Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	744	338.8	17650688	97.8%	17262372	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,171,680	A→G	V309A (GTA→GCA)	coaA ←	pantothenate kinase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,171,680	0	A	G	100.0%	1014.3 / NA	291	V309A (GTA→GCA)	coaA	pantothenate kinase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (141/150); total (141/150)

Only 100 of 294 total aligned reads displayed.

GGGCGGTGAAATATCCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTACCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTCAGCCAGTTGATCTCT  >  NC_000913/4171590‑4171769

gggCGGTGAAATATCCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGcc                                                                                         >  1:2414567/1‑93 (MQ=255)

  gCGGTGAAATATCCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGc                                                                                       >  1:6747015/1‑93 (MQ=255)

  gCGGTGAAATATCCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATCCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGc                                                                                       <  1:3697407/93‑1 (MQ=255)

      tGAAATATCCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGa                                                                                   <  1:5241149/93‑1 (MQ=255)

      tGAAATATCCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGa                                                                                   >  1:1203050/1‑93 (MQ=255)

        aaaTATCCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGAtt                                                                                 <  1:6070445/93‑1 (MQ=255)

        aaaTATCCCTGCGAAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGAtt                                                                                 <  2:5592839/93‑1 (MQ=255)

        aaaTATCACTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGAtt                                                                                 <  1:5823189/93‑1 (MQ=255)

          atatCCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAg                                                                               >  2:3818684/1‑93 (MQ=255)

           tatCCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGc                                                                              >  1:2228775/1‑93 (MQ=255)

            atCCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCa                                                                             <  1:2567831/93‑1 (MQ=255)

               ccTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACtt                                                                          <  2:6263599/93‑1 (MQ=255)

               ccTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACtt                                                                          <  1:6585078/93‑1 (MQ=255)

                cTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACttt                                                                         >  2:3532220/1‑93 (MQ=255)

                 tGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACtttt                                                                        >  1:1757706/1‑93 (MQ=255)

                 tGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACtttt                                                                        >  1:7527923/1‑93 (MQ=255)

                 tGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACtttt                                                                        >  2:6945159/1‑93 (MQ=255)

                  gCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTc                                                                       <  1:3411945/93‑1 (MQ=255)

                  gCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTc                                                                       <  2:4037592/93‑1 (MQ=255)

                    gTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGt                                                                     >  1:7776431/1‑93 (MQ=255)

                    gTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGt                                                                     >  2:8704713/1‑93 (MQ=255)

                     tAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTc                                                                    <  1:3560661/93‑1 (MQ=255)

                      aGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCa                                                                   >  1:5709272/1‑93 (MQ=255)

                      aGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCa                                                                   <  2:3574731/93‑1 (MQ=255)

                         gCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGa                                                                <  2:1735798/93‑1 (MQ=255)

                           aGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGAtt                                                              >  2:2076462/1‑93 (MQ=255)

                           aGAAAAATAAGAAAGGGGAGTATTCGCTCCCCGGCAAATTATTTGCGTAGTCTGACCTCTTCGGCTGCATGATTAGCACTTTTCGTCAGGAtt                                                              <  2:2367692/93‑1 (MQ=255)

                            gAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTa                                                             >  2:5389834/1‑93 (MQ=255)

                            gAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTa                                                             >  1:1700063/1‑93 (MQ=255)

                            gAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTa                                                             >  1:8247757/1‑93 (MQ=255)

                             aaaaaTAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTaa                                                            <  2:2806398/93‑1 (MQ=255)

                               aaaTAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAAc                                                          <  1:8114849/93‑1 (MQ=255)

                                  tAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTgg                                                       <  2:8532770/93‑1 (MQ=255)

                                   aaGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGgc                                                      <  2:6058099/93‑1 (MQ=255)

                                   aaGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGgc                                                      <  2:5135858/93‑1 (MQ=255)

                                      aaaGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGgcgcg                                                   <  2:7120567/93‑1 (MQ=255)

                                        aGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCt                                                 >  1:4271608/1‑93 (MQ=255)

                                        aGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCt                                                 >  1:2450629/1‑93 (MQ=255)

                                         ggggAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTc                                                >  1:7880179/1‑93 (MQ=255)

                                         ggggAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTc                                                <  1:7296357/93‑1 (MQ=255)

                                          gggAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCa                                               <  2:1469981/93‑1 (MQ=255)

                                          gggAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCa                                               <  1:597673/93‑1 (MQ=255)

                                           ggAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCAc                                              <  2:2958776/93‑1 (MQ=255)

                                             aGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGa                                            <  2:5039516/93‑1 (MQ=255)

                                              gTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAg                                           <  2:4253147/93‑1 (MQ=255)

                                               tATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAgt                                          <  1:8652229/93‑1 (MQ=255)

                                               tATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAgt                                          <  2:7497612/93‑1 (MQ=255)

                                               tATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACATCTTATGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAgt                                          >  1:8331083/1‑93 (MQ=255)

                                                aTTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAgta                                         <  2:3293139/93‑1 (MQ=255)

                                                aTTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGAGCGCTCACGAgta                                         >  2:7069305/1‑93 (MQ=255)

                                                 ttCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGCTTAACCTGGCGCGCTCACGAgtag                                        >  1:7201924/1‑93 (MQ=255)

                                                 ttCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAgtag                                        >  2:581900/1‑93 (MQ=255)

                                                 ttCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAgtag                                        >  2:4325538/1‑93 (MQ=255)

                                                 ttCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAgtag                                        >  1:2066836/1‑93 (MQ=255)

                                                    gCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAgtaggta                                     <  2:2996817/93‑1 (MQ=255)

                                                     cTCCCCTGCAAATTATTTGTGTAGTCTGACCTATTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAgtaggtag                                    >  2:2846534/1‑93 (MQ=255)

                                                     cTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAgtaggtag                                    >  2:6353172/1‑93 (MQ=255)

                                                     cTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAgtaggtag                                    >  1:1282051/1‑93 (MQ=255)

                                                      tCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGa                                   >  1:6241793/1‑93 (MQ=255)

                                                      tCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGa                                   <  1:8299490/93‑1 (MQ=255)

                                                       ccccTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGaa                                  >  1:7110436/1‑93 (MQ=255)

                                                       ccccTGCAAATTATTGGCGTAGTCTGCCCTCTTCTGCCGCATGATTAGCGCTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGaa                                  <  2:7764753/93‑1 (MQ=255)

                                                        cccTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAat                                 >  1:8788706/1‑93 (MQ=255)

                                                        cccTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAat                                 >  2:3925969/1‑93 (MQ=255)

                                                         ccTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAata                                >  1:7692051/1‑93 (MQ=255)

                                                         ccTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAata                                >  2:6150796/1‑93 (MQ=255)

                                                          cTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAatat                               >  2:123254/1‑93 (MQ=255)

                                                          cTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAatat                               <  2:4774693/93‑1 (MQ=255)

                                                          cTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAatat                               >  1:397355/1‑93 (MQ=255)

                                                          cTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAatat                               >  2:2333288/1‑93 (MQ=255)

                                                           tGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATAtt                              <  1:7075829/93‑1 (MQ=255)

                                                           tGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGGAGAATAtt                              >  1:1933883/1‑93 (MQ=255)

                                                            gCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATAttt                             >  2:5891652/1‑93 (MQ=255)

                                                             cAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATAtttt                            <  2:8451314/93‑1 (MQ=255)

                                                               aaTTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGc                          >  2:6784843/1‑93 (MQ=255)

                                                               aaTTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGc                          <  2:1611779/93‑1 (MQ=255)

                                                               aaTTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGc                          >  2:4901877/1‑93 (MQ=255)

                                                                attattTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCt                         >  2:819245/1‑93 (MQ=255)

                                                                attattTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCt                         >  2:831851/1‑93 (MQ=255)

                                                                  tattTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCttt                       <  1:97924/93‑1 (MQ=255)

                                                                   attTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTa                      <  1:3036358/93‑1 (MQ=255)

                                                                   attTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTa                      <  1:6875389/93‑1 (MQ=255)

                                                                    tttGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACGTTTCGTCACGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTaa                     <  1:845057/93‑1 (MQ=255)

                                                                     ttGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAg                    <  1:3921267/93‑1 (MQ=255)

                                                                     ttGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAg                    <  1:2913672/93‑1 (MQ=255)

                                                                       gCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGtt                  >  2:2113911/1‑93 (MQ=255)

                                                                        cGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTc                 >  1:6478359/1‑93 (MQ=255)

                                                                        cGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTc                 >  1:1400047/1‑93 (MQ=255)

                                                                        cGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTc                 >  2:6500600/1‑93 (MQ=255)

                                                                         gTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTCa                >  1:5552443/1‑93 (MQ=255)

                                                                             tCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTCAGCCa            >  2:6640309/1‑93 (MQ=255)

                                                                              cTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTCAGCCAg           <  2:4448418/93‑1 (MQ=255)

                                                                               tGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTCAGCCAGt          >  2:3151935/1‑93 (MQ=255)

                                                                                gACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTCAGCCAGtt         >  2:5125540/1‑93 (MQ=255)

                                                                                gACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTCAGCCAGtt         >  2:4598580/1‑93 (MQ=255)

                                                                                 aCCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTCAGCCAGTTg        <  2:5210636/93‑1 (MQ=255)

                                                                                    tcttctGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGACTATTTTGCTTTAAGTTCAGCCAGTTGAtc     >  2:7393803/1‑93 (MQ=255)

                                                                                    tcttctGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTCAGCCAGTTGAtc     <  2:824448/93‑1 (MQ=255)

                                                                                      ttctGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTCAGCCAGTTGAtctc   <  2:2247717/93‑1 (MQ=255)

                                                                                       tctGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTCAGCCAGTTGATctct  >  2:2492551/1‑93 (MQ=255)

GGGCGGTGAAATATCCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTACCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTCAGCCAGTTGATCTCT  >  NC_000913/4171590‑4171769

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GATGGGCGGTGAAATATCCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTACCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTCAGCCAGTTGATCTCTTTC  >  NC_000913/4171587‑4171772

GATGGGCGGTGAAATATCCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTG                                                                                              <  SRR4302541.4346132/94‑1 (MQ=60)

  TGGGCGGTGAAATATCCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCC                                                                                            <  SRR4302541.8874771/94‑1 (MQ=60)

  TGGGCGGTGAAATATCCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCC                                                                                            >  SRR4302541.2438332/1‑94 (MQ=60)

  TGGGCGGTGAAATATCCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCC                                                                                            >  SRR4302541.2438331/1‑94 (MQ=60)

   GGGCGGTGAAATATCCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCG                                                                                           >  SRR4302541.6259924/1‑94 (MQ=60)

    GGCGGTGAAATATCCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGC                                                                                          >  SRR4302541.6819134/1‑94 (MQ=60)

    GGCGGTGAAATATCCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGC                                                                                          >  SRR4302541.6819136/1‑94 (MQ=60)

     GCGGTGAAATATCCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCA                                                                                         <  SRR4302541.3734786/94‑1 (MQ=60)

     GCGGTGAAATATCCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATCCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCA                                                                                         <  SRR4302541.3734787/94‑1 (MQ=60)

       GGTGAAATATCCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTTACCTCTTCTGCCGCATG                                                                                       <  SRR4302541.6568540/94‑1 (MQ=60)

        GTGAAATATCCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGA                                                                                      >  SRR4302541.1214731/1‑94 (MQ=60)

         TGAAATATCCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGAT                                                                                     <  SRR4302541.5295153/94‑1 (MQ=60)

         TGAAATATCCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGAT                                                                                     <  SRR4302541.5581277/94‑1 (MQ=60)

         TGAAATATCCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGAT                                                                                     <  SRR4302541.3848468/94‑1 (MQ=60)

         TGAAATATCCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGAT                                                                                     <  SRR4302541.1299730/94‑1 (MQ=60)

         TGAAATATCCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGAT                                                                                     >  SRR4302541.7985575/1‑94 (MQ=60)

          GAAATATCCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATT                                                                                    <  SRR4302541.8552725/94‑1 (MQ=60)

          GAAATATCCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATT                                                                                    <  SRR4302541.3929936/94‑1 (MQ=60)

           AAATATCCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTA                                                                                   <  SRR4302541.6132429/94‑1 (MQ=60)

           AAATATCACTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTA                                                                                   <  SRR4302541.5882386/94‑1 (MQ=60)

             ATATCCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGC                                                                                 >  SRR4302541.7233313/1‑94 (MQ=60)

             ATATCCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGC                                                                                 >  SRR4302541.3161477/1‑94 (MQ=60)

             ATATCCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGC                                                                                 >  SRR4302541.2250363/1‑94 (MQ=60)

               ATCCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCAC                                                                               >  SRR4302541.3009926/1‑94 (MQ=60)

               ATCCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCAC                                                                               <  SRR4302541.2593571/94‑1 (MQ=60)

                 CCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTT                                                                             >  SRR4302541.6232705/1‑94 (MQ=60)

                  CGTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTT                                                                            <  SRR4302541.8440749/94‑1 (MQ=60)

                  CCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTT                                                                            <  SRR4302541.7291935/94‑1 (MQ=60)

                  CCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTT                                                                            <  SRR4302541.6652485/94‑1 (MQ=60)

                   CTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTT                                                                           >  SRR4302541.7608370/1‑94 (MQ=60)

                   CTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTT                                                                           >  SRR4302541.1774830/1‑94 (MQ=60)

                    TGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTC                                                                          >  SRR4302541.5808088/1‑94 (MQ=60)

                     GCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCG                                                                         <  SRR4302541.3446006/94‑1 (MQ=60)

                      CGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGT                                                                        >  SRR4302541.7859153/1‑94 (MQ=60)

                      CGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGT                                                                        >  SRR4302541.6608215/1‑94 (MQ=60)

                      CGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGT                                                                        >  SRR4302541.7859158/1‑94 (MQ=60)

                       GTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTC                                                                       <  SRR4302541.7283115/94‑1 (MQ=60)

                        TAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCA                                                                      <  SRR4302541.6882595/94‑1 (MQ=60)

                        TAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCA                                                                      >  SRR4302541.5767490/1‑94 (MQ=60)

                        TAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCA                                                                      <  SRR4302541.3596691/94‑1 (MQ=60)

                         AGTGCAGAAAAATAAGAGAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAG                                                                     <  SRR4302541.7922821/94‑1 (MQ=60)

                         AGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAG                                                                     <  SRR4302541.5809381/94‑1 (MQ=60)

                         AGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAG                                                                     >  SRR4302541.7746359/1‑94 (MQ=60)

                         AGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAG                                                                     <  SRR4302541.7971245/94‑1 (MQ=60)

                          GTGCAGAAAAATAAGAAAGGGGAGTATTCGCTACCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGG                                                                    >  SRR4302541.908613/1‑94 (MQ=60)

                           TGCAGAAAAATAAGAAAGGGGAGTATTCTCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGA                                                                   >  SRR4302541.4300271/1‑94 (MQ=60)

                            GCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGAT                                                                  <  SRR4302541.1005451/94‑1 (MQ=60)

                             CAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATT                                                                 >  SRR4302541.6963495/1‑94 (MQ=60)

                              AGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTA                                                                >  SRR4302541.8337601/1‑94 (MQ=60)

                              AGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTA                                                                >  SRR4302541.1716727/1‑94 (MQ=60)

                              AGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTA                                                                <  SRR4302541.7577044/94‑1 (MQ=60)

                               GAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAA                                                               >  SRR4302541.1848058/1‑94 (MQ=60)

                                AAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAA                                                              >  SRR4302541.8366690/1‑94 (MQ=60)

                                  AAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACT                                                            <  SRR4302541.6497337/94‑1 (MQ=60)

                                  AAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACT                                                            <  SRR4302541.8203753/94‑1 (MQ=60)

                                    ATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGG                                                          <  SRR4302541.7898788/94‑1 (MQ=60)

                                     TAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGC                                                         <  SRR4302541.5947902/94‑1 (MQ=60)

                                       AGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGC                                                       >  SRR4302541.5896135/1‑94 (MQ=60)

                                       AGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGC                                                       <  SRR4302541.3694722/94‑1 (MQ=60)

                                       AGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGC                                                       >  SRR4302541.6072035/1‑94 (MQ=60)

                                          AAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCT                                                    >  SRR4302541.4314284/1‑94 (MQ=60)

                                          AAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCT                                                    >  SRR4302541.2474991/1‑94 (MQ=60)

                                           AGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTC                                                   >  SRR4302541.7966797/1‑94 (MQ=60)

                                           AGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTC                                                   >  SRR4302541.1987721/1‑94 (MQ=60)

                                           AGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTC                                                   >  SRR4302541.2119153/1‑94 (MQ=60)

                                           AGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTC                                                   >  SRR4302541.6705937/1‑94 (MQ=60)

                                            GGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCA                                                  <  SRR4302541.7374229/94‑1 (MQ=60)

                                             GGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCAC                                                 <  SRR4302541.603305/94‑1 (MQ=60)

                                              GGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACG                                                <  SRR4302541.1666332/94‑1 (MQ=60)

                                                AGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAG                                              <  SRR4302541.8384943/94‑1 (MQ=60)

                                                AGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAG                                              <  SRR4302541.277990/94‑1 (MQ=60)

                                                 GTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGT                                             <  SRR4302541.4840735/94‑1 (MQ=60)

                                                 GTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGT                                             >  SRR4302541.3188455/1‑94 (MQ=60)

                                                 GTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACATCTTATGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGT                                             >  SRR4302541.8421572/1‑94 (MQ=60)

                                                 GTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACATCTTATGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGA                                             >  SRR4302541.8421571/1‑94 (MQ=60)

                                                  TATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTA                                            <  SRR4302541.8744873/94‑1 (MQ=60)

                                                   ATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGCTTAACCTGGCGCGCTCACGAGTAG                                           >  SRR4302541.7278762/1‑94 (MQ=60)

                                                   ATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAG                                           >  SRR4302541.2086800/1‑94 (MQ=60)

                                                   ATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAG                                           <  SRR4302541.7794709/94‑1 (MQ=60)

                                                   ATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAG                                           <  SRR4302541.6045626/94‑1 (MQ=60)

                                                   ATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAG                                           <  SRR4302541.5480122/94‑1 (MQ=60)

                                                   ATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAG                                           <  SRR4302541.8821349/94‑1 (MQ=60)

                                                   ATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAG                                           <  SRR4302541.7196833/94‑1 (MQ=60)

                                                   ATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAG                                           <  SRR4302541.2494752/94‑1 (MQ=60)

                                                    TTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGG                                          <  SRR4302541.3453891/94‑1 (MQ=60)

                                                       GCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAG                                       <  SRR4302541.8214170/94‑1 (MQ=60)

                                                       GCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAG                                       >  SRR4302541.1294768/1‑94 (MQ=60)

                                                       GCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAG                                       >  SRR4302541.1723582/1‑94 (MQ=60)

                                                       GCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAG                                       >  SRR4302541.7158489/1‑94 (MQ=60)

                                                       GCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAG                                       <  SRR4302541.3520758/94‑1 (MQ=60)

                                                        CTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGA                                      >  SRR4302541.6724894/1‑94 (MQ=60)

                                                        CTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGA                                      >  SRR4302541.6305562/1‑94 (MQ=60)

                                                         TCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAA                                     >  SRR4302541.2133898/1‑94 (MQ=60)

                                                         TCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAA                                     <  SRR4302541.8389735/94‑1 (MQ=60)

                                                         TCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAA                                     >  SRR4302541.7186166/1‑94 (MQ=60)

                                                          CCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAAT                                    >  SRR4302541.8882591/1‑94 (MQ=60)

                                                          CCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAAT                                    <  SRR4302541.1291102/94‑1 (MQ=60)

                                                          CCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAAT                                    >  SRR4302541.2554952/1‑94 (MQ=60)

                                                           CCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATA                                   >  SRR4302541.7773846/1‑94 (MQ=60)

                                                            CCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATAT                                  >  SRR4302541.401032/1‑94 (MQ=60)

                                                            CCTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATAT                                  >  SRR4302541.1375996/1‑94 (MQ=60)

                                                             CTGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGGAGAATATT                                 >  SRR4302541.1952507/1‑94 (MQ=60)

                                                              TGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTT                                <  SRR4302541.8410407/94‑1 (MQ=60)

                                                              TGCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTT                                <  SRR4302541.7151083/94‑1 (MQ=60)

                                                               GCAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTT                               <  SRR4302541.7116728/94‑1 (MQ=60)

                                                                CAAATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTG                              <  SRR4302541.8231753/94‑1 (MQ=60)

                                                                  AATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCT                            <  SRR4302541.98113/94‑1 (MQ=60)

                                                                  AATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCT                            >  SRR4302541.6495202/1‑94 (MQ=60)

                                                                  AATTATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCT                            <  SRR4302541.8591551/94‑1 (MQ=60)

                                                                     TATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTA                         >  SRR4302541.199425/1‑94 (MQ=60)

                                                                     TATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTA                         <  SRR4302541.98765/94‑1 (MQ=60)

                                                                     TATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTA                         <  SRR4302541.2472786/94‑1 (MQ=60)

                                                                      ATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAA                        <  SRR4302541.3067026/94‑1 (MQ=60)

                                                                      ATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAA                        >  SRR4302541.2867014/1‑94 (MQ=60)

                                                                      ATTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAA                        <  SRR4302541.6948811/94‑1 (MQ=60)

                                                                       TTTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACGTTTCGTCACGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAG                       <  SRR4302541.852732/94‑1 (MQ=60)

                                                                        TTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGT                      <  SRR4302541.2942973/94‑1 (MQ=60)

                                                                        TTGCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGT                      <  SRR4302541.3960378/94‑1 (MQ=60)

                                                                          GCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTC                    >  SRR4302541.6544379/1‑94 (MQ=60)

                                                                          GCGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTC                    >  SRR4302541.1413740/1‑94 (MQ=60)

                                                                           CGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTCA                   >  SRR4302541.4287619/1‑94 (MQ=60)

                                                                           CGTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTCA                   >  SRR4302541.5609282/1‑94 (MQ=60)

                                                                            GTAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTCAG                  <  SRR4302541.7748707/94‑1 (MQ=60)

                                                                             TAGTCTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTCAGC                 <  SRR4302541.225527/94‑1 (MQ=60)

                                                                                 CTGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTCAGCCAGT             >  SRR4302541.8756788/1‑94 (MQ=60)

                                                                                  TGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTCAGCCAGTT            >  SRR4302541.1916798/1‑94 (MQ=60)

                                                                                  TGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTCAGCCAGTT            >  SRR4302541.7168627/1‑94 (MQ=60)

                                                                                  TGACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTCAGCCAGTT            >  SRR4302541.1572344/1‑94 (MQ=60)

                                                                                    ACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTCAGCCAGTTGA          <  SRR4302541.5723876/94‑1 (MQ=60)

                                                                                    ACCTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTCAGCCAGTTGA          >  SRR4302541.5761937/1‑94 (MQ=60)

                                                                                      CTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTCAGCCAGTTGATC        >  SRR4302541.8464811/1‑94 (MQ=60)

                                                                                      CTCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTCAGCCAGTTGATC        <  SRR4302541.3986948/94‑1 (MQ=60)

                                                                                       TCTTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTCAGCCAGTTGATCT       <  SRR4302541.3054538/94‑1 (MQ=60)

                                                                                         TTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTCAGCCAGTTGATCTCT     <  SRR4302541.4683339/94‑1 (MQ=60)

                                                                                         TTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTCAGCCAGTTGATCTCT     <  SRR4302541.1729709/94‑1 (MQ=60)

                                                                                         TTCTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTCAGCCAGTTGATCTCT     <  SRR4302541.2469690/94‑1 (MQ=60)

                                                                                           CTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTCAGCCAGTTGATCTCTTT   <  SRR4302541.4698694/94‑1 (MQ=60)

                                                                                           CTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTCAGCCAGTTGATCTCTTT   >  SRR4302541.7526113/1‑94 (MQ=60)

                                                                                           CTGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTCAGCCAGTTGATCTCTTT   >  SRR4302541.6960576/1‑94 (MQ=60)

                                                                                            TGCCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTCAGCCAGTTGATCTCTTTC  <  SRR4302541.38408/94‑1 (MQ=60)

GATGGGCGGTGAAATATCCCTGCGTAGTGCAGAAAAATAAGAAAGGGGAGTATTCGCTCCCCTGCAAATTATTTGCGTAGTCTGACCTCTTCTACCGCATGATTAGCACTTTTCGTCAGGATTAAACTGGCGCGCTCACGAGTAGGTAGAATATTTTGCTTTAAGTTCAGCCAGTTGATCTCTTTC  >  NC_000913/4171587‑4171772

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`