Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,057,759 |
+C |
coding (1773/1776 nt) |
yihK → |
putative GTP‑binding factor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,057,758 | 1 | . | C | 98.4%
| 850.1
/ 4.2
| 242 | coding (1772/1776 nt) | yihK | putative GTP‑binding factor |
| Reads supporting (aligned to +/- strand): ref base . (0/4); new base C (118/120); total (118/124) |
| Fisher's exact test for biased strand distribution p-value = 1.22e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 |
Only 100 of 264 total aligned reads displayed.
TATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑CTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATG > NC_000913/4057666‑4057845
|
tATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑Ca > 2:5835374/1‑93 (MQ=255)
tATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑Ca < 2:151678/93‑1 (MQ=255)
tATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑Ca > 1:3734828/1‑93 (MQ=255)
tATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑Ca < 2:3334518/93‑1 (MQ=255)
tCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑cc > 2:821170/1‑92 (MQ=255)
tCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑cc > 2:4967002/1‑92 (MQ=255)
tCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑cc < 2:2127197/93‑2 (MQ=255)
ccGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑cct < 1:5484738/93‑3 (MQ=255)
ccGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑cct > 2:4774214/1‑91 (MQ=255)
aTGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACg < 1:230330/93‑1 (MQ=255)
tGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACgg > 2:3007347/1‑93 (MQ=255)
gACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGa > 2:6096660/1‑93 (MQ=255)
gACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGa < 2:4737480/93‑1 (MQ=255)
gACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGa > 2:1622991/1‑93 (MQ=255)
aCTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGaa < 1:5109790/93‑1 (MQ=255)
ggAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACgt > 2:4129516/1‑92 (MQ=255)
ggAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGa < 1:2544982/93‑1 (MQ=255)
aCAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGAtcg < 1:40197/93‑1 (MQ=255)
cAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGAtcgt > 1:5338851/1‑93 (MQ=255)
cAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGAtcgt < 1:178842/93‑1 (MQ=255)
aaGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGAtcgtc < 2:2659828/93‑1 (MQ=255)
aaGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGAtcgtc < 2:2362171/93‑1 (MQ=255)
aGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGAtcgtcg > 2:6431376/1‑93 (MQ=255)
gCTCTGGAGTTCATCGTAGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCTTAAACGT‑CACCTGACGGAAAACGATCGTcgc < 2:2699071/93‑1 (MQ=255)
gCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTcgc < 2:3669194/93‑1 (MQ=255)
ctctGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTcgcc < 2:1792790/93‑1 (MQ=255)
tctGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTcgccg > 1:4646450/1‑93 (MQ=255)
ggAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCgcgc > 2:2335915/1‑93 (MQ=255)
gTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCaa > 2:3052341/1‑93 (MQ=255)
ttCATCGATGATGACGAACTGGTAGTAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAAc > 1:539204/1‑93 (MQ=255)
tCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAAcc < 2:202120/93‑1 (MQ=255)
cATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACcg > 1:4923478/1‑93 (MQ=255)
cATCAATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCCC‑CTGACGGAAAACGATCGTCGCCGCGCCAACcg < 2:1418972/93‑1 (MQ=255)
aTCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACcgc > 2:193183/1‑93 (MQ=255)
tgatgaCGAACTGTTAGAAGTGACTCCGCCCTCTATCCGTATTCGTAAACGTCCC‑CTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCAcc < 1:4862936/93‑1 (MQ=255)
tgatgaCGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCAcc > 2:4107769/1‑93 (MQ=255)
gatgaCGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCg > 1:1434524/1‑93 (MQ=255)
gaCGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGaaa < 2:3618116/93‑1 (MQ=255)
aCGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAg < 1:1642941/93‑1 (MQ=255)
aCGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAg > 1:6380308/1‑93 (MQ=255)
gAACTGTTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGAc < 1:5549600/93‑1 (MQ=255)
gAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGAc < 2:6336046/93‑1 (MQ=255)
aaCTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACg > 1:1992927/1‑93 (MQ=255)
aaCTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACg < 2:3469323/93‑1 (MQ=255)
aaCTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACg > 2:2185147/1‑93 (MQ=255)
aaCTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACg > 1:847649/1‑93 (MQ=255)
aaCTGGTAGAAGTGACTCCGACCTCTAGCCGAATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACTGCTCACCGAAAGACg > 1:3786306/1‑93 (MQ=255)
aCTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGa > 2:1069392/1‑93 (MQ=255)
aCTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGa > 2:4194798/1‑93 (MQ=255)
cTGGTAGAAGTGCCTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGAt < 1:2862677/93‑1 (MQ=255)
tGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGAtt < 2:4380679/93‑1 (MQ=255)
tAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGGCAACCGCGCACCGAAAGACGCTCAAt > 1:4393877/1‑93 (MQ=255)
aGAAGTGACTCCGTCCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAAtt < 1:3251159/93‑1 (MQ=255)
gAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAAttt > 2:1002527/1‑93 (MQ=255)
gAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAAAGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAAttt < 2:3437542/93‑1 (MQ=255)
gAAGGGGCTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAAttt < 2:5065236/93‑1 (MQ=255)
aaGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTc > 1:1297654/1‑93 (MQ=255)
gTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGt < 2:2419605/93‑1 (MQ=255)
gTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGt < 2:5786776/93‑1 (MQ=255)
gACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGttt < 1:5771904/93‑1 (MQ=255)
aCTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGtttt > 1:3447642/1‑93 (MQ=255)
ccGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTa > 2:2265803/1‑93 (MQ=255)
ccGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTa < 1:3569320/93‑1 (MQ=255)
gACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGt > 1:709510/1‑93 (MQ=255)
gACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGt < 2:5490342/93‑1 (MQ=255)
aCCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTc > 1:1024767/1‑93 (MQ=255)
aCCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTc < 2:4256317/93‑1 (MQ=255)
ccTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCa < 1:1262911/93‑1 (MQ=255)
ctctATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCAt < 2:2783261/93‑1 (MQ=255)
ctctATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCAt > 1:4352379/1‑93 (MQ=255)
tctATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATa > 1:3149961/1‑93 (MQ=255)
tctATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAATCATa > 1:5425642/1‑93 (MQ=255)
ctATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATaa < 1:425845/93‑1 (MQ=255)
ctATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATaa < 1:1949395/93‑1 (MQ=255)
ctATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATaa < 1:6034635/93‑1 (MQ=255)
tATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATaaa > 1:3862651/1‑93 (MQ=255)
tATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATaaa > 1:5300984/1‑93 (MQ=255)
cGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAAc > 2:2987132/1‑93 (MQ=255)
cGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAAc > 1:6433984/1‑93 (MQ=255)
cGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAAc < 1:3184241/93‑1 (MQ=255)
cGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAAc < 2:3707055/93‑1 (MQ=255)
gTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAAcc > 1:4449828/1‑93 (MQ=255)
gTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAAcc > 2:3583741/1‑93 (MQ=255)
tATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCt < 2:4478293/93‑1 (MQ=255)
tATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCt < 2:3834092/93‑1 (MQ=255)
tATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCt < 2:5319713/93‑1 (MQ=255)
aTTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTg < 2:724956/93‑1 (MQ=255)
aTTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTg < 2:3932381/93‑1 (MQ=255)
tCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGcc < 2:1873414/93‑1 (MQ=255)
tCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGcc < 1:5959711/93‑1 (MQ=255)
cGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCa < 2:322803/93‑1 (MQ=255)
tAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGc < 1:3082623/93‑1 (MQ=255)
tAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGc < 2:6161116/93‑1 (MQ=255)
aaaCGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCg > 1:2253528/1‑93 (MQ=255)
aaaCGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCg > 2:3779742/1‑93 (MQ=255)
aaaCGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCg > 2:134089/1‑93 (MQ=255)
aaCGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGa > 1:1096578/1‑93 (MQ=255)
aaCGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGa < 1:5890258/93‑1 (MQ=255)
aCGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGAt > 1:1585015/1‑93 (MQ=255)
cGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATg > 1:3288532/1‑93 (MQ=255)
|
TATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑CTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATG > NC_000913/4057666‑4057845
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑CTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTT > NC_000913/4057666‑4057852
|
TATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑C > SRR4302534.3901161/1‑94 (MQ=60)
ATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑CC < SRR4302534.1703110/94‑1 (MQ=60)
TCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑Cct < SRR4302534.910198/94‑3 (MQ=60)
CCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑Cctg < SRR4302534.5632663/94‑4 (MQ=60)
CGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGA > SRR4302534.3696560/1‑94 (MQ=60)
CGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGA > SRR4302534.1393507/1‑94 (MQ=60)
CGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGA < SRR4302534.4842883/94‑1 (MQ=60)
CATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACG > SRR4302534.3798350/1‑94 (MQ=60)
CATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACG < SRR4302534.621116/94‑1 (MQ=60)
ATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGG < SRR4302534.236351/94‑1 (MQ=60)
ACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAA > SRR4302534.5521296/1‑94 (MQ=60)
ACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAA < SRR4302534.1386824/94‑1 (MQ=60)
ACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAA < SRR4302534.5247683/94‑1 (MQ=60)
ACTCTGGAACAAGCTCTCGAGTTCATCGATTATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTATACGT‑CACCTGACGGAAA > SRR4302534.5521295/1‑94 (MQ=60)
TCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAAC < SRR4302534.2319083/94‑1 (MQ=60)
CTGGAACAATCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACG < SRR4302534.1602844/94‑1 (MQ=60)
CTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACG < SRR4302534.3353218/94‑1 (MQ=60)
GGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGAT < SRR4302534.2612474/94‑1 (MQ=60)
GGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGAT > SRR4302534.492650/1‑94 (MQ=60)
ACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGT < SRR4302534.41272/94‑1 (MQ=60)
ACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGT > SRR4302534.5482791/1‑94 (MQ=60)
ACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGT < SRR4302534.3854191/94‑1 (MQ=60)
CAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGTAAACGATCGTC < SRR4302534.4035046/94‑1 (MQ=60)
CAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTC < SRR4302534.183552/94‑1 (MQ=60)
AAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCG < SRR4302534.50572/94‑1 (MQ=60)
GCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCC < SRR4302534.3195375/94‑1 (MQ=60)
GCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCC < SRR4302534.4427522/94‑1 (MQ=60)
CTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCG > SRR4302534.4772576/1‑94 (MQ=60)
GGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAGAACGATCGTCGCCGCGCC > SRR4302534.347362/1‑94 (MQ=60)
GGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCC > SRR4302534.2532873/1‑94 (MQ=60)
GGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCC > SRR4302534.6305022/1‑94 (MQ=60)
GGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCC < SRR4302534.4530737/94‑1 (MQ=60)
GTTCATCGATGATGACGAACTGGTAGTAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAAC > SRR4302534.552561/1‑94 (MQ=60)
GTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAAC < SRR4302534.5739084/94‑1 (MQ=60)
TTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACC < SRR4302534.6380835/94‑1 (MQ=60)
TTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACC > SRR4302534.1126048/1‑94 (MQ=60)
TCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCG > SRR4302534.5056909/1‑94 (MQ=60)
TCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCC > SRR4302534.2035326/1‑94 (MQ=60)
CATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGC > SRR4302534.857841/1‑94 (MQ=60)
TCGATGATGACGAACTGGTAGAAGTGGCTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGC < SRR4302534.3297906/94‑1 (MQ=60)
TCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGC > SRR4302534.2136699/1‑94 (MQ=60)
CGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCA > SRR4302534.4205941/1‑94 (MQ=60)
GATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCAC > SRR4302534.420757/1‑94 (MQ=60)
ATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACC > SRR4302534.6058062/1‑94 (MQ=60)
TGATGACGAACTGTTAGAAGTGACTCCGCCCTCTATCCGTATTCGTAAACGTCCC‑CTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCA < SRR4302534.4994859/94‑1 (MQ=60)
TGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCG > SRR4302534.1472269/1‑94 (MQ=60)
TGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCG < SRR4302534.818589/94‑1 (MQ=60)
GACGACCTGTTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAG < SRR4302534.2317210/94‑1 (MQ=60)
GACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGCAAACGATCGTCGCCGCGCCAACCGCGCTCCGAAAG > SRR4302534.1715843/1‑94 (MQ=60)
GACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAG > SRR4302534.6552650/1‑94 (MQ=60)
ACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGA < SRR4302534.1685778/94‑1 (MQ=60)
ACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGA > SRR4302534.5553429/1‑94 (MQ=60)
CGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGAC < SRR4302534.2120431/94‑1 (MQ=60)
GAACTGTTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACG < SRR4302534.5699394/94‑1 (MQ=60)
GAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACG > SRR4302534.869012/1‑94 (MQ=60)
GAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACG > SRR4302534.5105431/1‑94 (MQ=60)
GAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACG > SRR4302534.2045130/1‑94 (MQ=60)
GAACTGGTAGAAGTGACTCCGACCTCTAGCCGAATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACTGCTCACCGAAAGACG > SRR4302534.3887958/1‑94 (MQ=60)
AACTGGTAGAAGTGCCTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGA < SRR4302534.1666082/94‑1 (MQ=60)
AACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGA < SRR4302534.5049945/94‑1 (MQ=60)
ACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGAT < SRR4302534.6193038/94‑1 (MQ=60)
ACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGAT < SRR4302534.4715426/94‑1 (MQ=60)
CTGGTAGAAGTGCCTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATT < SRR4302534.2937862/94‑1 (MQ=60)
CTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATT < SRR4302534.3577349/94‑1 (MQ=60)
TGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTA < SRR4302534.6098054/94‑1 (MQ=60)
GGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAA > SRR4302534.5452882/1‑94 (MQ=60)
GTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGGCAACCGCGCACCGAAAGACGCTCAAT > SRR4302534.4512379/1‑94 (MQ=60)
GTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAAT < SRR4302534.1074411/94‑1 (MQ=60)
AGAAGTGACTCCGTCCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTT < SRR4302534.3337744/94‑1 (MQ=60)
GAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTC < SRR4302534.654268/94‑1 (MQ=60)
GAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTC > SRR4302534.1331862/1‑94 (MQ=60)
AGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGT < SRR4302534.1955678/94‑1 (MQ=60)
TGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTT > SRR4302534.3025278/1‑94 (MQ=60)
TGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTT < SRR4302534.1314166/94‑1 (MQ=60)
GACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTT > SRR4302534.3540309/1‑94 (MQ=60)
GACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTT < SRR4302534.5928486/94‑1 (MQ=60)
TCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTA > SRR4302534.5617199/1‑94 (MQ=60)
CCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAT > SRR4302534.1208557/1‑94 (MQ=60)
CCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAG > SRR4302534.5999483/1‑94 (MQ=60)
CCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAG < SRR4302534.19371/94‑1 (MQ=60)
CCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAG < SRR4302534.3665320/94‑1 (MQ=60)
CGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGT > SRR4302534.726932/1‑94 (MQ=60)
GACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTC > SRR4302534.1051160/1‑94 (MQ=60)
ACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCA > SRR4302534.4726016/1‑94 (MQ=60)
ACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCA > SRR4302534.5692323/1‑94 (MQ=60)
CCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCAT > SRR4302534.4509381/1‑94 (MQ=60)
CCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCAT > SRR4302534.4469873/1‑94 (MQ=60)
CCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCAT < SRR4302534.1296186/94‑1 (MQ=60)
CTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATA > SRR4302534.402656/1‑94 (MQ=60)
CTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATA > SRR4302534.3232855/1‑94 (MQ=60)
CTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAATCATA > SRR4302534.5571660/1‑94 (MQ=60)
CCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAA < SRR4302534.5395852/94‑1 (MQ=60)
CTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAA < SRR4302534.2000416/94‑1 (MQ=60)
CTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAA > SRR4302534.5444024/1‑94 (MQ=60)
CTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAA > SRR4302534.2627355/1‑94 (MQ=60)
CTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAA > SRR4302534.2801883/1‑94 (MQ=60)
CTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAA > SRR4302534.3242877/1‑94 (MQ=60)
CTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAA < SRR4302534.1508203/94‑1 (MQ=60)
CTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAA > SRR4302534.3966362/1‑94 (MQ=60)
CTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAA < SRR4302534.6198644/94‑1 (MQ=60)
CTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAA < SRR4302534.436716/94‑1 (MQ=60)
TATCCGTATTCGTAAACGT‑CACCTGACGGAAAACCATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTTGATTTTTAGTCATAAAA > SRR4302534.3521587/1‑94 (MQ=60)
ATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAA > SRR4302534.3887921/1‑94 (MQ=60)
TCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAA < SRR4302534.5371352/94‑1 (MQ=60)
CCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAAC > SRR4302534.6607419/1‑94 (MQ=60)
CGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACC < SRR4302534.3268430/94‑1 (MQ=60)
CGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACC > SRR4302534.4570093/1‑94 (MQ=60)
GTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCT < SRR4302534.656330/94‑1 (MQ=60)
GTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCT < SRR4302534.3366094/94‑1 (MQ=60)
GTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCT < SRR4302534.3468097/94‑1 (MQ=60)
TATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTG < SRR4302534.4505090/94‑1 (MQ=60)
TATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTG < SRR4302534.3258478/94‑1 (MQ=60)
ATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGC < SRR4302534.592068/94‑1 (MQ=60)
TTCGTAAACGT‑CACCTGCCGAAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCC < SRR4302534.5651797/94‑1 (MQ=60)
TCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCA < SRR4302534.6121523/94‑1 (MQ=60)
cgcaaagttcacCTGACGGAAAACGATCGTCGCCGCGCCAACCGCTCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAG < SRR4302534.918900/82‑1 (MQ=60)
GTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGC > SRR4302534.992/1‑94 (MQ=60)
TAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCG < SRR4302534.3163616/94‑1 (MQ=60)
TAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCG < SRR4302534.3163615/94‑1 (MQ=60)
TAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCG > SRR4302534.2313261/1‑94 (MQ=60)
AAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGA > SRR4302534.1125120/1‑94 (MQ=60)
AAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGA < SRR4302534.721902/94‑1 (MQ=60)
AACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGAT > SRR4302534.1626477/1‑94 (MQ=60)
AACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGAT < SRR4302534.6050194/94‑1 (MQ=60)
accgacacCTGACGGAAAACGATCGTCGCCGCGCCACCCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAACCCTGCCAGCGAT < SRR4302534.4602869/86‑1 (MQ=60)
ACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATG > SRR4302534.3376215/1‑94 (MQ=60)
CGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGTCAGCGATGG > SRR4302534.4057522/1‑94 (MQ=60)
CGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGG > SRR4302534.5238657/1‑94 (MQ=60)
CGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGG > SRR4302534.4057521/1‑94 (MQ=60)
GT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGC < SRR4302534.2766478/94‑1 (MQ=60)
GT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGC > SRR4302534.2550947/1‑94 (MQ=60)
GT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGC < SRR4302534.6574962/94‑1 (MQ=60)
cacCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAG < SRR4302534.2110158/91‑1 (MQ=60)
cacCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAG < SRR4302534.1047583/91‑1 (MQ=60)
cacCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAG > SRR4302534.1022253/4‑94 (MQ=60)
CC‑CTGACGGAAAACGATCGTCCCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAACCCTGCCAGCGATGGCAGG < SRR4302534.1557683/94‑1 (MQ=60)
acCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG < SRR4302534.4949843/92‑1 (MQ=60)
C‑CTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGT < SRR4302534.360311/94‑1 (MQ=60)
CTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTT < SRR4302534.2906556/94‑1 (MQ=60)
|
TATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑CTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTT > NC_000913/4057666‑4057852
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
