Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 744 338.8 17650688 97.8% 17262372 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,979,546 Δ1 bp coding (1047/1386 nt) yifK → putative amino acid/amine transport protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,979,5450G.100.0% 2566.4 / NA 549coding (1046/1386 nt)yifKputative amino acid/amine transport protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base . (280/269);  total (280/269)

Only 100 of 587 total aligned reads displayed.

TTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATT‑G‑CTCATGCCTGGAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGATA  >  NC_000913/3979454‑3979633
                                                                                             |                                                                                        
  aCCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCTgaa                                                                                        <  1:3230884/93‑3 (MQ=255)
   ccGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCTgaac                                                                                       <  2:2375663/93‑4 (MQ=255)
    cggcggCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCTgaact                                                                                      >  2:3268304/1‑89 (MQ=255)
      gcggcAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTAc                                                                                   <  2:4295814/93‑1 (MQ=255)
      gcggcAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTAc                                                                                   >  1:3998839/1‑93 (MQ=255)
       cggcAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTAca                                                                                  >  1:1691915/1‑93 (MQ=255)
       cggcAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTAca                                                                                  <  1:2827847/93‑1 (MQ=255)
        ggcAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTAcat                                                                                 <  2:7132763/93‑1 (MQ=255)
        ggcAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTAcat                                                                                 >  2:7249287/1‑93 (MQ=255)
        ggcAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTAcat                                                                                 >  2:2669810/1‑93 (MQ=255)
         gcAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTAcatc                                                                                >  1:2445803/1‑93 (MQ=255)
         gcAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTAcatc                                                                                >  1:4133224/1‑93 (MQ=255)
           aaTGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTAcatcat                                                                              >  1:7608456/1‑93 (MQ=255)
            aTGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCAtt                                                                             <  1:7974335/93‑1 (MQ=255)
            aTGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCAtt                                                                             >  2:3117946/1‑93 (MQ=255)
            aTGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCAtt                                                                             <  2:5202750/93‑1 (MQ=255)
            aTGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCAtt                                                                             >  1:524463/1‑93 (MQ=255)
            aTGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCAtt                                                                             <  2:8568992/93‑1 (MQ=255)
             tGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTc                                                                            <  2:1236092/93‑1 (MQ=255)
              ggCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTcc                                                                           <  2:4082025/93‑1 (MQ=255)
              ggCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTcc                                                                           <  1:1283511/93‑1 (MQ=255)
               gCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTccc                                                                          <  2:1360154/93‑1 (MQ=255)
                cGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCa                                                                         >  1:8456733/1‑93 (MQ=255)
                 gAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCaa                                                                        <  1:8110483/93‑1 (MQ=255)
                 gAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCaa                                                                        <  2:3888897/93‑1 (MQ=255)
                  aaaGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAAt                                                                       >  1:8518150/1‑93 (MQ=255)
                   aaGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATc                                                                      <  2:5904756/93‑1 (MQ=255)
                   aaGTTTCCCGTCACGGCGTACCGGTTGCGGGTCGGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATc                                                                      <  1:6156174/93‑1 (MQ=255)
                    aGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATcc                                                                     >  2:4986749/1‑93 (MQ=255)
                     gTTTCCCGTCACGGCGTACCGGTTGCGGGGGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTACCAATCCg                                                                    >  2:3754751/1‑93 (MQ=255)
                      tttCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGc                                                                   <  1:2986479/93‑1 (MQ=255)
                       ttCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCa                                                                  <  2:1029840/93‑1 (MQ=255)
                        tCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAg                                                                 <  1:3562393/93‑1 (MQ=255)
                         cccGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGc                                                                <  1:1588613/93‑1 (MQ=255)
                          ccGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCg                                                               >  2:6817402/1‑93 (MQ=255)
                          ccGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCg                                                               <  1:4378487/93‑1 (MQ=255)
                           cGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgt                                                              <  1:2135131/93‑1 (MQ=255)
                            gTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgtg                                                             <  1:745355/93‑1 (MQ=255)
                               aCGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgtgtgt                                                          >  1:5725206/1‑93 (MQ=255)
                               aCGGCGTACCGGTTGCGGGTGTGGCAGTATCCATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgtgtgt                                                          >  2:3450140/1‑93 (MQ=255)
                                cGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGtt                                                         <  1:6946517/93‑1 (MQ=255)
                                cGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGtt                                                         <  2:47952/93‑1 (MQ=255)
                                 ggCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGttt                                                        >  1:721764/1‑93 (MQ=255)
                                  gCGTACCGGTTGCGGGCGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCCTTCCCAATCCGCAGCGTGTGTTTg                                                       >  2:6577549/1‑93 (MQ=255)
                                    gTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtc                                                     >  1:6353122/1‑93 (MQ=255)
                                    gTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtc                                                     >  2:141001/1‑93 (MQ=255)
                                    gTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtc                                                     >  2:4560593/1‑93 (MQ=255)
                                     tACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtct                                                    >  1:4660926/1‑93 (MQ=255)
                                      aCCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtcta                                                   <  2:8731559/93‑1 (MQ=255)
                                         ggTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctacgt                                                >  2:7506780/1‑93 (MQ=255)
                                          gTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctacgtc                                               <  1:2276449/93‑1 (MQ=255)
                                          gTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctacgtc                                               >  1:504777/1‑93 (MQ=255)
                                           ttGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctacgtct                                              >  1:7847033/1‑93 (MQ=255)
                                              ggggTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACa                                           <  1:544241/92‑1 (MQ=255)
                                               gggTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAg                                          <  1:3853550/93‑1 (MQ=255)
                                               gggTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAg                                          >  1:7524250/1‑93 (MQ=255)
                                                  tgtgGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGc                                       >  2:6892616/1‑93 (MQ=255)
                                                  tgtgGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGc                                       >  2:2047625/1‑93 (MQ=255)
                                                   gtgGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACCGTGcc                                      >  2:8075017/1‑93 (MQ=255)
                                                       cAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCg                                  <  1:3638212/93‑1 (MQ=255)
                                                         gTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTg                                >  2:7799269/1‑93 (MQ=255)
                                                          tATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGc                               <  1:834357/93‑1 (MQ=255)
                                                           aTCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCt                              <  1:3066672/93‑1 (MQ=255)
                                                           aTCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCt                              <  1:5549595/93‑1 (MQ=255)
                                                           aTCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCt                              <  2:2921394/93‑1 (MQ=255)
                                                           aTCTATTGCTATTCTGCTAATT‑GACTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCt                              <  2:5693279/93‑1 (MQ=255)
                                                            tCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCtt                             <  1:1197544/93‑1 (MQ=255)
                                                            tCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCtt                             >  1:6582351/1‑93 (MQ=255)
                                                            tCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCCTGCtt                             >  2:1635629/1‑93 (MQ=255)
                                                               aTTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCg                          <  2:1846641/93‑1 (MQ=255)
                                                               aTTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCg                          >  2:6237265/1‑93 (MQ=255)
                                                                ttGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCgg                         >  2:2484947/1‑93 (MQ=255)
                                                                ttGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCgg                         >  1:2002255/1‑93 (MQ=255)
                                                                ttGCTATGCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTACCAACCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCgg                         <  2:6715600/93‑1 (MQ=255)
                                                                 tGCTGTTCTGCTACTTGG‑CTCATGCCT‑GAACTACATCAGTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCggg                        <  2:3193033/93‑1 (MQ=255)
                                                                 tGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTGTGTCTACGTCTACAGTGCCAGCGTGCTTCCggg                        <  2:5505426/93‑1 (MQ=255)
                                                                    tATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGAt                     <  2:768098/93‑1 (MQ=255)
                                                                    tATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGAt                     <  1:5893645/93‑1 (MQ=255)
                                                                    tATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGCGGTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGAt                     >  1:3443458/1‑93 (MQ=255)
                                                                     aTTCTGCTAATTGG‑CTCATGCCT‑GAACTCCATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATg                    >  1:8755636/1‑93 (MQ=255)
                                                                     aTTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATg                    <  1:26500/93‑1 (MQ=255)
                                                                      ttCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATgg                   <  2:4639746/93‑1 (MQ=255)
                                                                       tCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGt                  <  1:6788247/93‑1 (MQ=255)
                                                                         tGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGc                >  1:7309436/1‑93 (MQ=255)
                                                                         tGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGc                >  2:6454868/1‑93 (MQ=255)
                                                                          gCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGcc               <  1:3366188/93‑1 (MQ=255)
                                                                           cTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGcct              >  1:1777365/1‑92 (MQ=255)
                                                                           cTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCa              >  1:8658185/1‑93 (MQ=255)
                                                                            tAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCAt             >  2:2143950/1‑93 (MQ=255)
                                                                            tAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCAt             <  1:4868506/93‑1 (MQ=255)
                                                                            tAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCAt             <  1:4437297/93‑1 (MQ=255)
                                                                              attgg‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATgg           <  2:3620770/89‑1 (MQ=255)
                                                                                  g‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGGCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTtg       <  2:2726448/93‑1 (MQ=255)
                                                                                     tCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTtgtg     >  2:4465158/1‑93 (MQ=255)
                                                                                       aTGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGat   >  2:8433992/1‑93 (MQ=255)
                                                                                       aTGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGat   >  1:1071099/1‑93 (MQ=255)
                                                                                       aTGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGat   <  1:4928643/93‑1 (MQ=255)
                                                                                       aTGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGat   <  2:6078726/93‑1 (MQ=255)
                                                                                       aTGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGat   >  2:113465/1‑93 (MQ=255)
                                                                                        tGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGata  <  1:5984561/93‑1 (MQ=255)
                                                                                             |                                                                                        
TTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATT‑G‑CTCATGCCTGGAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGATA  >  NC_000913/3979454‑3979633

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 333 total aligned reads displayed.
TTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATT‑GCTCATGCCTGGAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGATATTGATA  >  NC_000913/3979454‑3979639
                                                                                             |                                                                                             
TTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCTGA                                                                                               >  SRR4302541.8617015/1‑94 (MQ=60)
 TACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCTGAA                                                                                              <  SRR4302541.1700598/94‑1 (MQ=60)
  ACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAAC                                                                                            >  SRR4302541.3021373/1‑94 (MQ=60)
  ACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAAC                                                                                            <  SRR4302541.3114436/94‑1 (MQ=60)
   CCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTCTTGCTATTCTGCTAATTGGCTCATGCCT‑GAACT                                                                                           >  SRR4302541.3584352/1‑94 (MQ=60)
   CCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACT                                                                                           >  SRR4302541.3152290/1‑94 (MQ=60)
   CCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACT                                                                                           >  SRR4302541.7515518/1‑94 (MQ=60)
    CGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTA                                                                                          <  SRR4302541.6312723/94‑1 (MQ=60)
    CGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTA                                                                                          <  SRR4302541.2264610/94‑1 (MQ=60)
    CGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTA                                                                                          <  SRR4302541.6804875/94‑1 (MQ=60)
     GGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTAC                                                                                         >  SRR4302541.3926899/1‑94 (MQ=60)
       CGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACAT                                                                                       <  SRR4302541.6922859/94‑1 (MQ=60)
       CGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACAT                                                                                       <  SRR4302541.2856352/94‑1 (MQ=60)
       CGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACAT                                                                                       >  SRR4302541.2897479/1‑94 (MQ=60)
       CGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACAT                                                                                       >  SRR4302541.2897480/1‑94 (MQ=60)
       CGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACAT                                                                                       >  SRR4302541.1499845/1‑94 (MQ=60)
        GGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATC                                                                                      <  SRR4302541.5086371/94‑1 (MQ=60)
        GGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATC                                                                                      >  SRR4302541.2470090/1‑94 (MQ=60)
        GGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATC                                                                                      >  SRR4302541.7374253/1‑94 (MQ=60)
        GGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATC                                                                                      <  SRR4302541.5167421/94‑1 (MQ=60)
         gaaatgcaGAAAGTTGCCCGTCACGGCGTCCAGGTTGCGGGTGGTGCAGTCGCTATTGCTATTCTGCTAATTGGCGCATGCCT‑GAACTACATCA                                                                                     <  SRR4302541.4840322/86‑1 (MQ=19)
         GCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCA                                                                                     >  SRR4302541.1716312/1‑94 (MQ=60)
         GCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCA                                                                                     >  SRR4302541.6131558/1‑94 (MQ=60)
          CAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCAT                                                                                    <  SRR4302541.4453927/94‑1 (MQ=60)
          CAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCAT                                                                                    >  SRR4302541.5036962/1‑94 (MQ=60)
          CAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCAT                                                                                    >  SRR4302541.7689758/1‑94 (MQ=60)
          CAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCAT                                                                                    >  SRR4302541.3424683/1‑94 (MQ=60)
          CAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCAT                                                                                    >  SRR4302541.5639445/1‑94 (MQ=60)
           AATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATT                                                                                   >  SRR4302541.7642124/1‑94 (MQ=60)
           AATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATT                                                                                   >  SRR4302541.529370/1‑94 (MQ=60)
            ATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTC                                                                                  <  SRR4302541.1766120/94‑1 (MQ=60)
            ATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTC                                                                                  <  SRR4302541.8062196/94‑1 (MQ=60)
            ATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTC                                                                                  <  SRR4302541.4185099/94‑1 (MQ=60)
            ATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTC                                                                                  <  SRR4302541.3094531/94‑1 (MQ=60)
            ATGGAGAAAGTTTCCCGTCCCGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTC                                                                                  <  SRR4302541.790360/94‑1 (MQ=60)
               GCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCA                                                                               <  SRR4302541.8448251/94‑1 (MQ=60)
               GCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCA                                                                               >  SRR4302541.8547985/1‑94 (MQ=60)
               GCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCA                                                                               <  SRR4302541.7985960/94‑1 (MQ=60)
                CGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAA                                                                              <  SRR4302541.7357154/94‑1 (MQ=60)
                 GAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAAT                                                                             >  SRR4302541.4032898/1‑94 (MQ=60)
                    aggtgCCCGTCACGGCGTACCGGTTGCGGGTGGGGCAGTATCTATTTCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCG                                                                          <  SRR4302541.5127815/89‑1 (MQ=60)
                    AGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCG                                                                          <  SRR4302541.7585238/94‑1 (MQ=60)
                    AGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCG                                                                          <  SRR4302541.1098218/94‑1 (MQ=60)
                    AGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCG                                                                          >  SRR4302541.5726335/1‑94 (MQ=60)
                    AGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCG                                                                          >  SRR4302541.1273646/1‑94 (MQ=60)
                      TTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCA                                                                        >  SRR4302541.754277/1‑94 (MQ=60)
                      TTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCA                                                                        <  SRR4302541.3016615/94‑1 (MQ=60)
                       TTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAG                                                                       >  SRR4302541.6900117/1‑94 (MQ=60)
                        TCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGC                                                                      <  SRR4302541.234119/94‑1 (MQ=60)
                         CCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCG                                                                     <  SRR4302541.1604441/94‑1 (MQ=60)
                         CCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCG                                                                     >  SRR4302541.3694569/1‑94 (MQ=60)
                         CCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCG                                                                     <  SRR4302541.6002048/94‑1 (MQ=60)
                         CCCGTCACGGCGTACCGGTTGCGGGCGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCG                                                                     >  SRR4302541.284393/1‑94 (MQ=60)
                          CCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGT                                                                    <  SRR4302541.8110819/94‑1 (MQ=60)
                          CCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGT                                                                    <  SRR4302541.3667787/94‑1 (MQ=60)
                          CCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGT                                                                    >  SRR4302541.583157/1‑94 (MQ=60)
                          CCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGT                                                                    <  SRR4302541.4422239/94‑1 (MQ=60)
                           CGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTG                                                                   <  SRR4302541.2155783/94‑1 (MQ=60)
                           CGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTG                                                                   <  SRR4302541.3314214/94‑1 (MQ=60)
                           CGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTG                                                                   <  SRR4302541.5930672/94‑1 (MQ=60)
                            GTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGT                                                                  >  SRR4302541.1984493/1‑94 (MQ=60)
                             TCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTG                                                                 <  SRR4302541.8595082/94‑1 (MQ=60)
                              CACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGT                                                                >  SRR4302541.476939/1‑94 (MQ=60)
                              CACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGT                                                                >  SRR4302541.2367663/1‑94 (MQ=60)
                               ACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTT                                                               <  SRR4302541.3981411/94‑1 (MQ=60)
                                CGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTT                                                              <  SRR4302541.7020605/94‑1 (MQ=60)
                                 GGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGGCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTG                                                             <  SRR4302541.6823824/94‑1 (MQ=60)
                                  GCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGT                                                            <  SRR4302541.6236152/94‑1 (MQ=60)
                                  GCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGT                                                            <  SRR4302541.4955836/94‑1 (MQ=60)
                                   CGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTC                                                           >  SRR4302541.6418069/1‑94 (MQ=60)
                                   CGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTC                                                           >  SRR4302541.8174477/1‑94 (MQ=60)
                                   CGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGCGTGTTTGTC                                                           >  SRR4302541.1796137/1‑94 (MQ=60)
                                    GTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCT                                                          >  SRR4302541.1631667/1‑94 (MQ=60)
                                    GTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCT                                                          >  SRR4302541.1727762/1‑94 (MQ=60)
                                    GTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCT                                                          >  SRR4302541.8722306/1‑94 (MQ=60)
                                    GTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCT                                                          >  SRR4302541.4708389/1‑94 (MQ=60)
                                      ACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTAC                                                        <  SRR4302541.6388676/94‑1 (MQ=60)
                                      ACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTAC                                                        >  SRR4302541.7870776/1‑94 (MQ=60)
                                        CGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGT                                                      >  SRR4302541.5601408/1‑94 (MQ=60)
                                        CGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGT                                                      <  SRR4302541.2426125/94‑1 (MQ=60)
                                        CGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGT                                                      <  SRR4302541.3573364/94‑1 (MQ=60)
                                         GGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTC                                                     >  SRR4302541.5542465/1‑94 (MQ=60)
                                         GGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTC                                                     >  SRR4302541.8571254/1‑94 (MQ=60)
                                         GGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTC                                                     <  SRR4302541.3372626/94‑1 (MQ=60)
                                         GGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACATC                                                     >  SRR4302541.1476157/1‑94 (MQ=60)
                                          GTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCT                                                    >  SRR4302541.4362398/1‑94 (MQ=60)
                                          GTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCT                                                    <  SRR4302541.2298463/94‑1 (MQ=60)
                                           TTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTA                                                   <  SRR4302541.8119294/94‑1 (MQ=60)
                                           TTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTA                                                   <  SRR4302541.7990490/94‑1 (MQ=60)
                                           TGGCGGGTGTGGCAGTTTCTATTGCTATGCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTA                                                   <  SRR4302541.7990487/94‑1 (MQ=60)
                                            TGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTAC                                                  <  SRR4302541.8865910/94‑1 (MQ=60)
                                            TGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTAC                                                  <  SRR4302541.4748580/94‑1 (MQ=60)
                                             GCTGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACA                                                 <  SRR4302541.3323216/94‑1 (MQ=60)
                                             GCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACA                                                 <  SRR4302541.4620070/94‑1 (MQ=60)
                                              CGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAG                                                >  SRR4302541.7604648/1‑94 (MQ=60)
                                              CGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAG                                                >  SRR4302541.733301/1‑94 (MQ=60)
                                               GGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGT                                               <  SRR4302541.3892330/94‑1 (MQ=60)
                                               GGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCACAATCCGCAGCGTGTGTTTGTCTACGTCTACAGT                                               >  SRR4302541.3617575/1‑94 (MQ=60)
                                                GGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTG                                              <  SRR4302541.4211252/94‑1 (MQ=60)
                                                   GTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCA                                           >  SRR4302541.726248/1‑94 (MQ=60)
                                                   GTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTCTTTGTCTACGTCTACAGTGCCA                                           <  SRR4302541.1540723/94‑1 (MQ=60)
                                                    TGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAG                                          <  SRR4302541.2766746/94‑1 (MQ=60)
                                                     GGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGC                                         >  SRR4302541.5206506/1‑94 (MQ=60)
                                                      GCAGTAGCTAGTGCTAGTCTGCTAATTGGCTCATGCCT‑GAACTACATCAGTACCAAGCCGCAGCGTGTGCTTGTCTACGTCTACAGTGCCAGCG                                        <  SRR4302541.1358151/94‑1 (MQ=42)
                                                       CAGTATCTATTTCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGT                                       <  SRR4302541.7621087/94‑1 (MQ=60)
                                                       CAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGT                                       >  SRR4302541.1150232/1‑94 (MQ=60)
                                                       CAGTATCTATCGCGATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATGCCCAAGCCGCAGCGTGTGTTTGGCTACGTCTACAGTGCCAGCGT                                       >  SRR4302541.7898862/1‑94 (MQ=60)
                                                        AGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTG                                      <  SRR4302541.2022452/94‑1 (MQ=60)
                                                         GTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGC                                     >  SRR4302541.3810845/1‑94 (MQ=60)
                                                          TATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCT                                    <  SRR4302541.841924/94‑1 (MQ=60)
                                                          TATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCT                                    >  SRR4302541.7056131/1‑94 (MQ=60)
                                                          TATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCT                                    <  SRR4302541.5304512/94‑1 (MQ=60)
                                                           ATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTT                                   <  SRR4302541.2924783/94‑1 (MQ=60)
                                                           ATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTT                                   <  SRR4302541.5419716/94‑1 (MQ=60)
                                                           ATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTT                                   >  SRR4302541.6649722/1‑94 (MQ=60)
                                                             CTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCG                                 >  SRR4302541.1621822/1‑94 (MQ=60)
                                                             CTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCC                                 >  SRR4302541.5384479/1‑94 (MQ=60)
                                                              TATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCG                                >  SRR4302541.4955552/1‑94 (MQ=60)
                                                              TATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCG                                >  SRR4302541.1212022/1‑94 (MQ=60)
                                                               ATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGG                               >  SRR4302541.4059388/1‑94 (MQ=60)
                                                                TTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGG                              <  SRR4302541.5796624/94‑1 (MQ=60)
                                                                 TGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGG                             <  SRR4302541.2818845/94‑1 (MQ=60)
                                                                 TGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGG                             <  SRR4302541.3177399/94‑1 (MQ=60)
                                                                 TGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGG                             >  SRR4302541.4479366/1‑94 (MQ=60)
                                                                 TGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGCGCTTCCGGGG                             >  SRR4302541.1178007/1‑94 (MQ=60)
                                                                   CTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGAT                           <  SRR4302541.5606271/94‑1 (MQ=60)
                                                                   CTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGAT                           >  SRR4302541.8539945/1‑94 (MQ=60)
                                                                   CTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGAT                           <  SRR4302541.6639472/94‑1 (MQ=60)
                                                                   CTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGAT                           <  SRR4302541.6517905/94‑1 (MQ=60)
                                                                   CTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGAT                           >  SRR4302541.4633834/1‑94 (MQ=60)
                                                                   CTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGCGGTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGAT                           >  SRR4302541.3477867/1‑94 (MQ=60)
                                                                     ATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGG                         >  SRR4302541.5674333/1‑94 (MQ=60)
                                                                     ATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGG                         <  SRR4302541.3082762/94‑1 (MQ=60)
                                                                      TTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGT                        <  SRR4302541.325865/94‑1 (MQ=60)
                                                                      TTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGC                        <  SRR4302541.2662195/94‑1 (MQ=60)
                                                                       TCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTG                       <  SRR4302541.6860836/94‑1 (MQ=60)
                                                                        CTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGC                      >  SRR4302541.7387465/1‑94 (MQ=60)
                                                                        CTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGC                      <  SRR4302541.876566/94‑1 (MQ=60)
                                                                        CTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGC                      >  SRR4302541.414995/1‑94 (MQ=60)
                                                                        CTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGC                      >  SRR4302541.6972217/1‑94 (MQ=60)
                                                                          GCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCT                    >  SRR4302541.1794623/1‑94 (MQ=60)
                                                                          GCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCA                    >  SRR4302541.8750869/1‑94 (MQ=60)
                                                                          GCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCA                    <  SRR4302541.3399768/94‑1 (MQ=60)
                                                                          GCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCA                    <  SRR4302541.3441032/94‑1 (MQ=60)
                                                                           CTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCAT                   >  SRR4302541.507149/1‑94 (MQ=60)
                                                                           CTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCAT                   >  SRR4302541.1286759/1‑94 (MQ=60)
                                                                           CTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCAT                   <  SRR4302541.3642390/94‑1 (MQ=60)
                                                                            TAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATG                  >  SRR4302541.6897594/1‑94 (MQ=60)
                                                                            TAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATG                  >  SRR4302541.1821313/1‑94 (MQ=60)
                                                                            TAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATG                  <  SRR4302541.4481902/94‑1 (MQ=60)
                                                                            TAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATG                  <  SRR4302541.4918172/94‑1 (MQ=60)
                                                                            TAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATG                  >  SRR4302541.776561/1‑94 (MQ=60)
                                                                             AATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGG                 <  SRR4302541.5927148/94‑1 (MQ=60)
                                                                             AATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGG                 >  SRR4302541.2247156/1‑94 (MQ=60)
                                                                             AATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGG                 >  SRR4302541.8292584/1‑94 (MQ=60)
                                                                             AATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGG                 <  SRR4302541.8235252/94‑1 (MQ=60)
                                                                             AATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGG                 >  SRR4302541.5986648/1‑94 (MQ=60)
                                                                             AATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGAGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGG                 >  SRR4302541.8840924/1‑94 (MQ=60)
                                                                              ATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGT                >  SRR4302541.65467/1‑94 (MQ=60)
                                                                              ATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGT                <  SRR4302541.2051438/94‑1 (MQ=60)
                                                                              ATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGT                <  SRR4302541.7422999/94‑1 (MQ=60)
                                                                              ATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGT                >  SRR4302541.7229269/1‑94 (MQ=60)
                                                                               ttgGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTT               <  SRR4302541.2662533/91‑1 (MQ=60)
                                                                               TG‑GCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTT              <  SRR4302541.753651/94‑1 (MQ=60)
                                                                               TG‑GCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTT              <  SRR4302541.4431987/94‑1 (MQ=60)
                                                                                T‑GCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTG             <  SRR4302541.606388/94‑1 (MQ=60)
                                                                                G‑GCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTCCGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTG             >  SRR4302541.2084266/1‑94 (MQ=60)
                                                                                G‑GCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTG             <  SRR4302541.6843755/94‑1 (MQ=60)
                                                                                  GCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGT            <  SRR4302541.7448789/94‑1 (MQ=60)
                                                                                  GCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGT            <  SRR4302541.8808622/94‑1 (MQ=60)
                                                                                  GCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGT            >  SRR4302541.493603/1‑94 (MQ=60)
                                                                                   CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCacggcttccgtggccaggggctttcgggggtggtgccatgggtttgtg           >  SRR4302541.3507743/1‑46 (MQ=60)
                                                                                   CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTG           <  SRR4302541.3857096/94‑1 (MQ=60)
                                                                                   CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTG           >  SRR4302541.4125720/1‑94 (MQ=60)
                                                                                    TCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCCGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGA          >  SRR4302541.8601478/1‑94 (MQ=60)
                                                                                    TCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGA          <  SRR4302541.8254986/94‑1 (MQ=60)
                                                                                    TCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGA          <  SRR4302541.910133/94‑1 (MQ=60)
                                                                                    TCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGGGCCATGGTTTGTGA          >  SRR4302541.5956108/1‑94 (MQ=60)
                                                                                    TCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGCCTACGTCTCCAGTGCCACCGTGCTTCCGGagacggtgccctggcgtgtgt          >  SRR4302541.6205721/1‑73 (MQ=60)
                                                                                     CATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGAT         >  SRR4302541.885059/1‑94 (MQ=60)
                                                                                     CATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGAT         <  SRR4302541.8662061/94‑1 (MQ=60)
                                                                                     CATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGAT         >  SRR4302541.1081066/1‑94 (MQ=60)
                                                                                      ATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGgtt        >  SRR4302541.2595034/1‑91 (MQ=60)
                                                                                      ATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGATA        >  SRR4302541.8498132/1‑94 (MQ=60)
                                                                                      ATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGATA        >  SRR4302541.191853/1‑94 (MQ=60)
                                                                                      ATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGATA        <  SRR4302541.4978933/94‑1 (MQ=60)
                                                                                      ATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGGGCCAGCGTGCTTCCGGGGATGGTGCGATGGTTTGTGATT        >  SRR4302541.4287928/1‑94 (MQ=60)
                                                                                       TGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGATAT       >  SRR4302541.1395574/1‑94 (MQ=60)
                                                                                       TGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGATAT       <  SRR4302541.6045815/94‑1 (MQ=60)
                                                                                        GCCT‑GAACTACATCATTCCCAATACGCAGCGTGCGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGATATT      >  SRR4302541.4134051/1‑94 (MQ=60)
                                                                                        GCCT‑GAACTACATCATCCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCTTGCTTCCGGGGATGGTGCCATGGTTTGTGATATT      <  SRR4302541.5470929/94‑1 (MQ=60)
                                                                                         CCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGATATTG     <  SRR4302541.5592272/94‑1 (MQ=60)
                                                                                         CCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGATATTA     >  SRR4302541.1250329/1‑94 (MQ=60)
                                                                                           ctGAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGATATTGA    >  SRR4302541.2992520/3‑94 (MQ=60)
                                                                                           ctGAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGATATTGA    >  SRR4302541.248193/3‑94 (MQ=60)
                                                                                           ctGAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGATATTGA    <  SRR4302541.5486842/92‑1 (MQ=60)
                                                                                           ctGAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGATATTGA    >  SRR4302541.4169331/3‑94 (MQ=60)
                                                                                            TGAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGATATTGAT   >  SRR4302541.4538134/1‑94 (MQ=60)
                                                                                            TGAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGATATTGAT   >  SRR4302541.5818417/1‑94 (MQ=60)
                                                                                             GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGATATTGATA  >  SRR4302541.333445/1‑94 (MQ=60)
                                                                                             |                                                                                             
TTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATT‑GCTCATGCCTGGAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGATATTGATA  >  NC_000913/3979454‑3979639

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑