Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 744 338.8 17650688 97.8% 17262372 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,542,643 Δ1 bp intergenic (+46/‑22) b4316 → / → fimD Pil/FimD

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,542,6400G.100.0% 1455.2 / NA 311intergenic (+43/‑25)b4316/fimDPil/FimD
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base . (178/133);  total (178/133)

Only 100 of 347 total aligned reads displayed.

TAAATGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATC  >  NC_000913/4542548‑4542728
                                                                                            |                                                                                        
tAAATGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCg                                                                                          >  1:2883852/1‑93 (MQ=255)
tAAATGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCg                                                                                          >  2:7326300/1‑93 (MQ=255)
 aaaTGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCgg                                                                                         >  2:4299027/1‑93 (MQ=255)
 aaaTGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCgg                                                                                         >  2:3310342/1‑93 (MQ=255)
  aaTGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCggg                                                                                        <  2:227080/93‑1 (MQ=255)
  aaTGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCggg                                                                                        >  1:2340631/1‑93 (MQ=255)
   aTGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCgggt                                                                                       <  2:3713951/93‑2 (MQ=255)
   aTGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCgggg                                                                                       >  1:4231306/1‑93 (MQ=255)
     gATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCgggtga                                                                                     <  1:1188955/93‑4 (MQ=255)
      aTTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCgggtgat                                                                                    >  2:8527322/1‑89 (MQ=255)
      aTTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCgggtgat                                                                                    >  1:149006/1‑89 (MQ=255)
       ttATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGAtt                                                                                  >  1:3013747/1‑93 (MQ=255)
        tATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGAttt                                                                                 >  1:1112992/1‑93 (MQ=255)
         aTGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGAtttt                                                                                >  1:7564058/1‑93 (MQ=255)
          tGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTa                                                                               >  1:5198538/1‑93 (MQ=255)
          tGGCGCACTTACCCCCAAAATGACGGCCGGAATGGAATAACGCAGGGGGAATCTTTCGCCTGAATCAAAAGAATTGACTGCC‑GGGTGATTTTa                                                                               >  1:2148062/1‑93 (MQ=255)
           ggCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTaa                                                                              >  2:1483499/1‑93 (MQ=255)
              gcACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGcc                                                                           <  2:2913594/93‑1 (MQ=255)
              gcACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGcc                                                                           >  1:6482616/1‑93 (MQ=255)
                  ttACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCggag                                                                       >  1:8393200/1‑93 (MQ=255)
                  ttACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCggag                                                                       >  1:6132988/1‑93 (MQ=255)
                    aCCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCggagga                                                                     <  2:7970151/93‑1 (MQ=255)
                    aCCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCggagga                                                                     >  1:6034320/1‑93 (MQ=255)
                     cccccAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGaa                                                                    <  2:5025784/93‑1 (MQ=255)
                      ccccAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGaat                                                                   >  1:4324464/1‑93 (MQ=255)
                       cccAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGaata                                                                  >  1:4118569/1‑93 (MQ=255)
                        ccAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGaataa                                                                 >  2:3767187/1‑93 (MQ=255)
                        ccAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGaataa                                                                 <  1:6809751/93‑1 (MQ=255)
                        ccAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGaataa                                                                 >  1:2575108/1‑93 (MQ=255)
                         cAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGaataat                                                                >  1:5706221/1‑93 (MQ=255)
                         cAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGaataat                                                                <  1:701589/93‑1 (MQ=255)
                          aaaaTGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATg                                                               >  2:6361071/1‑93 (MQ=255)
                           aaaTGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGt                                                              <  1:8750476/93‑1 (MQ=255)
                            aaTGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTc                                                             >  2:3842654/1‑93 (MQ=255)
                             aTGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCa                                                            >  2:7771571/1‑93 (MQ=255)
                             aTGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCa                                                            <  2:6559923/93‑1 (MQ=255)
                               gACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCata                                                          >  2:1906644/1‑93 (MQ=255)
                                  gggCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCt                                                       >  2:1754876/1‑93 (MQ=255)
                                  gggCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCt                                                       <  2:1969945/93‑1 (MQ=255)
                                   ggCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTg                                                      >  1:4538679/1‑93 (MQ=255)
                                      gTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAAt                                                   >  2:5233270/1‑93 (MQ=255)
                                       tAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAAtt                                                  >  1:4765183/1‑93 (MQ=255)
                                       tAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAAtt                                                  <  2:4481088/93‑1 (MQ=255)
                                           ggAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAg                                              <  2:205193/93‑1 (MQ=255)
                                           ggAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAg                                              >  1:7357584/1‑93 (MQ=255)
                                            gAATAACGGAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGa                                             >  2:3391256/1‑93 (MQ=255)
                                              aTAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACt                                           >  2:2870364/1‑93 (MQ=255)
                                               tAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACtt                                          <  1:8291104/93‑1 (MQ=255)
                                               tAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACtt                                          >  1:6365194/1‑93 (MQ=255)
                                                 aCGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTa                                        <  1:7758763/93‑1 (MQ=255)
                                                  cGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTAc                                       <  1:2049191/93‑1 (MQ=255)
                                                   gCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTAcc                                      <  1:3617289/93‑1 (MQ=255)
                                                     aGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAg                                    <  2:7021109/93‑1 (MQ=255)
                                                     aGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAg                                    <  1:978670/93‑1 (MQ=255)
                                                     aGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAg                                    <  1:3874589/93‑1 (MQ=255)
                                                     aGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAg                                    <  1:1383925/93‑1 (MQ=255)
                                                     aGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAg                                    >  1:6632462/1‑93 (MQ=255)
                                                      gggggAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGc                                   >  2:7194634/1‑93 (MQ=255)
                                                       ggggAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCg                                  >  1:6292969/1‑93 (MQ=255)
                                                         ggAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGaa                                >  2:2367277/1‑93 (MQ=255)
                                                          gAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGaaa                               <  1:1724450/93‑1 (MQ=255)
                                                           aaTTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAac                              >  2:4085947/1‑93 (MQ=255)
                                                            aTTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAaca                             >  2:1244645/1‑93 (MQ=255)
                                                            aTTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAaca                             <  1:5815297/93‑1 (MQ=255)
                                                            aTTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAaca                             <  1:5486835/93‑1 (MQ=255)
                                                             tttttCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAacaa                            >  2:7529075/1‑92 (MQ=255)
                                                              ttttCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAacaca                           <  1:5234939/93‑1 (MQ=255)
                                                              ttttCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAacaca                           <  2:1583828/93‑1 (MQ=255)
                                                               tttCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAacacac                          >  1:6683298/1‑93 (MQ=255)
                                                                 tCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACaa                        <  1:3168871/93‑1 (MQ=255)
                                                                 tCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACaa                        >  2:5540225/1‑93 (MQ=255)
                                                                  cGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAAt                       <  2:4202558/93‑1 (MQ=255)
                                                                   gCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATg                      >  2:6620594/1‑93 (MQ=255)
                                                                     cTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCt                    <  1:3823328/93‑1 (MQ=255)
                                                                      tGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACTCACAATGCtt                   >  1:8125663/1‑93 (MQ=255)
                                                                      tGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCtt                   <  1:2834384/93‑1 (MQ=255)
                                                                      tGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCtt                   >  2:8183956/1‑93 (MQ=255)
                                                                      tGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCtt                   >  1:4845308/1‑93 (MQ=255)
                                                                       gAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTg                  >  1:4052015/1‑93 (MQ=255)
                                                                       gAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTg                  <  1:5523089/93‑1 (MQ=255)
                                                                         aTAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCa                <  1:185404/93‑1 (MQ=255)
                                                                          tAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCat               >  2:5836533/1‑93 (MQ=255)
                                                                           aaaaaGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTACGACTTTACCAGCGAAACACACAATGCTTGCata              >  1:8470745/1‑93 (MQ=255)
                                                                           aaaaaGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCata              >  2:595195/1‑93 (MQ=255)
                                                                           aaaaaGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCata              >  2:6834189/1‑93 (MQ=255)
                                                                            aaaaGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCatat             <  2:4802276/93‑1 (MQ=255)
                                                                             aaaGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATAtt            >  2:5500478/1‑93 (MQ=255)
                                                                             aaaGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATAtt            <  1:1779678/93‑1 (MQ=255)
                                                                             aaaGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATAtt            <  2:2568937/93‑1 (MQ=255)
                                                                               aGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCg          <  1:7728433/93‑1 (MQ=255)
                                                                                gAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGt         >  2:8611659/1‑93 (MQ=255)
                                                                                 aaTTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTa        >  2:3247940/1‑93 (MQ=255)
                                                                                 aaTTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGAATTTACCAGCGAAACACACAATGCTTGCATATTCGTa        >  1:1596997/1‑93 (MQ=255)
                                                                                  aTTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTaa       <  1:2494966/93‑1 (MQ=255)
                                                                                     gACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCa    >  2:709661/1‑93 (MQ=255)
                                                                                     gACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCa    <  2:5407619/93‑1 (MQ=255)
                                                                                      aCTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCAt   <  2:3079649/93‑1 (MQ=255)
                                                                                      aCTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCAt   >  2:395725/1‑93 (MQ=255)
                                                                                      aCTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCAt   <  1:4639084/93‑1 (MQ=255)
                                                                                      aCTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCAt   <  2:6109973/93‑1 (MQ=255)
                                                                                            |                                                                                        
TAAATGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATC  >  NC_000913/4542548‑4542728

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AATGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTTTGGCT  >  NC_000913/4542550‑4542736
                                                                                             |                                                                                             
AATGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGT                                                                                               >  SRR4302541.5296070/1‑94 (MQ=60)
AATGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGG                                                                                               >  SRR4302541.4273469/1‑94 (MQ=60)
 ATGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGGG                                                                                              >  SRR4302541.2132311/1‑94 (MQ=60)
  TGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGA                                                                                            <  SRR4302541.4374605/94‑1 (MQ=60)
  TGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGA                                                                                            >  SRR4302541.3219296/1‑94 (MQ=60)
   TATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGAT                                                                                           <  SRR4302541.1200458/94‑1 (MQ=60)
   GATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGAT                                                                                           <  SRR4302541.1200459/94‑1 (MQ=60)
   GATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGAT                                                                                           <  SRR4302541.4850557/94‑1 (MQ=60)
   GATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGAT                                                                                           >  SRR4302541.150135/1‑94 (MQ=60)
    ATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATT                                                                                          >  SRR4302541.3044168/1‑94 (MQ=60)
     TTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTT                                                                                         >  SRR4302541.1123446/1‑94 (MQ=60)
      TATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTT                                                                                        <  SRR4302541.2907046/94‑1 (MQ=60)
      TATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTT                                                                                        >  SRR4302541.7644893/1‑94 (MQ=60)
       ATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTA                                                                                       >  SRR4302541.8476880/1‑94 (MQ=60)
       ATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTA                                                                                       >  SRR4302541.8845613/1‑94 (MQ=60)
       ATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTA                                                                                       >  SRR4302541.5252063/1‑94 (MQ=60)
       ATGGCGCACTTACCCCCAAAATGACGGCCGGAATGGAATAACGCAGGGGGAATCTTTCGCCTGAATCAAAAGAATTGACTGCC‑GGGTGATTTTA                                                                                       >  SRR4302541.2168841/1‑94 (MQ=60)
        TGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAA                                                                                      >  SRR4302541.1613064/1‑94 (MQ=60)
         GGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAG                                                                                     <  SRR4302541.612766/94‑1 (MQ=60)
          GCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGC                                                                                    <  SRR4302541.8267815/94‑1 (MQ=60)
           CGCACTTACCCCCAAAATGACGGGCGTAATTGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCC                                                                                   <  SRR4302541.4139103/94‑1 (MQ=60)
           CGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCC                                                                                   <  SRR4302541.4746608/94‑1 (MQ=60)
           CGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCC                                                                                   >  SRR4302541.6548689/1‑94 (MQ=60)
           CGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCC                                                                                   <  SRR4302541.5689956/94‑1 (MQ=60)
            GCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCG                                                                                  <  SRR4302541.156610/94‑1 (MQ=60)
             CACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGG                                                                                 >  SRR4302541.662585/1‑94 (MQ=60)
             CACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGG                                                                                 >  SRR4302541.7328130/1‑94 (MQ=60)
             CACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGG                                                                                 >  SRR4302541.6315595/1‑94 (MQ=60)
              ACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGA                                                                                >  SRR4302541.5485904/1‑94 (MQ=60)
              ACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGA                                                                                <  SRR4302541.3873903/94‑1 (MQ=60)
               CTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAG                                                                               >  SRR4302541.6195612/1‑94 (MQ=60)
               CTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAG                                                                               >  SRR4302541.8484055/1‑94 (MQ=60)
               CTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAG                                                                               <  SRR4302541.8479273/94‑1 (MQ=60)
                TTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGG                                                                              >  SRR4302541.6198347/1‑94 (MQ=60)
                 TACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGA                                                                             >  SRR4302541.6096105/1‑94 (MQ=60)
                 TACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGA                                                                             >  SRR4302541.6403139/1‑94 (MQ=60)
                  ACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAA                                                                            >  SRR4302541.2033772/1‑94 (MQ=60)
                  ACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAA                                                                            >  SRR4302541.679566/1‑94 (MQ=60)
                   CCCCCAAAATGGCGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAAT                                                                           <  SRR4302541.169967/94‑1 (MQ=60)
                   CCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAAT                                                                           <  SRR4302541.2243170/94‑1 (MQ=60)
                   CCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAAT                                                                           >  SRR4302541.4367640/1‑94 (MQ=60)
                   CCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAAT                                                                           >  SRR4302541.5782437/1‑94 (MQ=60)
                    CCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATA                                                                          <  SRR4302541.2375648/94‑1 (MQ=60)
                    CCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATA                                                                          >  SRR4302541.4159251/1‑94 (MQ=60)
                    CCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATA                                                                          >  SRR4302541.8744453/1‑94 (MQ=60)
                    CCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATA                                                                          <  SRR4302541.2821402/94‑1 (MQ=60)
                     CCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAA                                                                         >  SRR4302541.1715733/1‑94 (MQ=60)
                     CCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAA                                                                         >  SRR4302541.2600927/1‑94 (MQ=60)
                      CCAAAATGACGGGCGTAATGGAATAACGCAGTGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAAT                                                                        <  SRR4302541.4097041/94‑1 (MQ=60)
                      CCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAAT                                                                        <  SRR4302541.6882584/94‑1 (MQ=60)
                      CCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAAT                                                                        >  SRR4302541.5764396/1‑94 (MQ=60)
                      CCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAAT                                                                        <  SRR4302541.468743/94‑1 (MQ=60)
                       CAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATG                                                                       <  SRR4302541.708186/94‑1 (MQ=60)
                       CAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATG                                                                       >  SRR4302541.970180/1‑94 (MQ=60)
                       CAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATG                                                                       >  SRR4302541.3138585/1‑94 (MQ=60)
                       CAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATG                                                                       >  SRR4302541.6386756/1‑94 (MQ=60)
                        AAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGT                                                                      >  SRR4302541.6541882/1‑94 (MQ=60)
                        AAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGT                                                                      >  SRR4302541.4549166/1‑94 (MQ=60)
                         AAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTC                                                                     >  SRR4302541.6745840/1‑94 (MQ=60)
                         AAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTC                                                                     >  SRR4302541.7280239/1‑94 (MQ=60)
                         AAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTC                                                                     >  SRR4302541.181145/1‑94 (MQ=60)
                         AAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTC                                                                     >  SRR4302541.4783129/1‑94 (MQ=60)
                         AAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTC                                                                     <  SRR4302541.8844084/94‑1 (MQ=60)
                          AATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCA                                                                    <  SRR4302541.2599406/94‑1 (MQ=60)
                            TGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATA                                                                  <  SRR4302541.5553297/94‑1 (MQ=60)
                             GACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATAT                                                                 <  SRR4302541.2478744/94‑1 (MQ=60)
                              ACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATC                                                                <  SRR4302541.8363149/94‑1 (MQ=60)
                              ACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATC                                                                >  SRR4302541.8175729/1‑94 (MQ=60)
                               CGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATCTCT                                                               >  SRR4302541.574182/1‑94 (MQ=60)
                                GGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTG                                                              >  SRR4302541.4584550/1‑94 (MQ=60)
                                GGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTG                                                              >  SRR4302541.7750392/1‑94 (MQ=60)
                                GGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTG                                                              >  SRR4302541.4000849/1‑94 (MQ=60)
                                GGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTG                                                              >  SRR4302541.7784379/1‑94 (MQ=60)
                                GGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTG                                                              >  SRR4302541.5122853/1‑94 (MQ=60)
                                    GTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATT                                                          >  SRR4302541.4813849/1‑94 (MQ=60)
                                    GTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATT                                                          >  SRR4302541.3445431/1‑94 (MQ=60)
                                        atGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAG                                                      <  SRR4302541.1402678/92‑1 (MQ=60)
                                        TGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAG                                                      <  SRR4302541.6701657/94‑1 (MQ=60)
                                        TGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAG                                                      >  SRR4302541.7436201/1‑94 (MQ=60)
                                        TGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAG                                                      >  SRR4302541.858213/1‑94 (MQ=60)
                                         TGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGA                                                     <  SRR4302541.2887857/94‑1 (MQ=60)
                                         GGAATAACGCAGGGGGAGTTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGA                                                     <  SRR4302541.6618815/94‑1 (MQ=60)
                                         GGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGA                                                     >  SRR4302541.8539985/1‑94 (MQ=60)
                                         GGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGA                                                     <  SRR4302541.5798547/94‑1 (MQ=60)
                                          GAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGAT                                                    >  SRR4302541.6667767/1‑94 (MQ=60)
                                          GAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGAC                                                    <  SRR4302541.250686/94‑1 (MQ=60)
                                          GAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGAC                                                    <  SRR4302541.301676/94‑1 (MQ=60)
                                          GAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGAC                                                    >  SRR4302541.6861266/1‑94 (MQ=60)
                                          GAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGAC                                                    >  SRR4302541.6041294/1‑94 (MQ=60)
                                           AATGACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGGCTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGAAT                                                   <  SRR4302541.1504315/94‑1 (MQ=60)
                                           AATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACT                                                   <  SRR4302541.4661787/94‑1 (MQ=60)
                                            ATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTT                                                  >  SRR4302541.6430280/1‑94 (MQ=60)
                                            ATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTT                                                  >  SRR4302541.4622844/1‑94 (MQ=60)
                                             TAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTT                                                 >  SRR4302541.3761669/1‑94 (MQ=60)
                                             TAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTT                                                 <  SRR4302541.8381268/94‑1 (MQ=60)
                                              AACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTA                                                >  SRR4302541.4297118/1‑94 (MQ=60)
                                              AACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTA                                                >  SRR4302541.3782037/1‑94 (MQ=60)
                                               ACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTAC                                               <  SRR4302541.7841310/94‑1 (MQ=60)
                                               ACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTAC                                               <  SRR4302541.4006114/94‑1 (MQ=60)
                                                CGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACC                                              <  SRR4302541.3701524/94‑1 (MQ=60)
                                                CGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACC                                              <  SRR4302541.2068970/94‑1 (MQ=60)
                                                 GCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCA                                             <  SRR4302541.3653968/94‑1 (MQ=60)
                                                  CAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAG                                            >  SRR4302541.8391642/1‑94 (MQ=60)
                                                  CAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAG                                            >  SRR4302541.6700460/1‑94 (MQ=60)
                                                  CAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAG                                            <  SRR4302541.1855043/94‑1 (MQ=60)
                                                  CAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAG                                            >  SRR4302541.7330101/1‑94 (MQ=60)
                                                  CAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAG                                            >  SRR4302541.5013888/1‑94 (MQ=60)
                                                  CAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAG                                            >  SRR4302541.7449299/1‑94 (MQ=60)
                                                  CAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAG                                            <  SRR4302541.8486597/94‑1 (MQ=60)
                                                   AGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGC                                           <  SRR4302541.987834/94‑1 (MQ=60)
                                                   AGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGC                                           >  SRR4302541.6149845/1‑94 (MQ=60)
                                                   AGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGC                                           <  SRR4302541.3913532/94‑1 (MQ=60)
                                                   AGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGC                                           <  SRR4302541.1172445/94‑1 (MQ=60)
                                                   AGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGC                                           <  SRR4302541.1397504/94‑1 (MQ=60)
                                                   AGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGC                                           <  SRR4302541.1743750/94‑1 (MQ=60)
                                                    GGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCG                                          >  SRR4302541.6357259/1‑94 (MQ=60)
                                                    GGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCG                                          <  SRR4302541.1746320/94‑1 (MQ=60)
                                                     GGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGA                                         >  SRR4302541.4319180/1‑94 (MQ=60)
                                                      GGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAA                                        <  SRR4302541.136513/94‑1 (MQ=60)
                                                       GGAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCTGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAA                                       >  SRR4302541.4172096/1‑94 (MQ=60)
                                                        GAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAAC                                      <  SRR4302541.8117805/94‑1 (MQ=60)
                                                        GAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAAC                                      <  SRR4302541.1225655/94‑1 (MQ=60)
                                                        GAATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAAC                                      <  SRR4302541.1741304/94‑1 (MQ=60)
                                                         AATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACA                                     >  SRR4302541.6415857/1‑94 (MQ=60)
                                                         AATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACA                                     >  SRR4302541.5595332/1‑94 (MQ=60)
                                                          ATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACAC                                    <  SRR4302541.5874391/94‑1 (MQ=60)
                                                          ATTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACAC                                    <  SRR4302541.5543072/94‑1 (MQ=60)
                                                           TTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACA                                   >  SRR4302541.7472564/1‑94 (MQ=60)
                                                           TTTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACA                                   <  SRR4302541.144182/94‑1 (MQ=60)
                                                            TTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACAC                                  >  SRR4302541.4549800/1‑94 (MQ=60)
                                                            TTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACAC                                  >  SRR4302541.6752472/1‑94 (MQ=60)
                                                            TTTTCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACAC                                  <  SRR4302541.5288875/94‑1 (MQ=60)
                                                               TCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAAT                               >  SRR4302541.3894889/1‑94 (MQ=60)
                                                               TCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAAT                               <  SRR4302541.3200874/94‑1 (MQ=60)
                                                               TCGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAAT                               <  SRR4302541.3075829/94‑1 (MQ=60)
                                                                CGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGCCTTTACCAGCGAAACACACAATG                              <  SRR4302541.8133621/94‑1 (MQ=60)
                                                                CGCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATG                              >  SRR4302541.2681520/1‑94 (MQ=60)
                                                                 GCCTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGC                             >  SRR4302541.6527962/1‑94 (MQ=60)
                                                                   CTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACTCACAATGCTT                           >  SRR4302541.8214639/1‑94 (MQ=60)
                                                                   CTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTT                           <  SRR4302541.3861847/94‑1 (MQ=60)
                                                                   CTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTT                           >  SRR4302541.5418856/1‑94 (MQ=60)
                                                                   CTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTT                           >  SRR4302541.4894696/1‑94 (MQ=60)
                                                                   CTGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTT                           >  SRR4302541.6756937/1‑94 (MQ=60)
                                                                    TGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTG                          <  SRR4302541.6060863/94‑1 (MQ=60)
                                                                    TGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTG                          >  SRR4302541.1917172/1‑94 (MQ=60)
                                                                    TGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTG                          >  SRR4302541.4091999/1‑94 (MQ=60)
                                                                    TGAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTG                          <  SRR4302541.2862925/94‑1 (MQ=60)
                                                                     GAATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGC                         <  SRR4302541.5579625/94‑1 (MQ=60)
                                                                      AATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCA                        >  SRR4302541.4257587/1‑94 (MQ=60)
                                                                       ATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCAT                       >  SRR4302541.2131069/1‑94 (MQ=60)
                                                                       ATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCAT                       <  SRR4302541.186793/94‑1 (MQ=60)
                                                                       ATAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCAT                       >  SRR4302541.1570084/1‑94 (MQ=60)
                                                                        TAAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTACGACTTTACCAGCGAAACACACAATGCTTGCATA                      >  SRR4302541.8562095/1‑94 (MQ=60)
                                                                         AAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATAT                     >  SRR4302541.2554864/1‑94 (MQ=60)
                                                                         AAAAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATAT                     <  SRR4302541.4232137/94‑1 (MQ=60)
                                                                           AAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTC                   <  SRR4302541.2185566/94‑1 (MQ=60)
                                                                           AAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTC                   >  SRR4302541.2108559/1‑94 (MQ=60)
                                                                           AAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTC                   <  SRR4302541.1796954/94‑1 (MQ=60)
                                                                           AAAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTC                   <  SRR4302541.300315/94‑1 (MQ=60)
                                                                            AAGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCG                  <  SRR4302541.7779184/94‑1 (MQ=60)
                                                                             AGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGT                 >  SRR4302541.4835033/1‑94 (MQ=60)
                                                                             AGAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGT                 <  SRR4302541.7810659/94‑1 (MQ=60)
                                                                             AGAATTGACTGCC‑GGGTGATTTTAAGCCGGAAGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGT                 <  SRR4302541.7810660/94‑1 (MQ=60)
                                                                             AGAATTGACTGCC‑GGGTGATTTTAAACCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGT                 <  SRR4302541.7810663/94‑1 (MQ=60)
                                                                              GAATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGAATTTACCAGCGAAACACACAATGCTTGCATATTCGTA                >  SRR4302541.1612897/1‑94 (MQ=60)
                                                                               AATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAA               <  SRR4302541.1864471/94‑1 (MQ=60)
                                                                               AATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAA               >  SRR4302541.2927363/1‑94 (MQ=60)
                                                                                ATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAG              <  SRR4302541.2520129/94‑1 (MQ=60)
                                                                                ATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAG              <  SRR4302541.2858729/94‑1 (MQ=60)
                                                                                ATTGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAG              <  SRR4302541.5128891/94‑1 (MQ=60)
                                                                                  TGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCA            <  SRR4302541.8892135/94‑1 (MQ=60)
                                                                                  TGACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCA            >  SRR4302541.5575794/1‑94 (MQ=60)
                                                                                    ACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATC          <  SRR4302541.4686301/94‑1 (MQ=60)
                                                                                    ACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATC          <  SRR4302541.7067309/94‑1 (MQ=60)
                                                                                    ACTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATC          >  SRR4302541.5267622/1‑94 (MQ=60)
                                                                                     CTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCT         >  SRR4302541.4836688/1‑94 (MQ=60)
                                                                                     CTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCG         >  SRR4302541.4747134/1‑94 (MQ=60)
                                                                                     CTGCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCG         <  SRR4302541.3921596/94‑1 (MQ=60)
                                                                                       GCC‑GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTT       <  SRR4302541.8013116/94‑1 (MQ=60)
                                                                                         CCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTTT      >  SRR4302541.1613891/1‑94 (MQ=60)
                                                                                         CCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTTT      >  SRR4302541.437036/1‑94 (MQ=60)
                                                                                          CGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTATCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTTTG     >  SRR4302541.3894256/1‑94 (MQ=60)
                                                                                          CGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTTTG     >  SRR4302541.1123454/1‑94 (MQ=60)
                                                                                          CGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTTTG     <  SRR4302541.8099646/94‑1 (MQ=60)
                                                                                          CGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTTTG     >  SRR4302541.1123456/1‑94 (MQ=60)
                                                                                          CGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTTTG     >  SRR4302541.225454/1‑94 (MQ=60)
                                                                                          CGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTTTG     <  SRR4302541.4726070/94‑1 (MQ=60)
                                                                                          CGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTTTG     >  SRR4302541.6837306/1‑94 (MQ=60)
                                                                                           GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTTTGT    >  SRR4302541.4972647/1‑94 (MQ=60)
                                                                                           GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTTTGG    >  SRR4302541.3763574/1‑94 (MQ=60)
                                                                                           GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTTTGG    <  SRR4302541.3581687/94‑1 (MQ=60)
                                                                                           GGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTTTGG    >  SRR4302541.4981132/1‑94 (MQ=60)
                                                                                            GGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTTTGGC   <  SRR4302541.424292/94‑1 (MQ=60)
                                                                                             GTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTTTGGCT  <  SRR4302541.6119267/94‑1 (MQ=60)
                                                                                             |                                                                                             
AATGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACAATGCTTGCATATTCGTAAGCATCGTTTGGCT  >  NC_000913/4542550‑4542736

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑