2944434/1‑94 (MQ=60)
AGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAA < SRR4302541.5550474/94‑1 (MQ=60)
AGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACCGGCACGGGCAGCATCGATAATTTTGCCCA > SRR4302541.4610654/1‑94 (MQ=60)
AGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCCTTTCACGCGCGCGGCGCGCCGCTTCACcgggacgggccgcctcgatcattttttcaa > SRR4302541.344096/1‑64 (MQ=60)
GGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAAC < SRR4302541.6565380/94‑1 (MQ=60)
GCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACC < SRR4302541.6677900/94‑1 (MQ=60)
GCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACC < SRR4302541.6677899/94‑1 (MQ=60)
GCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACC < SRR4302541.5572347/94‑1 (MQ=60)
GCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCCTCACGGGCACGGGCAGCATCGATAATTTTGCCAAAC > SRR4302541.2897988/1‑94 (MQ=60)
CCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCCTTTCACGCGCGCGCCGCGCCGCGTCACCGGCACGGGCAGCATCCGTAATTTTTCCAACCC > SRR4302541.3053071/1‑94 (MQ=60)
CCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGGCGCGGCGCTTCcccggcccgggcgggctccacaattttgtcaaacc > SRR4302541.1758982/1‑59 (MQ=60)
CGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACG < SRR4302541.6700654/94‑1 (MQ=60)
CGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACG < SRR4302541.7762595/94‑1 (MQ=60)
CGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACG < SRR4302541.82333/94‑1 (MQ=60)
CGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACG < SRR4302541.8580516/94‑1 (MQ=60)
CGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACG < SRR4302541.3133227/94‑1 (MQ=60)
GCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGCCGCGCCGCTTCACGGGCACGGGGGGCATCGATAATTTTGCCAACCACGA > SRR4302541.2672714/1‑94 (MQ=60)
CCTAAGTCGAGCGCACCTTTGCGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA < SRR4302541.2348285/94‑1 (MQ=60)
CTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACCCGCGCGACGCGCCGCTTCACCGGCACCGGCAGCATCGATAATTTTGCCCACCACGAT > SRR4302541.8509118/1‑94 (MQ=60)
CTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTTGCAACCACGAT > SRR4302541.5216717/1‑94 (MQ=60)
TAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGGCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATT < SRR4302541.3749097/94‑1 (MQ=60)
AAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTT < SRR4302541.5753058/94‑1 (MQ=60)
AGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTT < SRR4302541.4589209/94‑1 (MQ=60)
AGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTT < SRR4302541.2993256/94‑1 (MQ=60)
GTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTC < SRR4302541.8031481/94‑1 (MQ=60)
ATCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTC < SRR4302541.4539173/94‑1 (MQ=60)
TCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCG < SRR4302541.8868465/94‑1 (MQ=60)
TCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCG < SRR4302541.5467804/94‑1 (MQ=60)
TCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCG < SRR4302541.5647264/94‑1 (MQ=60)
TCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCG < SRR4302541.7624542/94‑1 (MQ=60)
TCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGACGCGCCGCTTCACCGGGACGGGGAGCATCGATAATTTTGCCAACCACGATTTTCG > SRR4302541.2968588/1‑94 (MQ=60)
GAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCG < SRR4302541.495162/94‑1 (MQ=60)
GAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCG < SRR4302541.8087451/94‑1 (MQ=60)
AGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGT > SRR4302541.5192666/1‑94 (MQ=60)
GCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTC < SRR4302541.4610458/94‑1 (MQ=60)
GCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTC < SRR4302541.8721906/94‑1 (MQ=60)
CGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCG < SRR4302541.3074306/94‑1 (MQ=60)
CGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCG < SRR4302541.3310479/94‑1 (MQ=60)
GCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGG < SRR4302541.6583732/94‑1 (MQ=60)
GCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGG > SRR4302541.1461906/1‑94 (MQ=60)
CACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCcccgcggt > SRR4302541.2232257/1‑86 (MQ=60)
CACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGT < SRR4302541.5428345/94‑1 (MQ=60)
CACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGT < SRR4302541.8075145/94‑1 (MQ=60)
CACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGT < SRR4302541.1000984/94‑1 (MQ=60)
CACCTTTACGGCGGGTCATTTCACGCGCGCGACCCGCCGCCTCACGGGCACGGGCAGCATCCATAATTTTTTCAACCACGATTTTCGCGGCGGT > SRR4302541.3749345/1‑94 (MQ=60)
accggtgcggcgagtcttttcgCGCGCGCGGCGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTT < SRR4302541.6413167/72‑1 (MQ=60)
CCTTTACGGCGGGTCATTTCACGGGCGGGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTG < SRR4302541.1921047/94‑1 (MQ=60)
CCTTTACGGCGGGTCATTTCACGCGCGCGGCGCGCCGCTTCACGGGGACGGGCAGCATCGATAATTTTGCCCACCACGATTTTTTCGTCGGGTG > SRR4302541.7951511/1‑94 (MQ=60)
CTTTACGGCGGGTCATTTCACGCGCGCGGCGCGCCGCCTCACCGGCACGGGCCGCATCGATAAATTTTGCAACCACGATTTTCGCGTCGGGTGG > SRR4302541.3164586/1‑94 (MQ=55)
TTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGT < SRR4302541.1905294/94‑1 (MQ=60)
TTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGT < SRR4302541.3282561/94‑1 (MQ=60)
TTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGT < SRR4302541.7234107/94‑1 (MQ=60)
TTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGT < SRR4302541.3428357/94‑1 (MQ=60)
TACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTT < SRR4302541.5230725/94‑1 (MQ=60)
TACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTT < SRR4302541.611070/94‑1 (MQ=60)
TACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTT < SRR4302541.1259954/94‑1 (MQ=60)
TACGGCGGGGCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACCATTTTCGCGTCGGTTGGGGT > SRR4302541.1211358/1‑94 (MQ=60)
ACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTT < SRR4302541.8262317/94‑1 (MQ=60)
ACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTT < SRR4302541.5013296/94‑1 (MQ=60)
CGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTT > SRR4302541.3612184/1‑94 (MQ=60)
GGCGGGTCATTTCACGCGCTCCACCCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTC < SRR4302541.2384699/94‑1 (MQ=60)
GGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCA < SRR4302541.2991604/94‑1 (MQ=60)
CGGGTCATTTCGCGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCA < SRR4302541.3854333/94‑1 (MQ=60)
GGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAG < SRR4302541.3105685/94‑1 (MQ=60)
GGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAG < SRR4302541.4807720/94‑1 (MQ=60)
GGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAG > SRR4302541.3764467/1‑94 (MQ=60)
GGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGC < SRR4302541.1743121/94‑1 (MQ=60)
GTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCA < SRR4302541.2786675/94‑1 (MQ=60)
TCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAG < SRR4302541.8371820/94‑1 (MQ=60)
CATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGG > SRR4302541.7987155/1‑94 (MQ=60)
CATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGG > SRR4302541.673792/1‑94 (MQ=60)
CATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGG > SRR4302541.1433820/1‑94 (MQ=60)
CATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGG < SRR4302541.2877774/94‑1 (MQ=60)
TTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTA < SRR4302541.948675/94‑1 (MQ=60)
TTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTAT < SRR4302541.3635200/94‑1 (MQ=60)
TCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATT > SRR4302541.1965888/1‑94 (MQ=60)
TCACGCGCGCGACGCACCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATT < SRR4302541.8480948/94‑1 (MQ=60)
CCGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCT < SRR4302541.4874652/94‑1 (MQ=60)
CGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTG < SRR4302541.5410930/94‑1 (MQ=60)
GCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGC > SRR4302541.7460623/1‑94 (MQ=60)
GCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGC > SRR4302541.2698502/1‑94 (MQ=60)
GCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGCATTCTGC > SRR4302541.4820803/1‑94 (MQ=60)
CGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCC < SRR4302541.4966341/94‑1 (MQ=60)
CGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAG > SRR4302541.8847828/1‑94 (MQ=60)
GCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGC > SRR4302541.2468442/1‑94 (MQ=60)
CGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCA < SRR4302541.119106/94‑1 (MQ=60)
CGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCA > SRR4302541.4427166/1‑94 (MQ=60)
CGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCA < SRR4302541.3353937/94‑1 (MQ=60)
GACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGGCAGCAG > SRR4302541.417653/1‑94 (MQ=60)
GACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAG > SRR4302541.4839301/1‑94 (MQ=60)
GCGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGT < SRR4302541.2129310/94‑1 (MQ=60)
CGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCCGCCGTT > SRR4302541.6376564/1‑94 (MQ=60)
CGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTT > SRR4302541.8209012/1‑94 (MQ=60)
CGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTT < SRR4302541.4069276/94‑1 (MQ=60)
CGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTT > SRR4302541.5095511/1‑94 (MQ=60)
CGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTT < SRR4302541.7758012/94‑1 (MQ=60)
GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTC < SRR4302541.130247/94‑1 (MQ=60)
GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTC < SRR4302541.703880/94‑1 (MQ=60)
GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTC > SRR4302541.3970168/1‑94 (MQ=60)
CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCG > SRR4302541.594639/1‑94 (MQ=60)
CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCG < SRR4302541.5039430/94‑1 (MQ=60)
CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCG < SRR4302541.7192220/94‑1 (MQ=60)
CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCG < SRR4302541.1701825/94‑1 (MQ=60)
GCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCGT > SRR4302541.2690709/1‑94 (MQ=60)
GCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCGT < SRR4302541.899737/94‑1 (MQ=60)
CCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCGTT < SRR4302541.2041762/94‑1 (MQ=60)
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CCGGATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGGCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCGTT > NC_000913/3876502‑3876688
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
