Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 744 338.8 17650688 97.8% 17262372 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CTTCGCCAGTCGGGCCGCAGGCGATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGTGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGGTCACCGGCGATCCCGGAGATTGGAATAC  >  NC_000913/4113908‑4114093
                                                                                             |                                                                                            
CTTCGCCAGTCGGGCCGCAGGCGATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGC                                                                                              >  SRR4302541.4241448/1‑94 (MQ=60)
 TTCGCCAGTCGGGCCGCAGGCGATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCG                                                                                             >  SRR4302541.3505680/1‑94 (MQ=60)
 TTCGCCAGTCGGGCCGCAGGCGATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCG                                                                                             >  SRR4302541.8188486/1‑94 (MQ=60)
  TCGCCAGTCGGGCCGCAGGCGATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGC                                                                                            >  SRR4302541.2313342/1‑94 (MQ=60)
   CGCCAGTCGGGCCGCAGGCGATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGTGCC                                                                                           >  SRR4302541.7469724/1‑94 (MQ=60)
    GCCAGTCGGGCCGCAGGCGATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGTGCCA                                                                                          <  SRR4302541.4206394/94‑1 (MQ=60)
    GCCAGTCGGGCCGCAGGCGATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCA                                                                                          >  SRR4302541.7449563/1‑94 (MQ=60)
      CAGTCGGGCCGCAGGCGATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATA                                                                                        >  SRR4302541.5881160/1‑94 (MQ=60)
      CAGTCGGGCCGCAGGCGATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATA                                                                                        >  SRR4302541.5881161/1‑94 (MQ=60)
      CAGGCGGGCCGCAGGCGAGGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATA                                                                                        <  SRR4302541.4321521/94‑1 (MQ=60)
       AGTCGGGCCGCAGGCGATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGTGCCATAG                                                                                       <  SRR4302541.5663522/94‑1 (MQ=60)
        GTCGGGCCGCAGGCGATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGG                                                                                      <  SRR4302541.1930009/94‑1 (MQ=60)
        GTCGGGCCGCAGGCGATGGTGGTCAGCAGGCCGGTTTCTGATTTCACCGCTTTCTCGCCAGTGGTCCTCAGCATAAAGCAGCCAGTGCCAAAGG                                                                                      >  SRR4302541.1614641/1‑94 (MQ=60)
        GTCGGGCCGCAGGCAATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGTGCCATAGG                                                                                      <  SRR4302541.7682479/94‑1 (MQ=60)
         TCGGGCCGCAGGCGATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGT                                                                                     >  SRR4302541.4789830/1‑94 (MQ=60)
         GCGGGCCGCAGGCGATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGTGCCATAGGT                                                                                     <  SRR4302541.3525800/94‑1 (MQ=60)
          cacgcctcagtgtatggtgggcagcctgcccgtcTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGTGCCATAGGTG                                                                                    <  SRR4302541.7939463/60‑1 (MQ=60)
          CGGGCCGCAGGCGATGTTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGTGCCATAGGTG                                                                                    <  SRR4302541.7939464/94‑1 (MQ=60)
          CGGGCCGCAGGCGATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGTGCCATAGGTG                                                                                    <  SRR4302541.7939462/94‑1 (MQ=60)
          CGGGCCGCAGGCGATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTG                                                                                    >  SRR4302541.2649396/1‑94 (MQ=60)
          CGGGCCGCAGGCGATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTG                                                                                    >  SRR4302541.3312886/1‑94 (MQ=60)
           GGGCCGCAGGCGATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGT                                                                                   >  SRR4302541.6367907/1‑94 (MQ=60)
           GGGCCGCAGGCGATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGGTCATCAGCATAAAGCAGCCAGCGCCATAGGTGT                                                                                   >  SRR4302541.7894379/1‑94 (MQ=60)
             GCCGCAGGCGATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGTGCCATAGGTGTTC                                                                                 <  SRR4302541.2309470/94‑1 (MQ=60)
             GCCGCAGGCGATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTC                                                                                 <  SRR4302541.4025460/94‑1 (MQ=60)
               CGCAGGCGATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTT                                                                               >  SRR4302541.1692067/1‑94 (MQ=60)
               CGCAGGCGATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTT                                                                               <  SRR4302541.633153/94‑1 (MQ=60)
               CGCAGGCGATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTT                                                                               <  SRR4302541.4663268/94‑1 (MQ=60)
                GCAGGCGATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTC                                                                              <  SRR4302541.3559818/94‑1 (MQ=60)
                GCAGGCGATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTC                                                                              <  SRR4302541.4704808/94‑1 (MQ=60)
                GCAGGCGATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTC                                                                              <  SRR4302541.1074227/94‑1 (MQ=60)
                GCAGGCGATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTC                                                                              >  SRR4302541.8740369/1‑94 (MQ=60)
                 CAGGCGATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCG                                                                             <  SRR4302541.5801445/94‑1 (MQ=60)
                 CAGGCGATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCG                                                                             <  SRR4302541.5485590/94‑1 (MQ=60)
                   GGCGATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGTGCCATAGGTGTTCTTCGCC                                                                           >  SRR4302541.1761681/1‑94 (MQ=60)
                   GGCGATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCC                                                                           <  SRR4302541.7959088/94‑1 (MQ=60)
                   GGCGATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCC                                                                           >  SRR4302541.8157529/1‑94 (MQ=60)
                     CGATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGTGCCATAGGTGTTCTTCGCCAT                                                                         >  SRR4302541.491608/1‑94 (MQ=60)
                     CGATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCAT                                                                         >  SRR4302541.2731648/1‑94 (MQ=60)
                     CGATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCAT                                                                         <  SRR4302541.2618912/94‑1 (MQ=60)
                      GATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGTGCCATAGGTGTTCTTCGCCATC                                                                        >  SRR4302541.2547534/1‑94 (MQ=60)
                      GATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATC                                                                        <  SRR4302541.8683512/94‑1 (MQ=60)
                      GATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATC                                                                        >  SRR4302541.2553986/1‑94 (MQ=60)
                       ATGGTGGTCAGCAGGCCGTTTTCTGATTGCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCC                                                                       <  SRR4302541.496243/94‑1 (MQ=60)
                        TGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCCTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGTGCCATAGGTGTTCTTCGCCATCCC                                                                      >  SRR4302541.8382632/1‑94 (MQ=60)
                        TGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCCTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGTGCCATAGGTGTTCTTCGCCATCCC                                                                      >  SRR4302541.8382631/1‑94 (MQ=60)
                         gtggttgAGCAGGCCGTTGTCTGATTTCACCGCTTTCGCCCCAGGGTTCATCAGCATAAAGCAGCCAGTGCCATAGGTGTTCTTCGCCATCCCT                                                                     <  SRR4302541.6522320/87‑1 (MQ=60)
                         GGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGTGCCATAGGTGTTCTTCGCCATCCCT                                                                     <  SRR4302541.6826373/94‑1 (MQ=60)
                         GGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGTGCCATAGGTGTTCTTCGCCATCCCT                                                                     <  SRR4302541.6522321/94‑1 (MQ=60)
                         GGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCT                                                                     >  SRR4302541.3359560/1‑94 (MQ=60)
                          GTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGTGCCATAGGTGTTCTTCGCCATCCCTT                                                                    <  SRR4302541.6659211/94‑1 (MQ=60)
                          GTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTT                                                                    <  SRR4302541.6256560/94‑1 (MQ=60)
                           TGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTC                                                                   <  SRR4302541.5935010/94‑1 (MQ=60)
                           TGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTC                                                                   <  SRR4302541.4726395/94‑1 (MQ=60)
                            GGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGTGCCATAGGTGTTCTTCGCCATCCCTTCT                                                                  <  SRR4302541.4238359/94‑1 (MQ=60)
                            GGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGTGCCATAGGTGTTCTTCGCCATCCCTTCT                                                                  >  SRR4302541.653421/1‑94 (MQ=60)
                            GGTCAGCAGGCCGTTGTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCT                                                                  <  SRR4302541.4866391/94‑1 (MQ=60)
                             GTCAGCAGGCCGTTTTCGGCTTTCACCCCTTTCTCCCCAGTGTTCATCAACACAAAGCAGCCAGCCCCATAGGTGTTCTTCGCCATCCCTTCTT                                                                 <  SRR4302541.2410015/94‑1 (MQ=60)
                                AGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGTGCCATAGGTGTTCTTCGCCATCCCTTCTTTCA                                                              >  SRR4302541.4754428/1‑94 (MQ=60)
                                 GCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGTGCCATAGGTGTTCTTCGCCATCCCTTCTTTCAC                                                             <  SRR4302541.3542803/94‑1 (MQ=60)
                                  CAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACG                                                            <  SRR4302541.2788502/94‑1 (MQ=60)
                                   AGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGTGGCCCGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGC                                                           >  SRR4302541.6496556/1‑94 (MQ=60)
                                   AGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGC                                                           >  SRR4302541.3917525/1‑94 (MQ=60)
                                    GGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGTGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCA                                                          <  SRR4302541.8614940/94‑1 (MQ=60)
                                     GCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCAC                                                         <  SRR4302541.8797872/94‑1 (MQ=60)
                                     GCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCAC                                                         <  SRR4302541.5577261/94‑1 (MQ=60)
                                       CGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGTGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAA                                                       >  SRR4302541.1154862/1‑94 (MQ=60)
                                        GTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAAC                                                      >  SRR4302541.5201047/1‑94 (MQ=60)
                                           TTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGA                                                   <  SRR4302541.7165355/94‑1 (MQ=60)
                                            TCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGAC                                                  <  SRR4302541.2892725/94‑1 (MQ=60)
                                            TCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGAC                                                  >  SRR4302541.7197352/1‑94 (MQ=60)
                                              TGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCA                                                >  SRR4302541.5072738/1‑94 (MQ=60)
                                              TGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCA                                                >  SRR4302541.4842832/1‑94 (MQ=60)
                                              TGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCA                                                >  SRR4302541.61871/1‑94 (MQ=60)
                                              TGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCA                                                <  SRR4302541.5462176/94‑1 (MQ=60)
                                               GATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGTCAGTGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAA                                               >  SRR4302541.979781/1‑94 (MQ=60)
                                               GATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGTGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAA                                               >  SRR4302541.6818991/1‑94 (MQ=60)
                                               GATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGTGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAA                                               <  SRR4302541.4334191/94‑1 (MQ=60)
                                               GATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAA                                               >  SRR4302541.5262791/1‑94 (MQ=60)
                                                 TTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGTGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAAC                                             >  SRR4302541.1008956/1‑94 (MQ=60)
                                                   TCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGTGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAG                                           <  SRR4302541.1732430/94‑1 (MQ=60)
                                                    CACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGTGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGC                                          >  SRR4302541.7170995/1‑94 (MQ=60)
                                                    CACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGC                                          <  SRR4302541.806550/94‑1 (MQ=60)
                                                     ACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGTGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCG                                         <  SRR4302541.7113217/94‑1 (MQ=60)
                                                      CCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGTGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGC                                        <  SRR4302541.8603598/94‑1 (MQ=60)
                                                      CCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGTGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGC                                        <  SRR4302541.8177746/94‑1 (MQ=60)
                                                      CCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGC                                        <  SRR4302541.4481819/94‑1 (MQ=60)
                                                        GCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGG                                      >  SRR4302541.972693/1‑94 (MQ=60)
                                                        GCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACAAAACAGCGCGC                                      >  SRR4302541.7024324/1‑94 (MQ=60)
                                                         CTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGC                                     <  SRR4302541.4768985/94‑1 (MQ=60)
                                                         CTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCATTCTTTCACGCACAACTGACCAAACAGCGCGGC                                     >  SRR4302541.8215381/1‑94 (MQ=60)
                                                           TTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCT                                   >  SRR4302541.1663426/1‑94 (MQ=60)
                                                           TTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCT                                   <  SRR4302541.2071925/94‑1 (MQ=60)
                                                            TCTCGTCAGTGTTCATCAGCAAAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTG                                  <  SRR4302541.2151587/94‑1 (MQ=60)
                                                             CTCGCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGC                                 >  SRR4302541.5664264/1‑94 (MQ=60)
                                                                GCCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGG                              >  SRR4302541.1979638/1‑94 (MQ=60)
                                                                 CCAGTGTTCATCAGCATAAAGCAGCCAGTGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGGT                             >  SRR4302541.5569136/1‑94 (MQ=60)
                                                                 CCAGTGTTCATCAGCATAAAGCAGCCAGTGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGGT                             <  SRR4302541.2965932/94‑1 (MQ=60)
                                                                 CCAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGGT                             <  SRR4302541.5124223/94‑1 (MQ=60)
                                                                  CAGTGTTCATCAGCATAAAGCAGCCAGTGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGGTC                            <  SRR4302541.4612442/94‑1 (MQ=60)
                                                                  CAGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGGGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCGGCTGGTC                            >  SRR4302541.505032/1‑94 (MQ=60)
                                                                   AGTGTTCATCAGCATAAAGCAGCCAGTGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGGTCA                           >  SRR4302541.3148704/1‑94 (MQ=60)
                                                                   AGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGGTCA                           >  SRR4302541.6465231/1‑94 (MQ=60)
                                                                   AGTGTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGGTCA                           >  SRR4302541.5569297/1‑94 (MQ=60)
                                                                    GTGTTCATCAGCATAAAGCAGCCAGTGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGGTCAC                          >  SRR4302541.7425400/1‑94 (MQ=60)
                                                                      GTTCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGGTCACCG                        <  SRR4302541.4245617/94‑1 (MQ=60)
                                                                       TTCATCAGCATAAAGCAGCCAGTGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGGTCACCGG                       <  SRR4302541.1698447/94‑1 (MQ=60)
                                                                        TCATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGGTCACCGGC                      <  SRR4302541.2971212/94‑1 (MQ=60)
                                                                         CATCAGCATAAAGCAGCCAGTGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGGTCACCGGCG                     >  SRR4302541.3320810/1‑94 (MQ=60)
                                                                         CATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGGTCACCGGCG                     >  SRR4302541.6303924/1‑94 (MQ=60)
                                                                         CATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTAACCAAACAGCGCGGCCTGCTGGTCACCGGCG                     <  SRR4302541.5914553/94‑1 (MQ=60)
                                                                          ATCAGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGGTCACCGGCGA                    <  SRR4302541.5726515/94‑1 (MQ=60)
                                                                           TCAGCATAAAGCAGCCAGTGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGGTCACCGGCGAT                   >  SRR4302541.7360720/1‑94 (MQ=60)
                                                                             AGCATAAAGCAGCCAGTGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGGTCACCGGCGATCC                 >  SRR4302541.3424419/1‑94 (MQ=60)
                                                                             AGCATAAAGCAGCCAGTGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGGTCACCGGCGACCC                 >  SRR4302541.2815768/1‑94 (MQ=60)
                                                                             AGCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGGTCACCGGCGATCC                 >  SRR4302541.5841604/1‑94 (MQ=60)
                                                                              GCATAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGGTCACCGGCGATCCC                <  SRR4302541.3665067/94‑1 (MQ=60)
                                                                                ATAAAGCAGCCAGTGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGGTCACCGGCGATCCCGG              >  SRR4302541.8197694/1‑94 (MQ=60)
                                                                                 TAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGGTCACCGGCGATCCCGGA             >  SRR4302541.4125601/1‑94 (MQ=60)
                                                                                 TAAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGGTCACCGGCGATCCCGGA             >  SRR4302541.6251780/1‑94 (MQ=60)
                                                                                  AAAGCAGCCAGTGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGGTCACCGGCGATCCCGGAG            >  SRR4302541.8795789/1‑94 (MQ=60)
                                                                                  AAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGGTCACCGGCGATCCCGGAG            >  SRR4302541.64815/1‑94 (MQ=60)
                                                                                  AAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGGTCACCGGCGATCCCGGAG            <  SRR4302541.5463064/94‑1 (MQ=60)
                                                                                  AAAGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGGTCACCGGCGATCCCGGAG            <  SRR4302541.4705415/94‑1 (MQ=60)
                                                                                    AGCAGCCAGTGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGGTCACCGGCGATCCCGGAGAT          <  SRR4302541.7211869/94‑1 (MQ=60)
                                                                                    AGCAGCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGGTCACCGGCGATCCCGGAGAT          <  SRR4302541.539208/94‑1 (MQ=60)
                                                                                      CAGCCAGTGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGGTCACCGGCGATCCCGGAGATTG        <  SRR4302541.5113643/94‑1 (MQ=60)
                                                                                        GCCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGGTCACCGGCGATCCCGGAGATTGGA      <  SRR4302541.6567991/94‑1 (MQ=60)
                                                                                         CCAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGGTCACCGGCGATCCCGGAGATTGGAA     >  SRR4302541.453471/1‑94 (MQ=60)
                                                                                          CAGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGGTCACCGGCGATCCCGGAGATTGGAAT    <  SRR4302541.3722263/94‑1 (MQ=60)
                                                                                           AGTGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGGTCACCGGCGATCCCGGAGATTGGAATA   >  SRR4302541.7247222/1‑94 (MQ=60)
                                                                                           AGCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGGTCACCGGCGATCCCGGAGATTGGAATA   <  SRR4302541.8255187/94‑1 (MQ=60)
                                                                                            GCGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGGTCACCGGCGATCCCGGAGATTGGAATAC  <  SRR4302541.4881889/94‑1 (MQ=60)
                                                                                             |                                                                                            
CTTCGCCAGTCGGGCCGCAGGCGATGGTGGTCAGCAGGCCGTTTTCTGATTTCACCGCTTTCTCGCCAGTGTTCATCAGCATAAAGCAGCCAGTGCCATAGGTGTTCTTCGCCATCCCTTCTTTCACGCACAACTGACCAAACAGCGCGGCCTGCTGGTCACCGGCGATCCCGGAGATTGGAATAC  >  NC_000913/4113908‑4114093

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑