Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
744 |
338.8 |
17650688 |
97.8% |
17262372 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,057,759 |
+C |
coding (1773/1776 nt) |
yihK → |
putative GTP‑binding factor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,057,758 | 1 | . | C | 98.6%
| 976.4
/ 3.9
| 281 | coding (1772/1776 nt) | yihK | putative GTP‑binding factor |
| Reads supporting (aligned to +/- strand): ref base . (0/4); new base C (152/125); total (152/129) |
| Fisher's exact test for biased strand distribution p-value = 4.33e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 |
Only 100 of 303 total aligned reads displayed.
TATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCA‑C‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATG > NC_000913/4057666‑4057845
|
tATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCa > 1:471230/1‑93 (MQ=255)
aTCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCA‑c > 1:1984557/1‑93 (MQ=255)
tCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCA‑cc > 2:5940317/1‑92 (MQ=255)
ccGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGATCTCTATCCGTATTCGTAAACGTCA‑cct > 1:6832673/1‑91 (MQ=255)
ccGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCA‑cct > 1:100339/1‑91 (MQ=255)
tGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACgg < 1:3063232/93‑1 (MQ=255)
tGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACgg > 1:6434318/1‑93 (MQ=255)
tGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACgg > 2:8667198/1‑93 (MQ=255)
gACTCTGGAACAAGCTCTGGAGTTCATCGATGATGGCGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGa > 2:5608298/1‑93 (MQ=255)
gACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGa < 1:7289392/93‑1 (MQ=255)
ctctGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGaaa > 1:7804420/1‑93 (MQ=255)
tctGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGaaaa > 1:1920597/1‑93 (MQ=255)
tctGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGaaaa > 1:6669713/1‑93 (MQ=255)
ggAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGa > 2:2144960/1‑93 (MQ=255)
ggAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGa < 1:8365313/93‑1 (MQ=255)
gAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGAt < 1:1754273/93‑1 (MQ=255)
gAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGAt > 1:5589265/1‑93 (MQ=255)
aaCAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGAtc < 2:5820617/93‑1 (MQ=255)
aCAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGAtcg < 2:6986809/93‑1 (MQ=255)
ctctGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTcgcc < 1:6374171/93‑1 (MQ=255)
ctctGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTcgcc > 1:1316947/1‑93 (MQ=255)
tctGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTcgccg < 2:3568324/93‑1 (MQ=255)
tctGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTcgccg > 1:3971007/1‑93 (MQ=255)
ctGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTcgccgc > 2:8111032/1‑93 (MQ=255)
ctGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTcgccgc > 2:3962923/1‑93 (MQ=255)
gAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCCCCGCGcc > 2:6211691/1‑93 (MQ=255)
aGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCa > 2:909998/1‑93 (MQ=255)
ttCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAAc < 2:3703937/93‑1 (MQ=255)
ttCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAAc < 1:2335845/93‑1 (MQ=255)
ttCATCGATGAGGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAAc < 1:2443146/93‑1 (MQ=255)
cATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACcg > 2:4796932/1‑93 (MQ=255)
tCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACcgcg > 2:4905266/1‑93 (MQ=255)
gatgatGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACTTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCa > 2:7707348/1‑93 (MQ=255)
gatgatGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCa > 2:5325095/1‑93 (MQ=255)
atgatgACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCAc > 1:7634143/1‑93 (MQ=255)
atgaCGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGa > 1:5955225/1‑93 (MQ=255)
atgaCGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCACCGCGCCAACCGCGCACCGa > 2:6540493/1‑93 (MQ=255)
gaCGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGaaa < 1:8581896/93‑1 (MQ=255)
gAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGAc < 2:1864084/93‑1 (MQ=255)
gAACTGGTAGAAGTGACTCCGACATCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGAc < 2:4768325/93‑1 (MQ=255)
aCTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGa < 1:3888747/93‑1 (MQ=255)
aCTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGa < 2:8782478/93‑1 (MQ=255)
cTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGAt < 2:4205422/93‑1 (MQ=255)
ggTAGAAGTGAGTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTa > 2:5057371/1‑93 (MQ=255)
gTAGAAGGTCCTCCCACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTaa < 1:7848607/93‑1 (MQ=255)
tAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAAt > 2:6768152/1‑93 (MQ=255)
tAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAAt > 2:8221688/1‑93 (MQ=255)
tAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAAt < 2:1662843/93‑1 (MQ=255)
gAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAAttt > 1:1510570/1‑93 (MQ=255)
gAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAAttt > 2:4432016/1‑93 (MQ=255)
gAAGTGACCCCGGCCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAAttt < 2:8492777/93‑1 (MQ=255)
atgTGACTCCGACCTCTATCCGTTTTCGTAAACGTCACC‑TGACGGAATACGATCGTAGCCTCGCCAAGCGCGCACCGAAAGCCGGTTAAtttg > 2:6487353/3‑92 (MQ=255)
aGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATGTCg > 2:7855139/1‑93 (MQ=255)
gTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGt < 2:2921834/93‑1 (MQ=255)
gTGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAAAGATCGTCGCCGCGCCAACCACGCACCGAAAGACGCTTAATTTCGt > 2:8728646/1‑93 (MQ=255)
tGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGtt < 2:8457380/93‑1 (MQ=255)
tGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGtt < 2:2637534/93‑1 (MQ=255)
tGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGtt < 1:1117704/93‑1 (MQ=255)
tGACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGtt < 1:8667198/93‑1 (MQ=255)
ggACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGtt < 1:7059314/92‑1 (MQ=255)
gACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGttt < 1:6132625/93‑1 (MQ=255)
gACTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACAGCGCACCGAAAGACGATTAATTTCGttt > 1:3348233/1‑93 (MQ=255)
aCTCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGtttt > 2:4720920/1‑93 (MQ=255)
cTCCGCCCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGttttt < 1:8089778/93‑1 (MQ=255)
tCCGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGTAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGtttttt > 1:4373247/1‑93 (MQ=255)
ccGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTa > 2:7421226/1‑93 (MQ=255)
ccGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTa < 1:6049819/93‑1 (MQ=255)
cGACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAg < 2:1452784/93‑1 (MQ=255)
gACCTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGt > 1:5674571/1‑93 (MQ=255)
ccTCTATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCa > 1:3773611/1‑93 (MQ=255)
ctctATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCAt < 1:6902497/93‑1 (MQ=255)
tATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATaaa > 2:3778134/1‑93 (MQ=255)
tATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATaaa < 2:7309010/93‑1 (MQ=255)
tATCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATaaa > 2:121076/1‑93 (MQ=255)
aTCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATaaaa < 2:3165236/93‑1 (MQ=255)
tCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATaaaaa > 1:2158101/1‑93 (MQ=255)
tCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATaaaaa > 1:5533996/1‑93 (MQ=255)
tCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATaaaaa > 1:3200678/1‑93 (MQ=255)
tCCGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATaaaaa > 1:2553565/1‑93 (MQ=255)
tCCGTATTCGTAAACGTCA‑CATGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATaaaaa < 1:3561313/93‑1 (MQ=255)
cGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAAc > 2:1989600/1‑93 (MQ=255)
cGTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAAc < 1:7212344/93‑1 (MQ=255)
gTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTTATAAAAAAcc > 1:8199443/1‑93 (MQ=255)
gTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAAcc < 2:5704675/93‑1 (MQ=255)
gTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAAcc < 1:8814918/93‑1 (MQ=255)
gTATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAAcc < 1:8456801/93‑1 (MQ=255)
tATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACTATTAATTTCGTTTTTTAGTCATAAAAAACCt > 2:1787001/1‑93 (MQ=255)
tATTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCt > 2:667489/1‑93 (MQ=255)
aTTCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTg < 1:7172618/93‑1 (MQ=255)
ttCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGc < 2:2801003/93‑1 (MQ=255)
tCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGcc > 2:3357647/1‑93 (MQ=255)
tCGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGcc > 2:2818863/1‑93 (MQ=255)
tCGTAAACGTCACC‑TGACGAAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGcc < 2:806473/93‑1 (MQ=255)
cGTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCa > 2:1025446/1‑93 (MQ=255)
gTAAACGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAg < 2:825394/93‑1 (MQ=255)
aaaCGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCg < 1:4899952/93‑1 (MQ=255)
aaaCGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCg > 1:7366864/1‑93 (MQ=255)
aaCGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGa > 1:8733594/1‑93 (MQ=255)
aCGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGAt < 1:5150350/93‑1 (MQ=255)
cGTCACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATg < 1:547107/93‑1 (MQ=255)
|
TATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCA‑C‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATG > NC_000913/4057666‑4057845
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑C‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTT > NC_000913/4057666‑4057852
|
TATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑C > SRR4302541.2003743/1‑94 (MQ=60)
TATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑C < SRR4302541.1937850/94‑1 (MQ=60)
TCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGATCTCTATCCGTATTCGTAAACGT‑CA‑Cct > SRR4302541.6905782/1‑92 (MQ=60)
TCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑Cct > SRR4302541.101190/1‑92 (MQ=60)
CCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑Cctg > SRR4302541.5172042/1‑91 (MQ=60)
CGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGA > SRR4302541.8513177/1‑94 (MQ=60)
CGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑Cctgc > SRR4302541.8513176/1‑90 (MQ=60)
CATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACG < SRR4302541.3942946/94‑1 (MQ=60)
ATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGG < SRR4302541.8424507/94‑1 (MQ=60)
ATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGG > SRR4302541.6499897/1‑94 (MQ=60)
ATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑Cctgacga > SRR4302541.8691445/1‑87 (MQ=60)
TGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGA < SRR4302541.3094280/94‑1 (MQ=60)
TGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGA > SRR4302541.7041707/1‑94 (MQ=60)
GACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAA < SRR4302541.7367195/94‑1 (MQ=60)
ACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAA > SRR4302541.7888570/1‑94 (MQ=60)
CTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAA > SRR4302541.3217233/1‑94 (MQ=60)
CTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAA > SRR4302541.1939090/1‑94 (MQ=60)
CTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAA > SRR4302541.6738269/1‑94 (MQ=60)
TCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAAC < SRR4302541.6840008/94‑1 (MQ=60)
CTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACG < SRR4302541.1032895/94‑1 (MQ=60)
TGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGA < SRR4302541.8763084/94‑1 (MQ=60)
TGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGA > SRR4302541.6209833/1‑94 (MQ=60)
GGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGAT > SRR4302541.5646478/1‑94 (MQ=60)
GGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGAT < SRR4302541.8456017/94‑1 (MQ=60)
GAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATC < SRR4302541.1771371/94‑1 (MQ=60)
GAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATC < SRR4302541.3288108/94‑1 (MQ=60)
GAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATC > SRR4302541.3910615/1‑94 (MQ=60)
ACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGT > SRR4302541.4956088/1‑94 (MQ=60)
ACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGT < SRR4302541.1044501/94‑1 (MQ=60)
CAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTC > SRR4302541.6168911/1‑94 (MQ=60)
AAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCG < SRR4302541.7339678/94‑1 (MQ=60)
AGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGC < SRR4302541.3947663/94‑1 (MQ=60)
AGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGGGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGC > SRR4302541.2913274/1‑94 (MQ=60)
GCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCC > SRR4302541.1329902/1‑94 (MQ=60)
CTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCG < SRR4302541.6439305/94‑1 (MQ=60)
CTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCG > SRR4302541.4010429/1‑94 (MQ=60)
CTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TAACGTAAAACGATCGTCGCCG > SRR4302541.7865437/1‑94 (MQ=60)
GGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCC > SRR4302541.8225445/1‑94 (MQ=60)
GGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCC < SRR4302541.6974126/94‑1 (MQ=60)
AGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAA > SRR4302541.6972757/1‑94 (MQ=60)
AGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAA > SRR4302541.2555187/1‑94 (MQ=60)
TTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACC < SRR4302541.2853167/94‑1 (MQ=60)
TTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACC < SRR4302541.2358526/94‑1 (MQ=60)
TTCATCGATGAGGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACC < SRR4302541.2467381/94‑1 (MQ=60)
TCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCG < SRR4302541.3336326/94‑1 (MQ=60)
CATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGC > SRR4302541.5648498/1‑94 (MQ=60)
CATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGC > SRR4302541.5648503/1‑94 (MQ=60)
ATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCTCGCCAACTGCG > SRR4302541.8138083/1‑94 (MQ=60)
ATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCG > SRR4302541.5587386/1‑94 (MQ=60)
CGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCA < SRR4302541.7090364/94‑1 (MQ=60)
CGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCA > SRR4302541.6249258/1‑94 (MQ=60)
GATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCAC > SRR4302541.1274307/1‑94 (MQ=60)
GATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCAC > SRR4302541.6496490/1‑94 (MQ=60)
GATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCAC > SRR4302541.7715579/1‑94 (MQ=60)
GATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCAC > SRR4302541.1926698/1‑94 (MQ=60)
ATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACC > SRR4302541.2037855/1‑94 (MQ=60)
TGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑Ccgaccgaaaaagatccgccgccgccccaacgcgccccca > SRR4302541.6415538/1‑55 (MQ=60)
GATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGA > SRR4302541.6015921/1‑94 (MQ=60)
GATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGA > SRR4302541.6015920/1‑94 (MQ=60)
ATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAA > SRR4302541.680347/1‑94 (MQ=60)
ATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAA < SRR4302541.6635927/94‑1 (MQ=60)
TGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAA < SRR4302541.8803880/94‑1 (MQ=60)
GACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAG < SRR4302541.8674025/94‑1 (MQ=60)
GACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAG < SRR4302541.4766074/94‑1 (MQ=60)
GACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAG < SRR4302541.3147153/94‑1 (MQ=60)
GACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAG < SRR4302541.3902149/94‑1 (MQ=60)
GACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAG > SRR4302541.7430540/1‑94 (MQ=60)
GACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAG > SRR4302541.7163575/1‑94 (MQ=60)
GACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑AACC‑TGACGGCAAACGATCGTCGCCGCGCCAccgccgcaccaaaaa > SRR4302541.7430541/1‑79 (MQ=60)
ACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGA > SRR4302541.7916065/1‑94 (MQ=60)
ACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGA < SRR4302541.1982988/94‑1 (MQ=60)
CGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGAC < SRR4302541.251860/94‑1 (MQ=60)
GAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACG > SRR4302541.4417905/1‑94 (MQ=60)
AACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGA < SRR4302541.8894759/94‑1 (MQ=60)
ACTGGTAGAAGTGGCTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGAT < SRR4302541.7602355/94‑1 (MQ=60)
ACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGAT < SRR4302541.7602354/94‑1 (MQ=60)
ACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGAT < SRR4302541.3927743/94‑1 (MQ=60)
TGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTA < SRR4302541.1577194/94‑1 (MQ=60)
gtagaaggtcctcccACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAAT < SRR4302541.7934745/79‑1 (MQ=60)
GTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGCAAGACGATTAAT > SRR4302541.2091287/1‑94 (MQ=60)
GTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAAT < SRR4302541.7934744/94‑1 (MQ=60)
TAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATT < SRR4302541.154354/94‑1 (MQ=60)
TAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATT < SRR4302541.7045311/94‑1 (MQ=60)
AGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTCATTT > SRR4302541.1525593/1‑94 (MQ=60)
AGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTT > SRR4302541.993372/1‑94 (MQ=60)
AGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTT < SRR4302541.661598/94‑1 (MQ=60)
AGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTT > SRR4302541.3657001/1‑94 (MQ=60)
AGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTT > SRR4302541.1525594/1‑94 (MQ=60)
AGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTT < SRR4302541.3505202/94‑1 (MQ=60)
AAGTGACTCCGACCTCTATCCGTATTCGTAAGCGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCG < SRR4302541.1973391/94‑1 (MQ=60)
AGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGT < SRR4302541.4081759/94‑1 (MQ=60)
GTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTT < SRR4302541.8291496/94‑1 (MQ=60)
TGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTT < SRR4302541.1128212/94‑1 (MQ=60)
TGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTT > SRR4302541.2452431/1‑94 (MQ=60)
TGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTT < SRR4302541.2271925/94‑1 (MQ=60)
TGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTT < SRR4302541.8759965/94‑1 (MQ=60)
TGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACAGCGCACCGAAAGACGATTAATTTCGTTT > SRR4302541.3381692/1‑94 (MQ=60)
GGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTT < SRR4302541.7134390/94‑1 (MQ=60)
GACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTT > SRR4302541.8633484/1‑94 (MQ=60)
GACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTT > SRR4302541.5850706/1‑94 (MQ=60)
GACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTT < SRR4302541.6195242/94‑1 (MQ=60)
GACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTT > SRR4302541.3958622/1‑94 (MQ=60)
ACTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTT > SRR4302541.3658848/1‑94 (MQ=60)
CTCCGCCCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTT < SRR4302541.8178464/94‑1 (MQ=60)
CTCCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGTAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTT > SRR4302541.4416940/1‑94 (MQ=60)
CCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAG < SRR4302541.4362911/94‑1 (MQ=60)
CCGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAG < SRR4302541.6111681/94‑1 (MQ=60)
CCGACCTCTATCCGGATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAG < SRR4302541.6111682/94‑1 (MQ=60)
CGACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGT > SRR4302541.5732479/1‑94 (MQ=60)
GACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTC > SRR4302541.5539276/1‑94 (MQ=60)
ACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCA < SRR4302541.7274627/94‑1 (MQ=60)
ACCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCA > SRR4302541.3811517/1‑94 (MQ=60)
CCTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCAT < SRR4302541.7273119/94‑1 (MQ=60)
CTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATA < SRR4302541.6976146/94‑1 (MQ=60)
CTCTATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATA < SRR4302541.4600779/94‑1 (MQ=60)
CTCTATCCGTATTCGT‑AACGT‑CACC‑TGACGGAAAACGATCGTCGCCCCGCCAACCGCGCAACGAAAGACGATTAATTTCGTTTTTTAGTCATAA > SRR4302541.6483756/1‑94 (MQ=60)
ATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAA > SRR4302541.2178966/1‑94 (MQ=60)
ATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAA > SRR4302541.2579164/1‑94 (MQ=60)
ATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAA > SRR4302541.3233013/1‑94 (MQ=60)
ATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAA > SRR4302541.5590646/1‑94 (MQ=60)
ATCCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAA > SRR4302541.7935377/1‑94 (MQ=60)
TCCGTATTCGTAAACGT‑CA‑CATGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAA < SRR4302541.3597352/94‑1 (MQ=60)
CCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAAC > SRR4302541.8255709/1‑94 (MQ=60)
CCGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAAC > SRR4302541.5826301/1‑94 (MQ=60)
CGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTTATAAAAAACC > SRR4302541.8288926/1‑94 (MQ=60)
CGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACC > SRR4302541.3432386/1‑94 (MQ=60)
CGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACC < SRR4302541.7289286/94‑1 (MQ=60)
CGTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACC < SRR4302541.7305981/94‑1 (MQ=60)
GTATTCGTAAACGTCCC‑C‑TGACGGAAAACGATCGTGTGCGCGGCACCCGCGCAGCGAAAGACGATTAATTTCGTTTTTTAGTCCTAAAAAgccg > SRR4302541.8845915/1‑90 (MQ=39)
GTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCT > SRR4302541.1375863/1‑94 (MQ=60)
GTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCT < SRR4302541.8909031/94‑1 (MQ=60)
GTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCT < SRR4302541.8548053/94‑1 (MQ=60)
GTATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCT > SRR4302541.8845914/1‑94 (MQ=60)
TATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCTCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTG < SRR4302541.7462078/94‑1 (MQ=60)
ATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGC < SRR4302541.7249089/94‑1 (MQ=60)
ATTCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGC < SRR4302541.7249088/94‑1 (MQ=60)
TCGTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCA < SRR4302541.8600142/94‑1 (MQ=60)
GTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGC < SRR4302541.2381648/94‑1 (MQ=60)
GTAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGC > SRR4302541.5527076/1‑94 (MQ=60)
TAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCG > SRR4302541.5645369/1‑94 (MQ=60)
TAAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCG > SRR4302541.7445602/1‑94 (MQ=60)
AAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGA < SRR4302541.4949948/94‑1 (MQ=60)
AAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGA > SRR4302541.494600/1‑94 (MQ=60)
AAACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGA > SRR4302541.8827096/1‑94 (MQ=60)
ACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATG < SRR4302541.5203329/94‑1 (MQ=60)
ACGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATG < SRR4302541.8758776/94‑1 (MQ=60)
CGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGG > SRR4302541.8399716/1‑94 (MQ=60)
CGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGG > SRR4302541.4768169/1‑94 (MQ=60)
CGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGG < SRR4302541.552269/94‑1 (MQ=60)
CGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGG < SRR4302541.7796268/94‑1 (MQ=60)
CGT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGG < SRR4302541.1206716/94‑1 (MQ=60)
GT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGC < SRR4302541.5433300/94‑1 (MQ=60)
GT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGC > SRR4302541.7633474/1‑94 (MQ=60)
GT‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGC > SRR4302541.512224/1‑94 (MQ=60)
T‑CACC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCA < SRR4302541.4513463/94‑1 (MQ=60)
cacC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAG > SRR4302541.8155776/4‑94 (MQ=60)
cacC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAG > SRR4302541.2710119/4‑94 (MQ=60)
cacC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAG < SRR4302541.1161254/91‑1 (MQ=60)
acC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG < SRR4302541.5880942/92‑1 (MQ=60)
acC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG < SRR4302541.5880943/92‑1 (MQ=60)
acC‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG < SRR4302541.7207486/92‑1 (MQ=60)
C‑C‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGT > SRR4302541.8575533/1‑94 (MQ=60)
C‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTT > SRR4302541.7967865/1‑94 (MQ=60)
C‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTT > SRR4302541.4481830/1‑94 (MQ=60)
C‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTT > SRR4302541.7967867/1‑94 (MQ=60)
C‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTT > SRR4302541.6083427/1‑94 (MQ=60)
C‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTT > SRR4302541.7998740/1‑94 (MQ=60)
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TATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑C‑TGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTT > NC_000913/4057666‑4057852
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
