Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,979,546	Δ1 bp	coding (1047/1386 nt)	yifK →	putative amino acid/amine transport protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,979,545	0	G	.	100.0%	1069.4 / NA	227	coding (1046/1386 nt)	yifK	putative amino acid/amine transport protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (114/113); total (114/113)

Only 100 of 238 total aligned reads displayed.

TACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATT‑GCTCATGCCTGGAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGATATT  >  NC_000913/3979455‑3979635

tACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCTga                                                                                           >  2:172058/1‑92 (MQ=255)

  ccGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCTgaac                                                                                         <  2:3564672/93‑4 (MQ=255)

  ccGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCTgaac                                                                                         >  2:4254508/1‑90 (MQ=255)

     gcggcAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTAc                                                                                     >  1:4243757/1‑93 (MQ=255)

     gcggcAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTAc                                                                                     <  2:2985965/93‑1 (MQ=255)

       ggcAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTAcat                                                                                   >  2:133232/1‑93 (MQ=255)

       ggcAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTAcat                                                                                   >  2:4875410/1‑93 (MQ=255)

        gcAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTAcatc                                                                                  >  2:1120069/1‑93 (MQ=255)

         cAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTAcatca                                                                                 >  2:2521082/1‑93 (MQ=255)

         cAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTAcatca                                                                                 <  2:288817/93‑1 (MQ=255)

          aaTGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTAcatcat                                                                                >  2:5507908/1‑93 (MQ=255)

          aaTGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTAcatcat                                                                                <  1:6285373/93‑1 (MQ=255)

           aTGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCAtt                                                                               >  1:1562778/1‑93 (MQ=255)

           aTGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCAtt                                                                               <  2:222462/93‑1 (MQ=255)

           aTGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCAtt                                                                               >  2:2960634/1‑93 (MQ=255)

            tGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTc                                                                              >  1:4824389/1‑93 (MQ=255)

            tGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTc                                                                              >  1:436297/1‑93 (MQ=255)

             ggCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTcc                                                                             >  2:5217592/1‑93 (MQ=255)

             ggCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTcc                                                                             >  2:6028049/1‑93 (MQ=255)

               cGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCa                                                                           >  1:4083262/1‑93 (MQ=255)

                gAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCaa                                                                          >  1:2312496/1‑93 (MQ=255)

                gAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCaa                                                                          >  1:1507748/1‑93 (MQ=255)

                 aaaGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAAt                                                                         <  1:3037603/93‑1 (MQ=255)

                  aaGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATc                                                                        >  2:1545692/1‑93 (MQ=255)

                  aaGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATc                                                                        <  1:856429/93‑1 (MQ=255)

                  aaGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATc                                                                        <  2:727435/93‑1 (MQ=255)

                   aGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATcc                                                                       <  2:3325565/93‑1 (MQ=255)

                    gTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCg                                                                      >  1:6250707/1‑93 (MQ=255)

                      ttCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCa                                                                    <  2:2092237/93‑1 (MQ=255)

                      ttCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCa                                                                    <  2:849856/93‑1 (MQ=255)

                        cccGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGc                                                                  <  2:3259595/93‑1 (MQ=255)

                        cccGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGc                                                                  <  2:6262362/93‑1 (MQ=255)

                        cccGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGc                                                                  >  2:966720/1‑93 (MQ=255)

                          cGTCACGGCGTGCCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgt                                                                <  1:1046105/93‑1 (MQ=255)

                           gTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgtg                                                               >  1:2379812/1‑93 (MQ=255)

                           gTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgtg                                                               >  2:382350/1‑93 (MQ=255)

                           gTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgtg                                                               >  1:2248437/1‑93 (MQ=255)

                           gTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgtg                                                               >  2:2189488/1‑93 (MQ=255)

                              ccGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgtgtgt                                                            <  1:3892323/92‑1 (MQ=255)

                              aCGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgtgtgt                                                            <  1:5040984/93‑1 (MQ=255)

                              aCGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgtgtgt                                                            >  2:1638945/1‑93 (MQ=255)

                              aCGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgtgtgt                                                            <  2:4037531/93‑1 (MQ=255)

                               cGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGtt                                                           >  1:493268/1‑93 (MQ=255)

                                  cGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgt                                                        <  2:4298014/93‑1 (MQ=255)

                                    tACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtct                                                      >  1:1929813/1‑93 (MQ=255)

                                     aCCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtcta                                                     >  2:621166/1‑93 (MQ=255)

                                         gTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctacgtc                                                 >  2:4711298/1‑93 (MQ=255)

                                         gTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctacgtc                                                 >  2:6156759/1‑93 (MQ=255)

                                         gTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctacgtc                                                 >  2:23867/1‑93 (MQ=255)

                                          ttGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctacgtct                                                <  1:1827418/93‑1 (MQ=255)

                                           tGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctccgtcta                                               >  1:960009/1‑93 (MQ=255)

                                            gCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctacgtctac                                              <  1:4419332/93‑1 (MQ=255)

                                             cGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACa                                             >  1:3571768/1‑93 (MQ=255)

                                              gggTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAg                                            <  1:1354462/93‑1 (MQ=255)

                                              gggTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAg                                            <  2:4596967/93‑1 (MQ=255)

                                              gggTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAg                                            <  1:775211/93‑1 (MQ=255)

                                              gggTGTGGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAg                                            <  1:4181728/93‑1 (MQ=255)

                                               ggggtgGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGt                                           <  1:2362338/90‑1 (MQ=255)

                                                  gtgGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGcc                                        <  2:2560626/93‑1 (MQ=255)

                                                   tgGCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCa                                       <  2:493268/93‑1 (MQ=255)

                                                     gCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGc                                     >  1:219014/1‑93 (MQ=255)

                                                     gCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGc                                     >  2:2011278/1‑93 (MQ=255)

                                                     gCAGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGc                                     <  1:5770205/93‑1 (MQ=255)

                                                       aGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGt                                   >  1:3971735/1‑93 (MQ=255)

                                                       aGTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGt                                   >  2:5805068/1‑93 (MQ=255)

                                                        gTATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTg                                  <  1:3157725/93‑1 (MQ=255)

                                                         tATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGc                                 <  2:2331437/93‑1 (MQ=255)

                                                         tATCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGc                                 >  2:1216491/1‑93 (MQ=255)

                                                           tCTATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCtt                               <  2:1257685/93‑1 (MQ=255)

                                                             tATTGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTcc                             >  2:5299030/1‑93 (MQ=255)

                                                               ttGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCgg                           >  1:5269643/1‑93 (MQ=255)

                                                               ttGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCgg                           >  2:6416073/1‑93 (MQ=255)

                                                               ttGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCgg                           >  2:1713150/1‑93 (MQ=255)

                                                                tGCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCggg                          <  1:2685143/93‑1 (MQ=255)

                                                                 tcTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCgggg                         <  1:6009868/92‑1 (MQ=255)

                                                                 gCTATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCgggg                         <  1:5202585/93‑1 (MQ=255)

                                                                   tATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGAt                       <  1:3361288/93‑1 (MQ=255)

                                                                   tATTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGAt                       >  1:1743280/1‑93 (MQ=255)

                                                                    aTTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATg                      <  2:4637211/93‑1 (MQ=255)

                                                                    aTTCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATg                      >  1:1142890/1‑93 (MQ=255)

                                                                     ttCTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATgg                     <  1:366772/93‑1 (MQ=255)

                                                                       cTGCTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTg                   >  2:3532284/1‑93 (MQ=255)

                                                                          cTAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCa                >  1:2676169/1‑93 (MQ=255)

                                                                           tAATTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCAt               <  2:2916676/93‑1 (MQ=255)

                                                                             attggCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATgg             >  1:2023293/5‑93 (MQ=255)

                                                                             attggCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATgg             <  1:4604897/89‑1 (MQ=255)

                                                                              ttggCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGt            <  1:3841206/90‑1 (MQ=255)

                                                                                ggCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGttt          >  2:3169655/2‑93 (MQ=255)

                                                                                 gCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTGCGGGGATGGTGCCATGGTTtg         >  1:5688183/1‑93 (MQ=255)

                                                                                 gCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTtg         >  1:2619480/1‑93 (MQ=255)

                                                                                  cTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTtgt        <  1:1014846/93‑1 (MQ=255)

                                                                                   tCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTtgtg       >  2:30398/1‑93 (MQ=255)

                                                                                   tCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTtgtg       >  1:893816/1‑93 (MQ=255)

                                                                                   tCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGCTGCCATGGTTtgtg       >  1:738398/1‑93 (MQ=255)

                                                                                     aTGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGat     <  2:2773493/93‑1 (MQ=255)

                                                                                     aTGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGat     >  1:2878465/1‑93 (MQ=255)

                                                                                      tGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGata    <  1:2080828/93‑1 (MQ=255)

                                                                                      tGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGata    <  2:3706402/93‑1 (MQ=255)

                                                                                      tGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGata    >  1:3428727/1‑93 (MQ=255)

                                                                                         ccggAGCTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGATAtt  <  2:5589616/91‑1 (MQ=255)

TACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATT‑GCTCATGCCTGGAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGATATT  >  NC_000913/3979455‑3979635

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATT‑G‑CTCATGCCTGGAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGATATTGATA  >  NC_000913/3979454‑3979639

TTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCTGA                                                                                               >  SRR4302534.3112019/1‑94 (MQ=60)

  ACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAAC                                                                                            <  SRR4302534.2252503/94‑1 (MQ=60)

   CCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACT                                                                                           >  SRR4302534.641345/1‑94 (MQ=60)

     GGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTAC                                                                                         >  SRR4302534.4358210/1‑94 (MQ=60)

       CGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACAT                                                                                       >  SRR4302534.5246026/1‑94 (MQ=60)

       CGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACAT                                                                                       <  SRR4302534.1060173/94‑1 (MQ=60)

        ggcgcTGGCGAAAATTTCCCGTCGCGGCGTATCGGTGGCGGGTGTGCCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATC                                                                                      <  SRR4302534.4357671/89‑1 (MQ=55)

        GGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATC                                                                                      >  SRR4302534.705719/1‑94 (MQ=60)

        GGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATC                                                                                      <  SRR4302534.5874248/94‑1 (MQ=60)

        GGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATC                                                                                      <  SRR4302534.912809/94‑1 (MQ=60)

           AATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATT                                                                                   >  SRR4302534.235054/1‑94 (MQ=60)

           AATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATT                                                                                   <  SRR4302534.4898514/94‑1 (MQ=60)

           AATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATT                                                                                   >  SRR4302534.1603681/1‑94 (MQ=60)

           AATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATT                                                                                   <  SRR4302534.6455430/94‑1 (MQ=60)

           AATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATT                                                                                   <  SRR4302534.4713312/94‑1 (MQ=60)

            ATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTC                                                                                  >  SRR4302534.4955315/1‑94 (MQ=60)

            ATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTC                                                                                  >  SRR4302534.2926820/1‑94 (MQ=60)

            ATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTC                                                                                  >  SRR4302534.447415/1‑94 (MQ=60)

             TGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCC                                                                                 <  SRR4302534.4183309/94‑1 (MQ=60)

             TGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCC                                                                                 <  SRR4302534.3974814/94‑1 (MQ=60)

             TGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCC                                                                                 <  SRR4302534.2752341/94‑1 (MQ=60)

               GCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCA                                                                               >  SRR4302534.4192885/1‑94 (MQ=60)

                CGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAA                                                                              <  SRR4302534.1767531/94‑1 (MQ=60)

                CGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAA                                                                              >  SRR4302534.2373861/1‑94 (MQ=60)

                CGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAA                                                                              >  SRR4302534.1547407/1‑94 (MQ=60)

                  AAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATC                                                                            <  SRR4302534.3117255/94‑1 (MQ=60)

                  AAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATC                                                                            >  SRR4302534.3329289/1‑94 (MQ=60)

                   AAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCC                                                                           <  SRR4302534.4326924/94‑1 (MQ=60)

                   AAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCC                                                                           <  SRR4302534.878043/94‑1 (MQ=60)

                   AAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAAATACATCATTCCCAATCC                                                                           >  SRR4302534.2388117/1‑94 (MQ=60)

                    AGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCG                                                                          >  SRR4302534.6420191/1‑94 (MQ=60)

                    AGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCG                                                                          <  SRR4302534.3453367/94‑1 (MQ=60)

                     GTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGC                                                                         >  SRR4302534.2735813/1‑94 (MQ=60)

                       TTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAG                                                                       >  SRR4302534.3730650/1‑94 (MQ=60)

                       TTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAG                                                                       <  SRR4302534.1210732/94‑1 (MQ=60)

                        TCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGC                                                                      >  SRR4302534.3569342/1‑94 (MQ=60)

                         CCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCG                                                                     <  SRR4302534.5154971/94‑1 (MQ=60)

                           CGTCACGGCGTGCCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTG                                                                   <  SRR4302534.1073142/94‑1 (MQ=60)

                           CGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTG                                                                   >  SRR4302534.2308028/1‑94 (MQ=60)

                           CGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTG                                                                   >  SRR4302534.2443043/1‑94 (MQ=60)

                             TCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTG                                                                 >  SRR4302534.5370014/1‑94 (MQ=60)

                             TCACGGCGTACCGGGTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTG                                                                 >  SRR4302534.5552779/1‑94 (MQ=60)

                               CCGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTT                                                               <  SRR4302534.3996807/94‑1 (MQ=60)

                               ACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTT                                                               <  SRR4302534.5177123/94‑1 (MQ=60)

                               ACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTT                                                               >  SRR4302534.505572/1‑94 (MQ=60)

                               ACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTT                                                               <  SRR4302534.4237940/94‑1 (MQ=60)

                                CGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTT                                                              <  SRR4302534.1969555/94‑1 (MQ=60)

                                   CGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTC                                                           >  SRR4302534.645256/1‑94 (MQ=60)

                                    GTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCT                                                          <  SRR4302534.813091/94‑1 (MQ=60)

                                    GTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCT                                                          >  SRR4302534.1980272/1‑94 (MQ=60)

                                    GTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCT                                                          <  SRR4302534.5095545/94‑1 (MQ=60)

                                     TACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTA                                                         <  SRR4302534.2468744/94‑1 (MQ=60)

                                     TACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTA                                                         <  SRR4302534.1699287/94‑1 (MQ=60)

                                     TACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTA                                                         >  SRR4302534.1261398/1‑94 (MQ=60)

                                      ACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTAC                                                        >  SRR4302534.2163861/1‑94 (MQ=60)

                                      ACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTAC                                                        <  SRR4302534.5509109/94‑1 (MQ=60)

                                        CGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGT                                                      >  SRR4302534.4366181/1‑94 (MQ=60)

                                           TTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTCCGTCTA                                                   >  SRR4302534.984463/1‑94 (MQ=60)

                                           TTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTA                                                   <  SRR4302534.1874954/94‑1 (MQ=60)

                                             GCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACA                                                 >  SRR4302534.3667838/1‑94 (MQ=60)

                                             GCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACA                                                 <  SRR4302534.4538647/94‑1 (MQ=60)

                                              CGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAG                                                <  SRR4302534.4126494/94‑1 (MQ=60)

                                              CGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAG                                                <  SRR4302534.2586508/94‑1 (MQ=60)

                                              CGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAG                                                >  SRR4302534.4360321/1‑94 (MQ=60)

                                              CGGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAG                                                >  SRR4302534.6055773/1‑94 (MQ=60)

                                               GGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGT                                               <  SRR4302534.4294731/94‑1 (MQ=60)

                                               GGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGT                                               <  SRR4302534.1390161/94‑1 (MQ=60)

                                               GGGTGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGT                                               <  SRR4302534.794529/94‑1 (MQ=60)

                                                GGGGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTG                                              <  SRR4302534.2425045/94‑1 (MQ=60)

                                                  TGTGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCC                                            >  SRR4302534.353963/1‑94 (MQ=60)

                                                    TGGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAG                                          >  SRR4302534.2794957/1‑94 (MQ=60)

                                                     GGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGC                                         >  SRR4302534.224756/1‑94 (MQ=60)

                                                     GGCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGC                                         <  SRR4302534.925190/94‑1 (MQ=60)

                                                      GCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCG                                        <  SRR4302534.5926737/94‑1 (MQ=60)

                                                      GCAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCG                                        <  SRR4302534.78186/94‑1 (MQ=60)

                                                       CAGTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGT                                       >  SRR4302534.4078041/1‑94 (MQ=60)

                                                         GTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGC                                     <  SRR4302534.150020/94‑1 (MQ=60)

                                                         GTATCTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGC                                     <  SRR4302534.3240905/94‑1 (MQ=60)

                                                             CTATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCC                                 <  SRR4302534.1139929/94‑1 (MQ=60)

                                                              TATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTGTGTCTACGTCTACAGTGCCAGCGTGCTTCCG                                <  SRR4302534.6187687/94‑1 (MQ=60)

                                                               ATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGG                               >  SRR4302534.5411990/1‑94 (MQ=60)

                                                               ATTGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGG                               >  SRR4302534.4017706/1‑94 (MQ=60)

                                                                 TGCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGG                             <  SRR4302534.2756116/94‑1 (MQ=60)

                                                                  TCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGA                            <  SRR4302534.6173158/94‑1 (MQ=60)

                                                                  GCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGA                            <  SRR4302534.5342933/94‑1 (MQ=60)

                                                                  GCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGA                            >  SRR4302534.1974337/1‑94 (MQ=60)

                                                                  GCTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGA                            >  SRR4302534.2438412/1‑94 (MQ=60)

                                                                   CTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGAT                           >  SRR4302534.1788525/1‑94 (MQ=60)

                                                                   CTATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGAT                           <  SRR4302534.2097319/94‑1 (MQ=60)

                                                                   CTATTCTGCTAATT‑GCCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGAT                           <  SRR4302534.4520742/94‑1 (MQ=60)

                                                                    TATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATG                          <  SRR4302534.3451321/94‑1 (MQ=60)

                                                                    TATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATG                          >  SRR4302534.1172815/1‑94 (MQ=60)

                                                                    TATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATG                          >  SRR4302534.5043316/1‑94 (MQ=60)

                                                                     ATTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGG                         >  SRR4302534.629013/1‑94 (MQ=60)

                                                                      TTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGT                        <  SRR4302534.559292/94‑1 (MQ=60)

                                                                      TTCTGCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGT                        <  SRR4302534.376137/94‑1 (MQ=60)

                                                                          GCTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCA                    >  SRR4302534.2746924/1‑94 (MQ=60)

                                                                           CTAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCAT                   >  SRR4302534.2391154/1‑94 (MQ=60)

                                                                            TAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATG                  >  SRR4302534.4017550/1‑94 (MQ=60)

                                                                            TAATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATG                  >  SRR4302534.313806/1‑94 (MQ=60)

                                                                             AATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGGTGGTGCCATGG                 >  SRR4302534.2028522/1‑94 (MQ=60)

                                                                             AATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGG                 >  SRR4302534.2076220/1‑94 (MQ=60)

                                                                             AATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGG                 <  SRR4302534.3298941/94‑1 (MQ=60)

                                                                              ATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGT                >  SRR4302534.3242175/1‑94 (MQ=60)

                                                                              ATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGT                <  SRR4302534.4729856/94‑1 (MQ=60)

                                                                              ATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGT                >  SRR4302534.3823819/1‑94 (MQ=60)

                                                                              ATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGT                <  SRR4302534.2231516/94‑1 (MQ=60)

                                                                              ATTGG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGT                <  SRR4302534.1835373/94‑1 (MQ=60)

                                                                               ttgG‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTT               <  SRR4302534.3944386/91‑1 (MQ=60)

                                                                               TG‑G‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTT              >  SRR4302534.159286/1‑94 (MQ=60)

                                                                               TG‑G‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTT              >  SRR4302534.1011974/1‑94 (MQ=60)

                                                                                G‑G‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTGCGGGGATGGTGCCATGGTTTG             >  SRR4302534.5842239/1‑94 (MQ=60)

                                                                                G‑G‑CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTG             >  SRR4302534.2688796/1‑94 (MQ=60)

                                                                                    CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTG           <  SRR4302534.1040965/94‑1 (MQ=60)

                                                                                    CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTG           >  SRR4302534.916460/1‑94 (MQ=60)

                                                                                    CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTG           <  SRR4302534.3979077/94‑1 (MQ=60)

                                                                                    CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTG           >  SRR4302534.3212946/1‑94 (MQ=60)

                                                                                    CTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGCTGCCATGGTTTGTG           >  SRR4302534.756666/1‑94 (MQ=60)

                                                                                      CATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGAT         >  SRR4302534.2954023/1‑94 (MQ=60)

                                                                                      CATGCCT‑AAACTACATCATTCCCAGTCCGCAGTGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGAT         <  SRR4302534.1968364/94‑1 (MQ=60)

                                                                                       ATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGATA        <  SRR4302534.886319/94‑1 (MQ=60)

                                                                                       ATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGATA        >  SRR4302534.3520843/1‑94 (MQ=60)

                                                                                        TGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGGTGGTGCCATGGGTGGTGATAT       >  SRR4302534.3688713/1‑94 (MQ=60)

                                                                                        TGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGATAT       <  SRR4302534.4855479/94‑1 (MQ=60)

                                                                                        TGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGATAT       <  SRR4302534.2135320/94‑1 (MQ=60)

                                                                                         GCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGATATT      >  SRR4302534.3975009/1‑94 (MQ=60)

                                                                                         GCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGATATT      >  SRR4302534.1144881/1‑94 (MQ=60)

                                                                                          CCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGATATTG     >  SRR4302534.1922826/1‑94 (MQ=60)

                                                                                          CCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGATATTG     <  SRR4302534.1676709/94‑1 (MQ=60)

                                                                                            ctGAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGATATTGA    >  SRR4302534.3097852/3‑94 (MQ=60)

                                                                                            ctGAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGATATTGA    >  SRR4302534.5939843/3‑94 (MQ=60)

                                                                                              GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGATATTGATA  >  SRR4302534.3699063/1‑94 (MQ=60)

                                                                                              GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGATATTGATA  >  SRR4302534.6296520/1‑94 (MQ=60)

TTACCGGCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAATT‑G‑CTCATGCCTGGAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGGTGCCATGGTTTGTGATATTGATA  >  NC_000913/3979454‑3979639

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 9 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`