Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
744 |
338.8 |
17650688 |
97.8% |
17262372 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,941,734 |
Δ1 bp |
noncoding (409/2906 nt) |
rrlC → |
23S ribosomal RNA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,941,734 | 0 | A | . | 96.5%
| 325.3
/ 16.1
| 197 | noncoding (409/2906 nt) | rrlC | 23S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base . (107/83); minor base G (3/4); total (110/87) |
| Fisher's exact test for biased strand distribution p-value = 7.02e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.86e-01 |
Only 100 of 218 total aligned reads displayed.
GATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGAGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAG > NC_000913/3941644‑3941799
|
gATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATgggggg > 2:5685899/1‑93 (MQ=25)
gATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATgggggg > 2:4909783/1‑93 (MQ=18)
gATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATgggggg < 2:4669393/93‑1 (MQ=18)
aTACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATggggggc > 2:8480651/1‑92 (MQ=25)
tACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATggggggcc > 2:1916439/1‑91 (MQ=255)
tACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGAc > 1:1286127/1‑93 (MQ=12)
tACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGAc > 2:7250552/1‑93 (MQ=12)
tACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGAc > 2:1876765/1‑93 (MQ=16)
aCAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGAcc > 2:7752725/1‑93 (MQ=16)
cAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCa > 1:4011161/1‑93 (MQ=16)
cAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCa > 1:255043/1‑93 (MQ=16)
cAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCa < 2:2682814/93‑1 (MQ=9)
aGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCAt > 2:4246472/1‑93 (MQ=9)
aGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCAt > 2:182137/1‑93 (MQ=16)
gggTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCAtc > 2:2094781/1‑93 (MQ=16)
gggTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCAtc > 2:5652090/1‑93 (MQ=16)
gggTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCAtc > 1:8231915/1‑93 (MQ=16)
ggTGACAGCCCCGTACACAAAAATGCACGTATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATA‑GGGGGGGACCAtcc > 1:1153214/1‑93 (MQ=11)
ggTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCAtcc < 1:3278435/93‑1 (MQ=9)
gTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGTCCAtcct > 1:6679362/1‑93 (MQ=9)
tGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCAtcctc < 2:8775958/93‑1 (MQ=9)
tGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCAtcctc < 2:6505511/93‑1 (MQ=9)
tGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCAtcctc > 2:5569674/1‑93 (MQ=12)
tGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCAtcctc > 2:4361832/1‑93 (MQ=16)
tGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCAtcctc < 2:3683498/93‑1 (MQ=9)
gACATCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGACCAtcctc > 2:7896866/1‑93 (MQ=255)
gACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCAtcctcc > 1:6779460/1‑93 (MQ=12)
aCAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCa > 2:1443075/1‑93 (MQ=9)
cAGCCCCTTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCaa < 1:684631/93‑1 (MQ=9)
cAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCaa < 2:2858604/93‑1 (MQ=9)
cAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCaa < 2:3609804/93‑1 (MQ=9)
cAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCaa < 1:6206379/93‑1 (MQ=9)
cAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCaa < 1:3998171/93‑1 (MQ=9)
cAGCCCCGCACACAAAAATGCACATATTGGGCGCTCGATGCGTAGGGCGGGACACGTGGTATCATGTCTTGATATGGG‑GGGACCATCCTTCaa > 2:8519357/1‑93 (MQ=11)
aGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAg > 1:600162/1‑93 (MQ=12)
aGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAg > 1:1796210/1‑93 (MQ=16)
aGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAg < 1:747067/93‑1 (MQ=9)
aGCCCCGTACAAAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAg < 2:7198377/93‑1 (MQ=9)
gCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAgg > 1:5322182/1‑93 (MQ=16)
gCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAgg > 2:7328084/1‑93 (MQ=12)
ccccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGc < 1:4597470/93‑1 (MQ=9)
ccccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGc > 2:4678507/1‑93 (MQ=12)
ccccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGc < 2:8348785/93‑1 (MQ=9)
cccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCt > 1:879958/1‑93 (MQ=16)
cccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCt > 2:1181070/1‑93 (MQ=16)
cccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCt < 1:5819241/93‑1 (MQ=9)
cGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTaa < 1:5561760/93‑1 (MQ=9)
gTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTaaa > 1:1014486/1‑93 (MQ=12)
gTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTaaa < 2:8593525/93‑1 (MQ=9)
gTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTaaa < 2:1424392/93‑1 (MQ=9)
tACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAAt < 1:3823787/93‑1 (MQ=9)
tACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAAt > 2:1248645/1‑93 (MQ=16)
tACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCAGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAAt > 2:586850/1‑93 (MQ=255)
acacAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATa < 1:922408/93‑1 (MQ=9)
acacAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATa < 1:4433204/93‑1 (MQ=9)
acacAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATa < 1:3260585/93‑1 (MQ=9)
acaaAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATa < 2:675730/93‑1 (MQ=9)
cacaAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATAc > 1:244830/1‑93 (MQ=16)
acaAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACt > 2:5843564/1‑93 (MQ=12)
acaAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGAG‑GGGACCATCCTCCAAGGCTAAATACt > 2:2183293/1‑93 (MQ=255)
caAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTc > 2:677125/1‑93 (MQ=16)
aaaaaTGCACATATTGTGAGCTCGATGAGTAGGGCTGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTcc > 2:5927281/1‑93 (MQ=255)
aaaaaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTcc < 1:1609610/93‑1 (MQ=9)
aaaaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCct < 2:8059390/93‑1 (MQ=9)
aaaaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCct < 2:7909122/93‑1 (MQ=9)
aaaaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCct < 1:2794073/93‑1 (MQ=9)
aaaaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCct > 2:6960403/1‑93 (MQ=12)
aaaaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCct < 2:2472988/93‑1 (MQ=9)
aaaaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCct > 1:6382044/1‑93 (MQ=16)
aaaaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCct < 1:2174668/93‑1 (MQ=9)
aaaaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCct > 1:2320803/1‑93 (MQ=9)
aaaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCctg > 1:7100162/1‑93 (MQ=16)
aaaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCctg > 2:2129577/1‑93 (MQ=16)
aaaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCctg < 2:3916569/93‑1 (MQ=9)
aaaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATAATCctg > 1:493358/1‑93 (MQ=255)
aaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGACCATCCTCCAAGGCTAAATACTCctg > 1:7708888/1‑93 (MQ=255)
aaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCctga > 1:4496526/1‑93 (MQ=9)
aaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCctga < 2:3267866/93‑1 (MQ=9)
aaTGCACATATCGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCctgc > 2:2899435/1‑92 (MQ=255)
aTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCctgac < 2:7398366/93‑1 (MQ=9)
aTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCctgac < 2:8727739/93‑1 (MQ=9)
aTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCctgac > 1:4980297/1‑93 (MQ=16)
aTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCctgac < 2:4961886/93‑1 (MQ=9)
aTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCctgac > 1:5173047/1‑93 (MQ=9)
aTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCctgac < 2:2289331/93‑1 (MQ=9)
tGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCctgact > 1:3510160/1‑93 (MQ=12)
tGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCctgact > 1:7796859/1‑93 (MQ=9)
gCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCctgactg > 2:6006/1‑93 (MQ=12)
gCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCctgactg < 1:4142450/93‑1 (MQ=9)
gCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCctgactg < 1:2423724/93‑1 (MQ=9)
cacaTATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCctgactga < 1:5953391/93‑1 (MQ=9)
cacaTATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCctgactga > 2:393234/1‑93 (MQ=12)
acaTATTGTGATCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCCtgactgac > 1:3717270/1‑93 (MQ=255)
acaTATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCCtgactgac < 1:1515209/93‑1 (MQ=9)
acaTATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCCtgactgac > 1:2865207/1‑93 (MQ=9)
acaTATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCCtgactgac < 1:3023347/93‑1 (MQ=9)
caTATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCCTGACTGAcc < 2:7693898/93‑1 (MQ=0)
caTATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCCTGACTGAcc < 2:7078244/93‑1 (MQ=0)
caTATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCCTGACTGAcc < 2:6602046/93‑1 (MQ=0)
acacGTGGTATCCTGTCTGAATATGGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAg < 1:2057965/93‑1 (MQ=18)
|
GATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGAGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAG > NC_000913/3941644‑3941799
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGAGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGG > NC_000913/3941641‑3941800
|
CGCGATACAGGGTGACAGCCCCGTACGCAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGCGGTATCCTGTCTGAATATGGGG < SRR4302541.1489847/94‑1 (MQ=21)
CGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGGTGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGG < SRR4302541.3043175/94‑1 (MQ=22)
CGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGG < SRR4302541.3906073/94‑1 (MQ=23)
CGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGG > SRR4302541.2232827/1‑94 (MQ=23)
GCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGG > SRR4302541.8654782/1‑94 (MQ=21)
GCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGG < SRR4302541.7342591/94‑1 (MQ=21)
GCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGG < SRR4302541.3930297/94‑1 (MQ=21)
GCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGG < SRR4302541.2126191/94‑1 (MQ=21)
GCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGG < SRR4302541.1983736/94‑1 (MQ=21)
CCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGG < SRR4302541.1036304/94‑1 (MQ=20)
CGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGG > SRR4302541.4246967/1‑94 (MQ=10)
CGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGG < SRR4302541.6887256/94‑1 (MQ=10)
CGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGG < SRR4302541.468649/94‑1 (MQ=10)
CGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGG > SRR4302541.3627610/1‑94 (MQ=10)
CGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGG < SRR4302541.2398235/94‑1 (MQ=10)
ATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGAC > SRR4302541.1298861/1‑94 (MQ=4)
ATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGAC < SRR4302541.1570507/94‑1 (MQ=4)
TACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACC > SRR4302541.2142001/1‑94 (MQ=2)
TACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACC > SRR4302541.8109090/1‑94 (MQ=2)
ACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCA > SRR4302541.6054760/1‑94 (MQ=0)
ACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCA > SRR4302541.4050839/1‑94 (MQ=0)
ACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCA > SRR4302541.257113/1‑94 (MQ=0)
CAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCAT > SRR4302541.4046753/1‑94 (MQ=0)
AGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGCCCATC > SRR4302541.5928948/1‑94 (MQ=6)
AGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATC > SRR4302541.6825282/1‑94 (MQ=0)
AGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATC > SRR4302541.5146716/1‑94 (MQ=0)
AGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATC > SRR4302541.8321652/1‑94 (MQ=0)
GGGTGACAGCCCCGTACACAAAAATGCACGTATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATA‑GGGGGGGACCATCC > SRR4302541.1164241/1‑94 (MQ=0)
GGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGTCCATCCT > SRR4302541.6748342/1‑94 (MQ=1)
GGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCT < SRR4302541.5063214/94‑1 (MQ=0)
GGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCT > SRR4302541.495145/1‑94 (MQ=0)
GGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCT < SRR4302541.3311491/94‑1 (MQ=0)
GTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTC > SRR4302541.2532359/1‑94 (MQ=0)
GTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTC < SRR4302541.5646989/94‑1 (MQ=0)
TGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCC > SRR4302541.6851961/1‑94 (MQ=0)
ACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAA < SRR4302541.1396448/94‑1 (MQ=0)
CAGCCCCTTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAG < SRR4302541.691087/94‑1 (MQ=0)
CAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAG < SRR4302541.5387557/94‑1 (MQ=0)
CAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAG > SRR4302541.605811/1‑94 (MQ=0)
CAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAG < SRR4302541.6269809/94‑1 (MQ=0)
CAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAG > SRR4302541.4130216/1‑94 (MQ=0)
CAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAG > SRR4302541.1813646/1‑94 (MQ=0)
CAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAG < SRR4302541.4037754/94‑1 (MQ=0)
AGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACTTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGG < SRR4302541.925731/94‑1 (MQ=0)
AGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGAGCATCCTCCAAGG > SRR4302541.7861265/1‑94 (MQ=0)
AGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGG > SRR4302541.5376961/1‑94 (MQ=0)
AGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGG < SRR4302541.754141/94‑1 (MQ=0)
GCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTATGGCGGGACACGTGGAATCCTGTCTGAATATGGG‑GGGGCCATCCTCCAAGGT > SRR4302541.6088869/1‑94 (MQ=0)
CCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCT < SRR4302541.3295137/94‑1 (MQ=0)
CCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCT > SRR4302541.887998/1‑94 (MQ=0)
CCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCT > SRR4302541.1882273/1‑94 (MQ=0)
CCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCT < SRR4302541.4644118/94‑1 (MQ=0)
CCCCGTACAAAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCT < SRR4302541.6862124/94‑1 (MQ=0)
CCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACTTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTA > SRR4302541.3322391/1‑94 (MQ=0)
CCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTA < SRR4302541.5878383/94‑1 (MQ=0)
CCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAA > SRR4302541.914793/1‑94 (MQ=0)
CCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAA < SRR4302541.7580792/94‑1 (MQ=0)
CCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTAGCCTGGCTGAGTATGGG‑GGGACCATCCTCCAAGGCTAA > SRR4302541.6962351/1‑94 (MQ=0)
CGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAA > SRR4302541.1023866/1‑94 (MQ=0)
CGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAA < SRR4302541.5618698/94‑1 (MQ=0)
TACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATA < SRR4302541.2759036/94‑1 (MQ=0)
TACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATA < SRR4302541.3862310/94‑1 (MQ=0)
ACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGCCACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTCAATAC > SRR4302541.246781/1‑94 (MQ=0)
ACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATAC < SRR4302541.931059/94‑1 (MQ=0)
ACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATAC < SRR4302541.1117508/94‑1 (MQ=0)
ACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATAC < SRR4302541.3293495/94‑1 (MQ=0)
ACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATAC > SRR4302541.35117/1‑94 (MQ=0)
ACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATAC > SRR4302541.246782/1‑94 (MQ=0)
ACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATAC < SRR4302541.4477761/94‑1 (MQ=0)
ACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTC > SRR4302541.2321834/1‑94 (MQ=0)
CAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCC < SRR4302541.6065042/94‑1 (MQ=0)
AAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCCT < SRR4302541.1625608/94‑1 (MQ=0)
AAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCCT > SRR4302541.1937058/1‑94 (MQ=0)
AAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCCT > SRR4302541.6447227/1‑94 (MQ=0)
AAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCCT > SRR4302541.2343323/1‑94 (MQ=0)
AAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCCT > SRR4302541.632165/1‑94 (MQ=0)
AAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCCT < SRR4302541.3771418/94‑1 (MQ=0)
AAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGCCCATCCTCCAAGGCTAAATACTCCTG > SRR4302541.2741374/1‑94 (MQ=0)
AAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCCTG < SRR4302541.2195682/94‑1 (MQ=0)
AAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCCTG > SRR4302541.1281275/1‑94 (MQ=0)
AAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCCTG > SRR4302541.7175722/1‑94 (MQ=0)
AAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCCTG < SRR4302541.2822300/94‑1 (MQ=0)
AAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATAATCCTG > SRR4302541.498014/1‑94 (MQ=0)
AAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGACCATCCTCCAAGGCTAAATACTCCTG > SRR4302541.7790867/1‑94 (MQ=33)
AAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCCTGC > SRR4302541.2397540/1‑94 (MQ=0)
AAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCCTGA > SRR4302541.4541871/1‑94 (MQ=0)
AATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCCTGAC > SRR4302541.5226284/1‑94 (MQ=0)
AATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCCTGAC > SRR4302541.5023584/1‑94 (MQ=0)
AATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCCTGAC > SRR4302541.5031376/1‑94 (MQ=0)
AATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCCTGAC < SRR4302541.2827626/94‑1 (MQ=0)
ATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCCTGACT > SRR4302541.7880632/1‑94 (MQ=0)
ATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCCTGACT > SRR4302541.3545433/1‑94 (MQ=0)
ATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCCTGACT > SRR4302541.4293664/1‑94 (MQ=0)
TGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCCTGACTG < SRR4302541.170890/94‑1 (MQ=0)
TGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCCTGACTG < SRR4302541.6455439/94‑1 (MQ=0)
TGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCCTGACTG > SRR4302541.4544506/1‑94 (MQ=0)
GCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCCTGACTGA < SRR4302541.2447661/94‑1 (MQ=0)
GCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCCTGACTGA < SRR4302541.4183390/94‑1 (MQ=0)
CACATATTGTGATCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCCTGACTGAC > SRR4302541.3754750/1‑94 (MQ=0)
CACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGG‑GGGACCATCCTCCAAGGCTAAATACTCCTGACTGAC < SRR4302541.6014067/94‑1 (MQ=0)
ATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGACCATCCTCCAAGGCTAAATCCTCCCGACTGACCGATAGTGAACCAGTA < SRR4302541.4513474/94‑1 (MQ=0)
ACACGTGGTATCCTGTCTGAATATGGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGG < SRR4302541.2077837/94‑1 (MQ=0)
|
CGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGAGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGG > NC_000913/3941641‑3941800
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
