Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,876,595 |
G→C |
P385A (CCG→GCG) |
gyrB ← |
DNA gyrase subunit B |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,876,595 | 0 | G | C | 100.0%
| 576.5
/ NA
| 167 | P385A (CCG→GCG) | gyrB | DNA gyrase subunit B |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (20/147); total (20/147) |
Only 100 of 232 total aligned reads displayed.
GGATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGGCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTT > NC_000913/3876504‑3876684
|
ggATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGGCTTTTCCGCGCGCGGcgccgc > 1:4819406/1‑93 (MQ=255)
aTCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCCTTTCACGCGCGCGGCGcgccgc > 2:6160149/1‑93 (MQ=255)
aTCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGcgccgc < 2:381710/93‑1 (MQ=255)
tCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCAATTCACGCGCGCGGCGCGCCGCt > 2:5463807/1‑93 (MQ=255)
cgcgTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTCCGCGCGCGGCGcgccgcct > 2:6062735/1‑91 (MQ=255)
gTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTcac < 2:3794062/93‑1 (MQ=255)
ttCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTcacg < 1:2645011/93‑1 (MQ=255)
cTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTcacgggc < 2:3719800/93‑1 (MQ=255)
cTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGGCGCGCCGCTTcccgggc > 2:5682574/1‑93 (MQ=255)
cTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGACGCGCCGCCTcccgggg > 1:399866/1‑92 (MQ=255)
ggCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTcacgggcac < 2:5119878/93‑1 (MQ=255)
ggCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTcacgggcac < 2:4371205/93‑1 (MQ=255)
ggCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGTCTTTTACAAGCGCGACGCGCCGCTTctcgggcac > 1:4071660/1‑93 (MQ=255)
ggCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCCCGCGACGCGCCCCTTcaccgggac > 1:3632161/1‑93 (MQ=255)
gCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTcacgggcacg < 1:349380/93‑1 (MQ=255)
gCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCAATTCACCCGCGCGCCGCGCCGCCTcacggggccg > 1:1830042/1‑89 (MQ=255)
cAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTcacgggcacgg < 1:1013296/93‑1 (MQ=255)
cAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTcacgggcacgg < 2:6255599/93‑1 (MQ=255)
gTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTCCGCGCGCGGCGCGCCGCCTCacgggcacgggc > 2:456669/1‑93 (MQ=255)
gTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGGCGCGGCGCCTcaccgggaccggg > 1:2215038/1‑92 (MQ=255)
tCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCAcgggcacgggca < 2:4153890/93‑1 (MQ=255)
gCCATTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGgcagca < 1:3185360/93‑1 (MQ=255)
gCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCCTTTTACGCGCGGGCCGCGCCGCCTCACGGGGACCGgcagca > 1:228908/1‑93 (MQ=255)
ccAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCAt < 2:4773760/93‑1 (MQ=255)
aGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCTCGCGCGCGACGCGCCGCCTCACGGGCCCCGGGAGCACCg > 1:4296206/1‑93 (MQ=255)
ttGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTTACGCGCGCGGCGCGCCGCCTCACCGGCACGGGGCGCCTCGATa > 1:4326915/1‑93 (MQ=255)
ttGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATa < 2:2039726/93‑1 (MQ=255)
ttGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATa < 2:3547120/93‑1 (MQ=255)
tGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATaa < 2:186881/93‑1 (MQ=255)
tGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATaa < 1:5268632/93‑1 (MQ=255)
gCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAAt < 2:3061062/93‑1 (MQ=255)
gCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAAt < 1:6283492/93‑1 (MQ=255)
ccGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAAttt < 2:1652164/93‑1 (MQ=255)
cGGCAGGCCCGCTAAGTCGAGCGCACCTTTGCGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAAtttt < 2:867023/93‑1 (MQ=255)
cGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAAtttt < 2:725887/93‑1 (MQ=255)
cAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGcc < 2:594291/93‑1 (MQ=255)
agtcccGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCa < 2:2941202/90‑1 (MQ=255)
aGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGGCGCGCCGCTTCACGGGGACGGGCAGCATCGATAAATTTggcc > 1:4868421/1‑90 (MQ=255)
ggCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGGGCCGCTTCACCGGCACGGGGAGCATCGAAAATTTTGCCaa > 1:1560095/1‑93 (MQ=255)
gCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAACATCGATAATTTTGCCAAc < 1:6310707/93‑1 (MQ=255)
cccGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTTCCAAcc > 1:5021587/1‑93 (MQ=255)
cGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCCCGGGCACGGGCAGCATCGATAATTTTGCCAACCAc < 1:3803057/93‑1 (MQ=255)
cGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTTGCAACCAc > 2:3192145/1‑93 (MQ=255)
cGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCAc < 1:3383586/93‑1 (MQ=255)
gCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACg < 1:192710/93‑1 (MQ=255)
aaGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGAtt < 2:1793553/93‑1 (MQ=255)
aaGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGAtt < 2:1145908/93‑1 (MQ=255)
gTCGAGCGCACCTTTACGGCGGGTCATTTCCCGCGCGCGGCGCGCCGCTTCACGGGCACGGGCAGGATCGACTATTTTTTCAACCACGAtttt > 2:2211131/1‑93 (MQ=255)
gTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGAtttt < 2:5541432/93‑1 (MQ=255)
gTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGTCCACCACGAtttt > 2:119293/1‑93 (MQ=255)
cGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTcg < 2:808757/93‑1 (MQ=255)
gAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGACGCGCCGCCTCACGGGCACGGGCAGGATCGATAATTTTGCCAACCACGATTTTcgc > 2:1269246/1‑93 (MQ=255)
gcgcACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGt < 2:4725630/93‑1 (MQ=255)
gcgcACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGt < 1:1767609/93‑1 (MQ=255)
gcgcACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGt < 2:4617550/93‑1 (MQ=255)
gcgcACCTTTACGGCGGGGCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCAACATTTTTGCGt > 2:3881081/1‑93 (MQ=255)
gcACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCg < 2:1734145/93‑1 (MQ=255)
gcACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCg < 1:4576777/93‑1 (MQ=255)
gcACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCCTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCg > 2:5216843/1‑93 (MQ=255)
cccTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGt < 2:2542428/92‑1 (MQ=255)
cccTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGt < 1:1179126/92‑1 (MQ=255)
aCCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGt < 1:4115703/93‑1 (MQ=255)
aCCTTTACGGCGGGGTATTTTTGCCCCGCGACGCGGCCCTGGTCTGGGACGGGCGGCAGCTGTAAATTTTGCAACCACGAGTTTCGGGACGGt > 2:3375603/1‑93 (MQ=255)
ccTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGtt < 2:3249572/93‑1 (MQ=255)
ccTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGtt < 1:5934643/93‑1 (MQ=255)
ccTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCCTCACGGGCACGGGCAGGATCGATAACTTTGCCAACCACGATTTTCGcggcggat > 2:5597882/1‑91 (MQ=255)
tttACGGCGGGTCATTTCACGCGCGCGGCGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGAATTTCGCCTCGGGTgg > 2:2772348/1‑93 (MQ=255)
tttACGGCGGGTCATTTCACGCGCGCGACGCTCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTgg < 1:3240100/93‑1 (MQ=255)
tttACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTgg < 1:5760117/93‑1 (MQ=255)
cggcggGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGttt < 1:4667808/93‑1 (MQ=255)
cggcggGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGttt < 1:6440906/93‑1 (MQ=255)
ggcggGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGtttt < 2:3455776/93‑1 (MQ=255)
ggcggGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGtttt > 2:4458993/1‑93 (MQ=255)
cggGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTcc < 2:3413547/93‑1 (MQ=255)
gggTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCca > 2:5870595/1‑93 (MQ=255)
gggTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCca < 2:2241598/93‑1 (MQ=255)
cATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCcagcag < 2:235989/93‑1 (MQ=255)
acttCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAgg > 1:3350299/3‑93 (MQ=255)
aTTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAgg > 1:2672787/1‑93 (MQ=255)
aTTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAgg > 2:1015565/1‑93 (MQ=255)
aTTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAgg > 2:3731183/1‑93 (MQ=255)
tttCCCGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCTTCGGTTGGGTTTTCCAGCAGGt < 2:5269852/93‑1 (MQ=255)
tttCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGt < 1:3845125/93‑1 (MQ=255)
tttCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGt < 1:1314016/93‑1 (MQ=255)
ttCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTa < 1:2552654/93‑1 (MQ=255)
ttCACGCCCGCGCCGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAGCCACTATTTCCGCGTCGGTTGGATTTTCCAGCAGGTa < 1:1202908/93‑1 (MQ=255)
cACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTAtt > 1:3147655/1‑93 (MQ=255)
gcgcgcgACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTg < 2:5081312/93‑1 (MQ=255)
gcgcgcgACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTg < 1:4621926/93‑1 (MQ=255)
gcgcgcgACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTg > 2:6341109/1‑93 (MQ=255)
cgcgcgACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGc < 1:5621763/93‑1 (MQ=255)
gcgcgACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGcc < 2:2964175/93‑1 (MQ=255)
gcgACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCcag < 2:2453697/93‑1 (MQ=255)
cgACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCcagc < 1:1739455/93‑1 (MQ=255)
cgACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCcagc < 2:5278954/93‑1 (MQ=255)
gACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCcagca < 1:4510120/93‑1 (MQ=255)
gACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCcagca < 1:2360172/93‑1 (MQ=255)
cgcgCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAgt < 1:4046776/93‑1 (MQ=255)
cgcgCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAgt < 1:6259880/93‑1 (MQ=255)
cgcgCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAgt < 1:1851412/93‑1 (MQ=255)
|
GGATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGGCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTT > NC_000913/3876504‑3876684
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGGATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGGCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCG > NC_000913/3876503‑3876686
|
CGGATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCC < SRR4302534.5698023/94‑1 (MQ=60)
TCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTT < SRR4302534.3420177/94‑1 (MQ=60)
GTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCTAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACG < SRR4302534.6548602/94‑1 (MQ=60)
GTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACG < SRR4302534.4145144/94‑1 (MQ=60)
GTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGGATTTTACGCGCGCGGCG‑‑CGCCGCGTCACG > SRR4302534.4761404/1‑94 (MQ=60)
TTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGG < SRR4302534.2714949/94‑1 (MQ=60)
TCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGG < SRR4302534.5375025/94‑1 (MQ=60)
CCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGC < SRR4302534.1789455/94‑1 (MQ=60)
TGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGTCTTTTACAAGCGCGACG‑‑CGCCGCTTCTCGGGCAC > SRR4302534.4180916/1‑94 (MQ=60)
GGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCAATTCACCCGCGCGCCG‑‑CGCCGCCTCACGGGgccg > SRR4302534.1877641/1‑90 (MQ=60)
GCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGG < SRR4302534.358335/94‑1 (MQ=60)
CAGTGTGCCAGTTGGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGG < SRR4302534.416297/94‑1 (MQ=60)
CAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGG < SRR4302534.4618122/94‑1 (MQ=60)
CAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGG < SRR4302534.4898227/94‑1 (MQ=60)
CAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGG < SRR4302534.1039371/94‑1 (MQ=60)
CAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGGCG‑‑CGCCGCTTCACGGGGACGGG > SRR4302534.6433839/1‑94 (MQ=60)
AGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGGCG‑‑CGGCGCctcaccgggaccggg > SRR4302534.2273701/1‑79 (MQ=60)
GTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCA < SRR4302534.5905190/94‑1 (MQ=60)
GTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCA < SRR4302534.490313/94‑1 (MQ=60)
TCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAG < SRR4302534.596964/94‑1 (MQ=60)
TCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGCAG‑‑CGGCGCTTCgcggggccggggag > SRR4302534.5717655/1‑80 (MQ=60)
CCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAG < SRR4302534.6004142/94‑1 (MQ=60)
TGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCCTTTTACGCGCGGGCCG‑‑CGCCGCCTCACGGGGACCGGCAGCA > SRR4302534.234888/1‑94 (MQ=55)
GCCATTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCAT < SRR4302534.3269603/94‑1 (MQ=60)
GCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCAT < SRR4302534.2474589/94‑1 (MQ=60)
CCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CTCAGCTTCACGGGCACGGGCAGCATC < SRR4302534.3661334/94‑1 (MQ=60)
CAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCG < SRR4302534.3246429/94‑1 (MQ=60)
CAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCTCGCGCGCGACG‑‑CGCCGCCTCACGGGCcccgggagcaccg > SRR4302534.4412616/1‑81 (MQ=60)
AGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGA > SRR4302534.4207993/1‑94 (MQ=60)
TTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTTACGCGCGCGGCG‑‑CGCCGCCTCACCGGCACGGGGCGCCTCGATA > SRR4302534.4443968/1‑94 (MQ=60)
TTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAA < SRR4302534.1974434/94‑1 (MQ=60)
TGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAAT < SRR4302534.5410951/94‑1 (MQ=60)
GCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATT < SRR4302534.6453514/94‑1 (MQ=60)
CCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTT < SRR4302534.2410840/94‑1 (MQ=60)
CCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTT < SRR4302534.5269661/94‑1 (MQ=60)
CAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGGCG‑‑CGCCGCTTCACGGGGACGGGCAGCATCGATAAatttggcc > SRR4302534.5000484/1‑86 (MQ=60)
CAGGCACCCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCA < SRR4302534.2456642/94‑1 (MQ=60)
AGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑GGCCGCTTCACCGGCACGGGGAGCATCGAAAATTTTGCCAA > SRR4302534.1600929/1‑94 (MQ=60)
GCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACC < SRR4302534.153284/94‑1 (MQ=60)
GCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAACATCGATAATTTTGCCAACC < SRR4302534.6481320/94‑1 (MQ=60)
GCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTTCCAACC > SRR4302534.5157250/1‑94 (MQ=60)
CCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CCGCGCATCTCCGGCACCGGCAGCATCCATAATTTTGCCAAACA > SRR4302534.5123922/1‑94 (MQ=60)
CCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCAC < SRR4302534.1402374/94‑1 (MQ=60)
CGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCCCGGGCACGGGCAGCATCGATAATTTTGCCAACCACG < SRR4302534.3905175/94‑1 (MQ=60)
CGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACG < SRR4302534.3474299/94‑1 (MQ=60)
CGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGACG‑‑CGCCGCCTCACCGGGACGGGCAGCATCGATAAATTTTTCAACCACG > SRR4302534.4490852/1‑94 (MQ=55)
CGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGGCG‑‑CGCCGGCTCCCGGGCCCGGGGAGGATCGATAATTTTGTCAACCACG > SRR4302534.223338/1‑94 (MQ=42)
CGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAAACACG > SRR4302534.3076395/1‑94 (MQ=60)
GCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGA < SRR4302534.197750/94‑1 (MQ=60)
CTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGGAGCATCGATAATTTTGTCAACCACGAT > SRR4302534.5043772/1‑94 (MQ=60)
TAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATT < SRR4302534.4637003/94‑1 (MQ=60)
AAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGAGAATTTTGCCATCCACGATTT < SRR4302534.6476871/94‑1 (MQ=60)
AAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGACG‑‑CGCCGCCTCCCCGGCACGGGCAGCATCGATAATTTTTCCAAACACGATTT > SRR4302534.5595452/1‑94 (MQ=60)
GTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTC < SRR4302534.6120562/94‑1 (MQ=60)
GTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTC < SRR4302534.4307594/94‑1 (MQ=60)
TCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCG < SRR4302534.4239997/94‑1 (MQ=60)
TCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCG < SRR4302534.3927189/94‑1 (MQ=60)
TCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGGCG‑‑CGCCCCCTCACCGGGACGGGCAGCATCGATAATTTTGGCCACCACCATTTTCT > SRR4302534.4942164/1‑94 (MQ=40)
GAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGGCG‑‑CGCCGCTTTACGGGCAACGGCAGCCTCGATAATTTTGCCCACCACGATTTTCGCG > SRR4302534.2896415/1‑94 (MQ=60)
GAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCCCCGGCAGCATCGATAATTTTGCCAACCACCATTTTTGCG > SRR4302534.1618276/1‑94 (MQ=60)
AGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTTGCAAACACGATTTTTGCGT > SRR4302534.548616/1‑94 (MQ=60)
GCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTC < SRR4302534.1813515/94‑1 (MQ=60)
GCGCACCTTTACGGCGGGGCATTTCACGCGCGCGACG‑‑CGCCGCTTCACCGGCCCGGGCAGCATCGATAATTTTGGCAACCACGATTTTCTCGTC > SRR4302534.6546428/1‑94 (MQ=60)
CGCACCTTTACGGCGGGTCATTTTACCCGCGCGGCG‑‑CGCCCCTTCACGGGCACGGGGAGGATCGATAATTTTGTCAACCACCAATTTTGCGTCG > SRR4302534.4176393/1‑94 (MQ=36)
CGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCG < SRR4302534.2345031/94‑1 (MQ=60)
CGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCG < SRR4302534.4721485/94‑1 (MQ=60)
GCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGG < SRR4302534.4700902/94‑1 (MQ=60)
GCACCTTTACGGCGGGGCATTTCACGCGCGCGGCG‑‑CGCCGGTTCACCGGCACGGGCAGCGTCGATAATTTTGCCAACCAagctttttgcgccgg > SRR4302534.2535683/1‑79 (MQ=60)
CACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGT < SRR4302534.2679307/94‑1 (MQ=60)
CACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGT < SRR4302534.1680654/94‑1 (MQ=60)
CCCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTT < SRR4302534.1210120/94‑1 (MQ=60)
ACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTT < SRR4302534.1232508/94‑1 (MQ=60)
ACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTT < SRR4302534.4226437/94‑1 (MQ=60)
CCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTG < SRR4302534.6095806/94‑1 (MQ=60)
CCTTTACGGCGGGGCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGGTAATTTTTTCAACCACCATTTTCGCGTCGGGTG > SRR4302534.2345133/1‑94 (MQ=60)
TTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CTCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGG < SRR4302534.3326311/94‑1 (MQ=60)
TTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CTCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGG < SRR4302534.1829681/94‑1 (MQ=60)
TTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGG < SRR4302534.5916372/94‑1 (MQ=60)
ACGGCGGGTCATTTTACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGTCAACCACCATTTTTGCGTCGGGTGGGGTT > SRR4302534.1404664/1‑94 (MQ=60)
ACGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTT < SRR4302534.1993432/94‑1 (MQ=60)
CGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTT < SRR4302534.6614484/94‑1 (MQ=60)
CGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTT < SRR4302534.187329/94‑1 (MQ=60)
CGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTT < SRR4302534.27411/94‑1 (MQ=60)
CGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTT < SRR4302534.1261396/94‑1 (MQ=60)
CGGCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTT < SRR4302534.4794530/94‑1 (MQ=60)
GCGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCC < SRR4302534.2965015/94‑1 (MQ=60)
CGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCA < SRR4302534.6475230/94‑1 (MQ=60)
CGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCA < SRR4302534.3529064/94‑1 (MQ=60)
CGGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGGTGGGTTTTTCA > SRR4302534.5370523/1‑94 (MQ=60)
GGGTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAG > SRR4302534.4084496/1‑94 (MQ=60)
GTCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCA < SRR4302534.3401983/94‑1 (MQ=60)
TCATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAG < SRR4302534.1109092/94‑1 (MQ=60)
CATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGGCAACCACGATTTTCGCGCCGGTTGGGgttttctgcacg > SRR4302534.4661299/1‑82 (MQ=60)
CATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGG > SRR4302534.2743431/1‑94 (MQ=60)
CATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGG < SRR4302534.5068450/94‑1 (MQ=60)
CATTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGG < SRR4302534.3100411/94‑1 (MQ=60)
CACTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGG > SRR4302534.3440013/1‑94 (MQ=60)
AGTTCACGCGCGCGACGCTCGACG‑‑TCACGCGCACGGCCAGCATCGATAATTTTGCCATCCACGATTTTCGCGTCGGTGGGGTTTTCCAGCAGGT < SRR4302534.2709729/94‑1 (MQ=55)
TTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTA < SRR4302534.3636782/94‑1 (MQ=60)
TTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTA < SRR4302534.3948393/94‑1 (MQ=60)
TTTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTA < SRR4302534.1348659/94‑1 (MQ=60)
TTCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTAT < SRR4302534.2620333/94‑1 (MQ=60)
TTCACGCCCGCGCCG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAGCCACTATTTCCGCGTCGGTTGGATTTTCCAGCAGGTAT < SRR4302534.1234563/94‑1 (MQ=60)
TCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATT > SRR4302534.3962791/1‑94 (MQ=60)
TCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATT < SRR4302534.2199136/94‑1 (MQ=60)
TCACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATT > SRR4302534.3230452/1‑94 (MQ=60)
ACGCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCT < SRR4302534.4967890/94‑1 (MQ=60)
GCGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGC < SRR4302534.4747339/94‑1 (MQ=60)
CGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGTC > SRR4302534.4436870/1‑94 (MQ=60)
CGCGCGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCC < SRR4302534.5773887/94‑1 (MQ=60)
CGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGGCAGCA > SRR4302534.3462608/1‑94 (MQ=60)
CGACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCA < SRR4302534.1784622/94‑1 (MQ=60)
GACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAG < SRR4302534.3293865/94‑1 (MQ=60)
GACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAG < SRR4302534.2422816/94‑1 (MQ=60)
GACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAG < SRR4302534.4632251/94‑1 (MQ=60)
ACG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGT < SRR4302534.3778409/94‑1 (MQ=60)
CG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTT < SRR4302534.6429478/94‑1 (MQ=60)
CG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTT < SRR4302534.1899573/94‑1 (MQ=60)
CG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTT < SRR4302534.4155314/94‑1 (MQ=60)
CG‑‑CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCCGCTGGGGTTTCCAGCAGGGATTCTGGCAGCAGGT > SRR4302534.96776/1‑94 (MQ=60)
CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTTGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCG < SRR4302534.186936/94‑1 (MQ=60)
CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCG < SRR4302534.3250035/94‑1 (MQ=60)
CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCG < SRR4302534.3527298/94‑1 (MQ=60)
CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCG < SRR4302534.4072455/94‑1 (MQ=60)
CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCG < SRR4302534.975032/94‑1 (MQ=60)
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CGGATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACG‑‑CGGCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCG > NC_000913/3876503‑3876686
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
