Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	744	338.8	17650688	97.8%	17262372	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,071,652	A→G	S114G (AGC→GGC)	yihV →	putative kinase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,071,652	0	A	G	100.0%	882.5 / NA	258	S114G (AGC→GGC)	yihV	putative kinase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (126/132); total (126/132)

Only 100 of 273 total aligned reads displayed.

CGTTACACCAAACGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCAGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATGTACGCTGGCACGAC  >  NC_000913/4071562‑4071741

cGTTACACCAAACGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGc                                                                                         >  2:3724700/1‑93 (MQ=255)

 gTTACGCGAAACGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGcc                                                                                        <  1:610285/93‑1 (MQ=255)

 gTTACACCAAACGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGcc                                                                                        >  1:6359134/1‑93 (MQ=255)

   tACACCAAACGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCg                                                                                      >  1:4858431/1‑93 (MQ=255)

   tACACCAAACGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCg                                                                                      >  2:6490307/1‑93 (MQ=255)

    acacCAAACGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACcccggcccgg                                                                                     <  1:1024913/93‑1 (MQ=255)

      acCAAACGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGAt                                                                                   >  2:4199418/1‑93 (MQ=255)

        cAAACGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATct                                                                                 >  2:4608652/1‑93 (MQ=255)

         aaaCGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATctg                                                                                <  2:7873109/93‑1 (MQ=255)

          aaCGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATctgc                                                                               <  1:7625332/93‑1 (MQ=255)

          aaCGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATctgc                                                                               >  2:8014604/1‑93 (MQ=255)

          aaCGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATctgc                                                                               <  2:7559162/93‑1 (MQ=255)

          aaCGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATctgc                                                                               >  1:3364230/1‑93 (MQ=255)

           aCGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATctgct                                                                              <  1:6578182/93‑1 (MQ=255)

           aCGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATctgct                                                                              <  2:7105874/93‑1 (MQ=255)

             ggTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCtgctgc                                                                            >  1:8770022/1‑93 (MQ=255)

               tataACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCt                                                                          <  1:7464806/93‑1 (MQ=255)

               tataACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCt                                                                          <  1:2254939/93‑1 (MQ=255)

               tataACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCt                                                                          <  2:5687336/93‑1 (MQ=255)

                ataACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTg                                                                         >  1:1632832/1‑93 (MQ=255)

                 taACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGa                                                                        <  2:7982852/93‑1 (MQ=255)

                  aaCCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGAc                                                                       <  1:2682581/93‑1 (MQ=255)

                     cAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCa                                                                    >  1:302204/1‑93 (MQ=255)

                       ggCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCagg                                                                  >  1:6764816/1‑92 (MQ=255)

                       ggCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCaga                                                                  <  1:1609690/93‑1 (MQ=255)

                       ggCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCaga                                                                  <  2:2176554/93‑1 (MQ=255)

                       ggCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCaga                                                                  >  2:1242208/1‑93 (MQ=255)

                       ggCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCaga                                                                  >  2:3900/1‑93 (MQ=255)

                       ggCGAAACCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCaga                                                                  <  2:6949945/93‑1 (MQ=255)

                          gAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTg                                                               <  2:6351461/93‑1 (MQ=255)

                          gAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTg                                                               <  2:7717592/93‑1 (MQ=255)

                           aaaTCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTgg                                                              >  1:7589220/1‑93 (MQ=255)

                            aaTCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGt                                                             <  1:5977515/93‑1 (MQ=255)

                            aaTCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGt                                                             <  1:3313211/93‑1 (MQ=255)

                             aTCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGtt                                                            <  1:1078318/93‑1 (MQ=255)

                             aTCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGtt                                                            >  2:8700656/1‑93 (MQ=255)

                             aTCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGtt                                                            >  1:6953136/1‑93 (MQ=255)

                              tCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTg                                                           >  1:5686586/1‑93 (MQ=255)

                              tCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTg                                                           >  2:3124987/1‑93 (MQ=255)

                              tCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTg                                                           <  2:2395075/93‑1 (MQ=255)

                              tCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTg                                                           >  2:5277211/1‑93 (MQ=255)

                                ttCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTgga                                                         >  1:8686422/1‑93 (MQ=255)

                                ttCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTgga                                                         <  2:2546417/93‑1 (MQ=255)

                                ttCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTgga                                                         <  2:1585796/93‑1 (MQ=255)

                                 tcccAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTggag                                                        >  2:71706/4‑93 (MQ=255)

                                 tCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGGTCTGCTGCCTGACGCCGAGGGGTTggag                                                        >  1:3079609/1‑93 (MQ=255)

                                 tCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTggag                                                        >  1:8523413/1‑93 (MQ=255)

                                 tCGCAAGCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTGCCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTggag                                                        <  1:1335740/93‑1 (MQ=255)

                                  cGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTggagg                                                       >  1:2879134/1‑93 (MQ=255)

                                  cGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGACCGGATCTGCTGCCTGACGCAGAGTGGTTggagg                                                       >  2:1468683/1‑93 (MQ=255)

                                   gCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTggagga                                                      >  2:8566887/1‑93 (MQ=255)

                                    cAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGaa                                                     >  1:5380747/1‑93 (MQ=255)

                                    cAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGCACGaa                                                     >  2:5865575/1‑93 (MQ=255)

                                     aaTCCGCCATCATGGTTGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGaaa                                                    >  1:4349727/1‑93 (MQ=255)

                                     aaTCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGaaa                                                    >  2:1864293/1‑93 (MQ=255)

                                     aaTCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGaaa                                                    >  1:5061831/1‑93 (MQ=255)

                                      aTCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAAt                                                   <  2:835112/93‑1 (MQ=255)

                                         cGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGa                                                <  2:6233129/93‑1 (MQ=255)

                                          gCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGAt                                               >  2:3489887/1‑93 (MQ=255)

                                           ccATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGAtt                                              >  2:1952519/1‑93 (MQ=255)

                                             atcatGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTtc                                            <  2:5507290/93‑1 (MQ=255)

                                             atcatGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTtc                                            >  2:4881149/1‑93 (MQ=255)

                                             atcatGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGGGGTTGGAGGAAATTGAtttt                                            >  2:5123705/1‑92 (MQ=255)

                                              tcatGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGCGGTCGGAGGAAATTGATTtct                                           >  1:4209317/1‑93 (MQ=255)

                                                atGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTtctct                                         <  2:4370794/93‑1 (MQ=255)

                                                  ggtggATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCa                                       >  2:2288159/1‑93 (MQ=255)

                                                  ggtggATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCa                                       >  2:7466748/1‑93 (MQ=255)

                                                      gATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTgg                                   <  1:782538/93‑1 (MQ=255)

                                                        tACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGa                                 <  1:8309434/93‑1 (MQ=255)

                                                          ccAAAGGCGAGCGGATAATCATTACCTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGAtg                               <  2:3266512/93‑1 (MQ=255)

                                                           cAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGAtgt                              >  1:3440765/1‑93 (MQ=255)

                                                            aaaGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGAtgtt                             <  2:338818/93‑1 (MQ=255)

                                                            aaaGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGAtgtt                             <  2:2892794/93‑1 (MQ=255)

                                                            aaaGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGAtgtt                             <  2:6076951/93‑1 (MQ=255)

                                                             aaGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGAtgttg                            >  1:3154905/1‑93 (MQ=255)

                                                              aGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGAtgttgt                           >  2:7021396/1‑93 (MQ=255)

                                                                 cGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCt                        >  1:7174251/1‑93 (MQ=255)

                                                                 cGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCt                        <  2:8199004/93‑1 (MQ=255)

                                                                 cGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCt                        <  1:980723/93‑1 (MQ=255)

                                                                 cGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCt                        <  2:418471/93‑1 (MQ=255)

                                                                     cGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCa                    <  1:1829909/93‑1 (MQ=255)

                                                                     cGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCa                    <  1:8747922/93‑1 (MQ=255)

                                                                       gATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGa                  <  1:4581283/93‑1 (MQ=255)

                                                                        aTAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGTAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGAt                 <  1:8070827/93‑1 (MQ=255)

                                                                        aTAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGAt                 >  1:3888532/1‑93 (MQ=255)

                                                                          aaTCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATGt               <  1:3707989/93‑1 (MQ=255)

                                                                           aTCATTAACTCCCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATGTa              <  1:839159/93‑1 (MQ=255)

                                                                            tCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATGTAc             >  2:3563820/1‑93 (MQ=255)

                                                                            tCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATGTAc             <  1:2586494/93‑1 (MQ=255)

                                                                            tCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATGTAc             <  1:7979849/93‑1 (MQ=255)

                                                                              aTTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGAGGGATGGTGTGCTGGCAGATGTACGc           >  2:2820490/1‑93 (MQ=255)

                                                                                tAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATGTACGCTg         <  2:7324020/93‑1 (MQ=255)

                                                                                  aCTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATGTACGCTGGc       >  2:5483403/1‑93 (MQ=255)

                                                                                   cTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATGTACGCTGGCa      >  2:2049446/1‑93 (MQ=255)

                                                                                    tACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATGTACGCTGGCac     <  2:3437312/93‑1 (MQ=255)

                                                                                     aCCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATGTACGCTGGCacg    >  2:6085871/1‑93 (MQ=255)

                                                                                      ccccGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATGTACGCTGGCacga   <  2:7669303/93‑1 (MQ=255)

                                                                                      ccccGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATGTACGCTGGCacga   <  2:6337791/93‑1 (MQ=255)

                                                                                      ccccGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATGTACGCTGGCacga   >  1:2500276/1‑93 (MQ=255)

                                                                                       cccggcccggATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATGTACGCTGGCacggc  <  1:5664406/93‑3 (MQ=255)

CGTTACACCAAACGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCAGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATGTACGCTGGCACGAC  >  NC_000913/4071562‑4071741

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ACCCGTTACACCAAACGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCAGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATGTACGCTGGCACGACGGCG  >  NC_000913/4071559‑4071745

acacagTACACCAAAGGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCG                                                                                               <  SRR4302541.7292022/88‑1 (MQ=60)

ACCCGTTACACCAAACGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCG                                                                                               >  SRR4302541.2940350/1‑94 (MQ=60)

  CCGTTACACCAAACGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGC                                                                                             >  SRR4302541.3190538/1‑94 (MQ=60)

  CCGTTACACCAAACAGTATACCCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGC                                                                                             <  SRR4302541.2314817/94‑1 (MQ=60)

   CGTTACCCCAACCGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCC                                                                                            <  SRR4302541.2799287/94‑1 (MQ=60)

   CGTTACACCAAACGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCC                                                                                            >  SRR4302541.2100126/1‑94 (MQ=60)

   CGTTACACCAAACGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCC                                                                                            <  SRR4302541.5405035/94‑1 (MQ=60)

   CGTTACACCAAACGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCC                                                                                            >  SRR4302541.6424154/1‑94 (MQ=60)

   CGTTACACCAAACGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCC                                                                                            >  SRR4302541.6424155/1‑94 (MQ=60)

   CGTTACACCAAACGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCC                                                                                            >  SRR4302541.1079308/1‑94 (MQ=60)

    GTTACGCGAAACGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCC                                                                                           <  SRR4302541.616021/94‑1 (MQ=60)

    GTTACACCAAACGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCC                                                                                           >  SRR4302541.2572815/1‑94 (MQ=60)

     TTACACCAAACGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCG                                                                                          >  SRR4302541.4907975/1‑94 (MQ=60)

       ACACCAAACGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGA                                                                                        <  SRR4302541.1034382/94‑1 (MQ=60)

        CACCAAACGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGAT                                                                                       <  SRR4302541.6072242/94‑1 (MQ=60)

         ACCAAACGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATC                                                                                      <  SRR4302541.6945945/94‑1 (MQ=60)

         ACCAAACGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATC                                                                                      >  SRR4302541.870019/1‑94 (MQ=60)

         ACCAAACGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGAGATCGGATAATCATTAACTACCCCGGCCCGGCTC                                                                                      >  SRR4302541.7406941/1‑94 (MQ=60)

           CAAACGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTG                                                                                    <  SRR4302541.7675564/94‑1 (MQ=60)

            AAACGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGC                                                                                   >  SRR4302541.3397796/1‑94 (MQ=60)

             AACGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCT                                                                                  <  SRR4302541.7706725/94‑1 (MQ=60)

             AACGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCT                                                                                  <  SRR4302541.6154248/94‑1 (MQ=60)

             AACGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCT                                                                                  >  SRR4302541.7717930/1‑94 (MQ=60)

             AACGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCT                                                                                  <  SRR4302541.443539/94‑1 (MQ=60)

              ACGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTG                                                                                 <  SRR4302541.6645501/94‑1 (MQ=60)

               CGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGC                                                                                >  SRR4302541.8863783/1‑94 (MQ=60)

                  TATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTG                                                                             <  SRR4302541.2276714/94‑1 (MQ=60)

                  TATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTG                                                                             <  SRR4302541.7544587/94‑1 (MQ=60)

                  TATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTG                                                                             >  SRR4302541.1648992/1‑94 (MQ=60)

                  TATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTG                                                                             <  SRR4302541.3142181/94‑1 (MQ=60)

                  TATAACCAGGCCAAATGTTCCAAATCCGCCATCATCGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTG                                                                             <  SRR4302541.6158588/94‑1 (MQ=60)

                     atcgAGGCGACATCTTCGTACTCCGCCATCATGGTGGATACCAAAGGCGAGCTGATAATCATTAACTACCCAGGCCCGGATCTGCTGCCTGACG                                                                          <  SRR4302541.5311185/90‑1 (MQ=60)

                     AACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACG                                                                          <  SRR4302541.2709224/94‑1 (MQ=60)

                      ACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGC                                                                         >  SRR4302541.1744356/1‑94 (MQ=60)

                       cccgaaGAAATCTTCGCAATCCGCCATCATGGTTGATACCAGAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCA                                                                        <  SRR4302541.854472/88‑1 (MQ=60)

                       CCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCG                                                                        >  SRR4302541.336363/1‑94 (MQ=60)

                       CCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCA                                                                        >  SRR4302541.304856/1‑94 (MQ=60)

                        CAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAG                                                                       >  SRR4302541.1635404/1‑94 (MQ=60)

                         AGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGG                                                                      >  SRR4302541.6837155/1‑94 (MQ=60)

                         AGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGA                                                                      <  SRR4302541.3054318/94‑1 (MQ=60)

                          GGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAG                                                                     <  SRR4302541.4256355/94‑1 (MQ=60)

                          GGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAG                                                                     <  SRR4302541.1625688/94‑1 (MQ=60)

                           GCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGT                                                                    <  SRR4302541.5904855/94‑1 (MQ=60)

                            CGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTG                                                                   <  SRR4302541.8547197/94‑1 (MQ=60)

                            CGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTG                                                                   >  SRR4302541.4252212/1‑94 (MQ=60)

                            CGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTG                                                                   <  SRR4302541.4994636/94‑1 (MQ=60)

                             GAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGG                                                                  >  SRR4302541.7670298/1‑94 (MQ=60)

                             GAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGG                                                                  <  SRR4302541.7057083/94‑1 (MQ=60)

                              AAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGT                                                                 <  SRR4302541.4800599/94‑1 (MQ=60)

                               AATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTT                                                                <  SRR4302541.6038599/94‑1 (MQ=60)

                               AATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTT                                                                >  SRR4302541.7027287/1‑94 (MQ=60)

                               AATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTT                                                                <  SRR4302541.3346473/94‑1 (MQ=60)

                               AATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTT                                                                >  SRR4302541.291547/1‑94 (MQ=60)

                                ATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTG                                                               <  SRR4302541.1088367/94‑1 (MQ=60)

                                ATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTG                                                               >  SRR4302541.5744604/1‑94 (MQ=60)

                                 TCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGG                                                              <  SRR4302541.343298/94‑1 (MQ=60)

                                 TCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGG                                                              <  SRR4302541.1272865/94‑1 (MQ=60)

                                 TCTTCACAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGG                                                              <  SRR4302541.8853401/94‑1 (MQ=60)

                                  CTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGG                                                             >  SRR4302541.3400223/1‑94 (MQ=60)

                                  CTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGA                                                             >  SRR4302541.7968864/1‑94 (MQ=60)

                                  CTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGA                                                             >  SRR4302541.8779385/1‑94 (MQ=60)

                                   TTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGGTCTGCTGCCTGACGCCGAGGGGTTGGAG                                                            >  SRR4302541.3110864/1‑94 (MQ=60)

                                   TTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAG                                                            >  SRR4302541.811347/1‑94 (MQ=60)

                                   TTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAG                                                            >  SRR4302541.8615132/1‑94 (MQ=60)

                                   TTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAG                                                            <  SRR4302541.3791981/94‑1 (MQ=60)

                                   TTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAG                                                            <  SRR4302541.555074/94‑1 (MQ=60)

                                    TCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGG                                                           >  SRR4302541.2908026/1‑94 (MQ=60)

                                    TCGCAAGCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTGCCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGG                                                           <  SRR4302541.1348887/94‑1 (MQ=60)

                                     CGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGA                                                          >  SRR4302541.6465787/1‑94 (MQ=60)

                                      GCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAA                                                         >  SRR4302541.8779895/1‑94 (MQ=60)

                                      GCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAA                                                         >  SRR4302541.5435974/1‑94 (MQ=60)

                                       CAATCCGCCATCATGGTTGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAA                                                        >  SRR4302541.4393157/1‑94 (MQ=60)

                                       CAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAT                                                        >  SRR4302541.2673543/1‑94 (MQ=60)

                                       CAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAA                                                        >  SRR4302541.5113885/1‑94 (MQ=60)

                                        AATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAAT                                                       >  SRR4302541.2767625/1‑94 (MQ=60)

                                        AATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAAT                                                       >  SRR4302541.3123691/1‑94 (MQ=60)

                                          TCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTG                                                     <  SRR4302541.2293804/94‑1 (MQ=60)

                                           CCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGA                                                    >  SRR4302541.975953/1‑94 (MQ=60)

                                             GCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATT                                                  <  SRR4302541.7643430/94‑1 (MQ=60)

                                                ATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCT                                               >  SRR4302541.7552703/1‑94 (MQ=60)

                                                ATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGCGGTCGGAGGAAATTGATTTCT                                               >  SRR4302541.4251178/1‑94 (MQ=60)

                                                 TCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTC                                              >  SRR4302541.143745/1‑94 (MQ=60)

                                                 TCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTC                                              <  SRR4302541.7183672/94‑1 (MQ=60)

                                                     GGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAG                                          <  SRR4302541.7720431/94‑1 (MQ=60)

                                                       TGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTG                                        <  SRR4302541.2626958/94‑1 (MQ=60)

                                                       TAGATACCAAAGGCGAGCGGATAATCATTAACTGCCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTG                                        <  SRR4302541.7689478/94‑1 (MQ=60)

                                                        GGATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGG                                       <  SRR4302541.3764011/94‑1 (MQ=60)

                                                         GATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGG                                      <  SRR4302541.789815/94‑1 (MQ=60)

                                                          ATACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGAGGTTGGAGGAAATTGATTTCTCTCAGTGGGA                                     >  SRR4302541.6912072/1‑94 (MQ=60)

                                                           TACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGAT                                    <  SRR4302541.8399758/94‑1 (MQ=60)

                                                            ACCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATG                                   >  SRR4302541.8370419/1‑94 (MQ=60)

                                                             CCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGT                                  >  SRR4302541.4540123/1‑94 (MQ=60)

                                                             CCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGT                                  >  SRR4302541.8493935/1‑94 (MQ=60)

                                                             CCAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGT                                  >  SRR4302541.3475149/1‑94 (MQ=60)

                                                              CAAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTT                                 >  SRR4302541.6747718/1‑94 (MQ=60)

                                                               AAAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTG                                >  SRR4302541.3186758/1‑94 (MQ=60)

                                                                AAGGCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGT                               >  SRR4302541.8687160/1‑94 (MQ=60)

                                                                   GCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCT                            >  SRR4302541.8208112/1‑94 (MQ=60)

                                                                   GCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCT                            >  SRR4302541.7250753/1‑94 (MQ=60)

                                                                   GCGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCT                            <  SRR4302541.2951291/94‑1 (MQ=60)

                                                                    CGAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTG                           <  SRR4302541.989899/94‑1 (MQ=60)

                                                                     GAGCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGG                          >  SRR4302541.4005482/1‑94 (MQ=60)

                                                                       GCGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCA                        <  SRR4302541.673699/94‑1 (MQ=60)

                                                                        CGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAG                       <  SRR4302541.4746884/94‑1 (MQ=60)

                                                                        CGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAG                       <  SRR4302541.1847655/94‑1 (MQ=60)

                                                                        CGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAG                       >  SRR4302541.363221/1‑94 (MQ=60)

                                                                        CGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAG                       <  SRR4302541.8841515/94‑1 (MQ=60)

                                                                        CGGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAG                       <  SRR4302541.8841514/94‑1 (MQ=60)

                                                                         GGATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGA                      >  SRR4302541.5734940/1‑94 (MQ=60)

                                                                          GATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGAT                     >  SRR4302541.3260653/1‑94 (MQ=60)

                                                                          GATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGAT                     <  SRR4302541.4627706/94‑1 (MQ=60)

                                                                          GATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGAT                     >  SRR4302541.3927528/1‑94 (MQ=60)

                                                                           ATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGTAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATG                    <  SRR4302541.8159430/94‑1 (MQ=60)

                                                                           ATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATG                    <  SRR4302541.1989267/94‑1 (MQ=60)

                                                                           ATAATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATG                    >  SRR4302541.1740584/1‑94 (MQ=60)

                                                                             AATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATGTA                  <  SRR4302541.3745417/94‑1 (MQ=60)

                                                                              ATCATTAACTGCCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATGTAC                 <  SRR4302541.1120035/94‑1 (MQ=60)

                                                                              ATCATTAACTCCCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATGTAC                 <  SRR4302541.846768/94‑1 (MQ=60)

                                                                              ATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATGTAC                 <  SRR4302541.846767/94‑1 (MQ=60)

                                                                              ATCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGAGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGAGGTAC                 >  SRR4302541.1621821/1‑94 (MQ=60)

                                                                               TCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATGTACG                <  SRR4302541.2612413/94‑1 (MQ=60)

                                                                               TCATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATGTACG                <  SRR4302541.8067760/94‑1 (MQ=60)

                                                                                 ATTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATGTACGCT              <  SRR4302541.8071670/94‑1 (MQ=60)

                                                                                  TTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATGTACGCTG             <  SRR4302541.600124/94‑1 (MQ=60)

                                                                                  TTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATGTACGCTG             <  SRR4302541.2375127/94‑1 (MQ=60)

                                                                                  TTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATGTACGCTG             <  SRR4302541.6227941/94‑1 (MQ=60)

                                                                                  TTAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATGTACGCTG             <  SRR4302541.8872021/94‑1 (MQ=60)

                                                                                   TAACTACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATGTACGCTGG            >  SRR4302541.3490655/1‑94 (MQ=60)

                                                                                        ACCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATGTACGCTGGCACGA       >  SRR4302541.2525503/1‑94 (MQ=60)

                                                                                         CCCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATGTACGCTGGCACGAC      >  SRR4302541.5454928/1‑94 (MQ=60)

                                                                                          CCCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATGTACGCTGGCACGGCG     <  SRR4302541.5722246/94‑1 (MQ=60)

                                                                                           CCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATGTACGCTGGCACGACGG    >  SRR4302541.119429/1‑94 (MQ=60)

                                                                                           CCGGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATGTACGCTGGCACGACGG    >  SRR4302541.6933545/1‑94 (MQ=60)

                                                                                             GGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATGTACGCTGGCACGACGGCG  >  SRR4302541.2526892/1‑94 (MQ=60)

ACCCGTTACACCAAACGGTATAACCAGGCGAAATCTTCGCAATCCGCCATCATGGTGGATACCAAAGGCGAGCGGATAATCATTAACTACCCCAGCCCGGATCTGCTGCCTGACGCAGAGTGGTTGGAGGAAATTGATTTCTCTCAGTGGGATGTTGTGCTGGCAGATGTACGCTGGCACGACGGCG  >  NC_000913/4071559‑4071745

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`