Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 744 338.8 17650688 97.8% 17262372 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCATCAAA  >  NC_000913/4205534‑4205719
                                                                                             |                                                                                            
GCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATA                                                                                              <  SRR4302541.3720738/94‑1 (MQ=50)
  GTAATATACGCCACCTCGCGACAGTGCGCTAACGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATGCG                                                                                            <  SRR4302541.6744957/94‑1 (MQ=44)
  GTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATGCG                                                                                            >  SRR4302541.3889145/1‑94 (MQ=49)
   TAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATGCGG                                                                                           >  SRR4302541.8722349/1‑94 (MQ=48)
   TAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGG                                                                                           >  SRR4302541.2911113/1‑94 (MQ=50)
    AATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATGCGGA                                                                                          >  SRR4302541.2691785/1‑94 (MQ=48)
     ATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATGCGGAT                                                                                         >  SRR4302541.1125440/1‑94 (MQ=48)
     ATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATGCGGAT                                                                                         >  SRR4302541.8427489/1‑94 (MQ=48)
     ATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATGCGGAT                                                                                         <  SRR4302541.5075035/94‑1 (MQ=48)
     ATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATGCGGAT                                                                                         >  SRR4302541.6571652/1‑94 (MQ=48)
     ATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATGCGGAT                                                                                         <  SRR4302541.4952063/94‑1 (MQ=48)
      TATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATT                                                                                        <  SRR4302541.1753903/94‑1 (MQ=50)
        TACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATGTGGATTCT                                                                                      <  SRR4302541.7181515/94‑1 (MQ=46)
         ACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTT                                                                                     <  SRR4302541.1793136/94‑1 (MQ=50)
           GCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATGCGGATTCTTAA                                                                                   >  SRR4302541.5226312/1‑94 (MQ=48)
            CCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATGCGGATTCTTAAC                                                                                  <  SRR4302541.4839733/94‑1 (MQ=48)
            CCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATGCGGATTCTTAAC                                                                                  <  SRR4302541.5024385/94‑1 (MQ=48)
            CCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAAC                                                                                  <  SRR4302541.6306842/94‑1 (MQ=50)
             CACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATGCGGATTCTTAACG                                                                                 >  SRR4302541.8319004/1‑94 (MQ=48)
             CACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATGCGGATTCTTAACG                                                                                 >  SRR4302541.5974201/1‑94 (MQ=48)
             CACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATGCGGATTCTTAACG                                                                                 <  SRR4302541.5475792/94‑1 (MQ=48)
             CACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATGCGGATTCTTAACG                                                                                 >  SRR4302541.6363220/1‑94 (MQ=48)
              ACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATGCGGATTCTTAACGT                                                                                >  SRR4302541.5118210/1‑94 (MQ=48)
              ACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATGCGGATTCTTAACGT                                                                                >  SRR4302541.7082548/1‑94 (MQ=48)
              ACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATGCGGATTCTTAACGT                                                                                >  SRR4302541.2202172/1‑94 (MQ=48)
              ACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATGCGGATTCTTAACGT                                                                                >  SRR4302541.4910202/1‑94 (MQ=48)
               CCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATGCGGATTCTTAACGTC                                                                               >  SRR4302541.6610481/1‑94 (MQ=48)
                CTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATGCGGATTCTTAACGTCG                                                                              <  SRR4302541.4800239/94‑1 (MQ=48)
                CTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCG                                                                              <  SRR4302541.8314230/94‑1 (MQ=50)
                CTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCG                                                                              <  SRR4302541.7497849/94‑1 (MQ=50)
                 TCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGC                                                                             <  SRR4302541.1342714/94‑1 (MQ=50)
                  CGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCA                                                                            >  SRR4302541.3411328/1‑94 (MQ=47)
                   GCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATGCGGATTCTTAACGTCGCAA                                                                           >  SRR4302541.7985854/1‑94 (MQ=43)
                    CGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAG                                                                          >  SRR4302541.6424482/1‑94 (MQ=42)
                     GACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATGCGGATTCTTAACGTCGCAAGA                                                                         >  SRR4302541.4215063/1‑94 (MQ=38)
                     GACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGA                                                                         >  SRR4302541.4404804/1‑94 (MQ=39)
                     GACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGA                                                                         <  SRR4302541.7634190/94‑1 (MQ=39)
                        AGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATGCGGATTCTTAACGTCGCAAGACGA                                                                      >  SRR4302541.689991/1‑94 (MQ=30)
                        AGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATCTATCAGACAATCTGTGTGGGCACTCGAAGATGCGGATTCTTAACGTCGCAAGACGA                                                                      >  SRR4302541.8205107/1‑94 (MQ=29)
                         GTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATGCGGATTCTTAACGTCGCAAGACGAA                                                                     <  SRR4302541.1830049/94‑1 (MQ=28)
                         GTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAA                                                                     <  SRR4302541.7842100/94‑1 (MQ=29)
                            CGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAA                                                                  >  SRR4302541.149339/1‑94 (MQ=21)
                             GCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCCGCCACTCTGTGTGGGAACTCTAAAATCCGGATTCTTAACGTCGCcagccgacacat                                                                 >  SRR4302541.3844089/1‑82 (MQ=9)
                             GCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAAT                                                                 >  SRR4302541.3844090/1‑94 (MQ=13)
                             GCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGACTCTTAACGTCGCAAGACGAAAAAT                                                                 >  SRR4302541.8427480/1‑94 (MQ=13)
                              CTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATGCGGATTCTTAACGTCGCAAGACGAAAAATG                                                                >  SRR4302541.7319636/1‑94 (MQ=10)
                              CTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATGCGGATTCTTAACGTCGCAAGACGAAAAATG                                                                >  SRR4302541.7748169/1‑94 (MQ=10)
                                AAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATGCGGATTCTTAACGTCGCAAGACGAAAAATGAA                                                              >  SRR4302541.8315513/1‑94 (MQ=5)
                                 AAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATGCGGATTCTTAACGTCGCAAGACGAAAAATGAAT                                                             <  SRR4302541.3954353/94‑1 (MQ=3)
                                  AGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATGCGGATTCTTAACGTCGCAAGACGAAAAATGAATA                                                            >  SRR4302541.5604698/1‑94 (MQ=0)
                                  AGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATGAGGATTCTTAACGTCGGAGGACGAAAAATGAATA                                                            >  SRR4302541.7187346/1‑94 (MQ=0)
                                  AGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATA                                                            <  SRR4302541.3246019/94‑1 (MQ=0)
                                    CGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACC                                                          <  SRR4302541.576999/94‑1 (MQ=0)
                                      CGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAA                                                        <  SRR4302541.5900287/94‑1 (MQ=0)
                                      CGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAA                                                        <  SRR4302541.2848296/94‑1 (MQ=0)
                                      CGTCACAACTGGTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAA                                                        <  SRR4302541.1151207/94‑1 (MQ=0)
                                       GTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATGCGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAG                                                       >  SRR4302541.3886609/1‑94 (MQ=0)
                                       GTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAG                                                       <  SRR4302541.5309194/94‑1 (MQ=0)
                                         CGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTC                                                     <  SRR4302541.3140159/94‑1 (MQ=0)
                                          GCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATGCGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCT                                                    >  SRR4302541.4746972/1‑94 (MQ=0)
                                          GCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCACGCCGAAAAATGAATACCAAGTCT                                                    >  SRR4302541.1283538/1‑94 (MQ=0)
                                          GCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCT                                                    >  SRR4302541.7602423/1‑94 (MQ=0)
                                          GCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCT                                                    >  SRR4302541.719117/1‑94 (MQ=0)
                                          GCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCC                                                    >  SRR4302541.537860/1‑94 (MQ=0)
                                           CAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTC                                                   >  SRR4302541.7841480/1‑94 (MQ=0)
                                           CAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTC                                                   >  SRR4302541.4492038/1‑94 (MQ=0)
                                           CAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTC                                                   >  SRR4302541.3470846/1‑94 (MQ=0)
                                            AACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCCCTCGAGGATGCGGATTCTTACCGTCGCAAGCCAAAAAAGAAATACCAAGTCTCA                                                  >  SRR4302541.1282844/1‑94 (MQ=0)
                                            AACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATGCGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCA                                                  >  SRR4302541.6433701/1‑94 (MQ=0)
                                            AACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCA                                                  >  SRR4302541.7831537/1‑94 (MQ=0)
                                            AACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCA                                                  >  SRR4302541.5705378/1‑94 (MQ=0)
                                            AACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGGTGCAAGACGAAAAATGAACACCCAGTCTCA                                                  >  SRR4302541.6562139/1‑94 (MQ=0)
                                             ACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAA                                                 >  SRR4302541.4326767/1‑94 (MQ=0)
                                              CTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAG                                                >  SRR4302541.1017148/1‑94 (MQ=0)
                                               TGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCACGCCGAAAAATGAATAACAAGTCTCAAGA                                               >  SRR4302541.4075643/1‑94 (MQ=0)
                                               TGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGA                                               >  SRR4302541.2986531/1‑94 (MQ=0)
                                               TGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGA                                               <  SRR4302541.3604359/94‑1 (MQ=0)
                                                GCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAG                                              >  SRR4302541.2984636/1‑94 (MQ=0)
                                                GCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAG                                              <  SRR4302541.6477225/94‑1 (MQ=0)
                                                GCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGACGCAAGACGAAAAATGAATACCAAGTCTCAAGAG                                              >  SRR4302541.2806815/1‑94 (MQ=0)
                                                 CTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGT                                             <  SRR4302541.2666146/94‑1 (MQ=0)
                                                 CTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGT                                             <  SRR4302541.2976535/94‑1 (MQ=0)
                                                  TCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTG                                            >  SRR4302541.4348695/1‑94 (MQ=0)
                                                   CTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGA                                           >  SRR4302541.8180876/1‑94 (MQ=0)
                                                   CTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGA                                           <  SRR4302541.320230/94‑1 (MQ=0)
                                                   CTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGA                                           >  SRR4302541.4705958/1‑94 (MQ=0)
                                                   CTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGA                                           <  SRR4302541.5805149/94‑1 (MQ=0)
                                                       AACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACAC                                       >  SRR4302541.1188122/1‑94 (MQ=0)
                                                       AACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACAC                                       <  SRR4302541.3526438/94‑1 (MQ=0)
                                                       AACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACAC                                       <  SRR4302541.50497/94‑1 (MQ=0)
                                                       AACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATAACAAGTCTCAAGAGTGAACAC                                       >  SRR4302541.5001101/1‑94 (MQ=0)
                                                        ACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACG                                      <  SRR4302541.689041/94‑1 (MQ=0)
                                                         CAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGA                                     >  SRR4302541.1730677/1‑94 (MQ=0)
                                                         CAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGCCTCAAGAGTGAAacagc                                     >  SRR4302541.1265346/1‑89 (MQ=0)
                                                          AATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTA                                    >  SRR4302541.2227333/1‑94 (MQ=0)
                                                           ATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAA                                   >  SRR4302541.7259313/1‑94 (MQ=0)
                                                            TTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGTATACCAAGTCTCAAGAGTGAACACGTAAT                                  <  SRR4302541.5211637/94‑1 (MQ=0)
                                                             TTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATT                                 >  SRR4302541.8259207/1‑94 (MQ=0)
                                                              TATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTC                                >  SRR4302541.1168051/1‑94 (MQ=0)
                                                               ATCAGACAATCTGTGTGGGCACTCGAAGATGCGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCA                               >  SRR4302541.3179762/1‑94 (MQ=0)
                                                               ATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAACAATGAATAACAAGCCTTAAGAGTGAACACGTAATTCT                               >  SRR4302541.2236394/1‑94 (MQ=0)
                                                               ATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCA                               <  SRR4302541.1123714/94‑1 (MQ=0)
                                                               ATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCA                               <  SRR4302541.6857989/94‑1 (MQ=0)
                                                               ATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCA                               >  SRR4302541.5776461/1‑94 (MQ=0)
                                                               ATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCA                               >  SRR4302541.4858909/1‑94 (MQ=0)
                                                                TCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCAT                              <  SRR4302541.4682102/94‑1 (MQ=0)
                                                                TCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCAT                              >  SRR4302541.4766993/1‑94 (MQ=0)
                                                                TCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCAT                              <  SRR4302541.5659889/94‑1 (MQ=0)
                                                                  AGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTA                            >  SRR4302541.5685935/1‑94 (MQ=0)
                                                                  AGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTA                            >  SRR4302541.342466/1‑94 (MQ=0)
                                                                  AGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTA                            >  SRR4302541.2341519/1‑94 (MQ=0)
                                                                  AGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCCCAAGAGTGAACACGTAtttaattc                            >  SRR4302541.3501891/1‑86 (MQ=0)
                                                                   GACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTAC                           <  SRR4302541.872058/94‑1 (MQ=0)
                                                                    ACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAATACGTAATTCATTACG                          <  SRR4302541.4708304/94‑1 (MQ=0)
                                                                    ACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACG                          >  SRR4302541.8915216/1‑94 (MQ=0)
                                                                     CAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGA                         >  SRR4302541.6912201/1‑94 (MQ=0)
                                                                     CAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGA                         <  SRR4302541.2163610/94‑1 (MQ=0)
                                                                     CAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGA                         >  SRR4302541.4938532/1‑94 (MQ=0)
                                                                      AATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAA                        >  SRR4302541.3075061/1‑94 (MQ=0)
                                                                       ATCTGTGTGGGCACTCGAAGATGCGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTATCACGAGTGAACACGTAATTCATTACGAAG                       >  SRR4302541.2050969/1‑94 (MQ=0)
                                                                       ATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAG                       <  SRR4302541.7433434/94‑1 (MQ=0)
                                                                       ATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAG                       <  SRR4302541.2104186/94‑1 (MQ=0)
                                                                       ATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAG                       <  SRR4302541.8552633/94‑1 (MQ=0)
                                                                       ATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAG                       <  SRR4302541.3836823/94‑1 (MQ=0)
                                                                       ATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAG                       <  SRR4302541.1548792/94‑1 (MQ=0)
                                                                       ATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAA                       >  SRR4302541.7389305/1‑94 (MQ=0)
                                                                        TCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGT                      <  SRR4302541.4471597/94‑1 (MQ=0)
                                                                        TCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGT                      <  SRR4302541.524787/94‑1 (MQ=0)
                                                                        TCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGT                      >  SRR4302541.8907215/1‑94 (MQ=0)
                                                                         CTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTTTCAAGAGTGAACACGTAATTCATTACGAAGTT                     >  SRR4302541.6308082/1‑94 (MQ=0)
                                                                         CTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTT                     >  SRR4302541.8398310/1‑94 (MQ=0)
                                                                         CTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTT                     <  SRR4302541.3553744/94‑1 (MQ=0)
                                                                          TGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTT                    <  SRR4302541.2536570/94‑1 (MQ=0)
                                                                          TGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTT                    <  SRR4302541.4580596/94‑1 (MQ=0)
                                                                          TGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTT                    <  SRR4302541.183477/94‑1 (MQ=0)
                                                                            ggtgcGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAA                  <  SRR4302541.7207557/89‑1 (MQ=0)
                                                                             GTGTGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAAT                 <  SRR4302541.3981506/94‑1 (MQ=0)
                                                                             GTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAAT                 <  SRR4302541.3827448/94‑1 (MQ=0)
                                                                              TGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATT                >  SRR4302541.1531036/1‑94 (MQ=0)
                                                                              TGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATT                <  SRR4302541.3517730/94‑1 (MQ=0)
                                                                              TGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATT                >  SRR4302541.8362346/1‑94 (MQ=0)
                                                                               GGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTC               <  SRR4302541.643074/94‑1 (MQ=0)
                                                                               GGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTC               <  SRR4302541.1956913/94‑1 (MQ=0)
                                                                                GGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCT              <  SRR4302541.1117861/94‑1 (MQ=0)
                                                                                GGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCT              >  SRR4302541.2547994/1‑94 (MQ=0)
                                                                                GGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCT              <  SRR4302541.358591/94‑1 (MQ=0)
                                                                                 GCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTT             <  SRR4302541.5887122/94‑1 (MQ=0)
                                                                                  CACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTT            >  SRR4302541.7236548/1‑94 (MQ=0)
                                                                                  CACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTT            <  SRR4302541.5902270/94‑1 (MQ=0)
                                                                                  CACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTT            <  SRR4302541.2287820/94‑1 (MQ=0)
                                                                                   ACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTG           >  SRR4302541.6396447/1‑94 (MQ=0)
                                                                                   ACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTG           >  SRR4302541.7785113/1‑94 (MQ=0)
                                                                                   ACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTG           >  SRR4302541.6000254/1‑94 (MQ=0)
                                                                                   ACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTG           <  SRR4302541.4618884/94‑1 (MQ=0)
                                                                                   ACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTG           <  SRR4302541.3937877/94‑1 (MQ=0)
                                                                                    CTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGA          >  SRR4302541.3515144/1‑94 (MQ=0)
                                                                                     TCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAG         <  SRR4302541.6385531/94‑1 (MQ=0)
                                                                                     TCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAG         <  SRR4302541.8353904/94‑1 (MQ=0)
                                                                                      CGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGC        <  SRR4302541.2558555/94‑1 (MQ=0)
                                                                                      CGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGC        >  SRR4302541.1485581/1‑94 (MQ=0)
                                                                                       GAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCA       <  SRR4302541.543821/94‑1 (MQ=0)
                                                                                        AAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCAT      >  SRR4302541.925586/1‑94 (MQ=0)
                                                                                         AGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCATC     >  SRR4302541.3621654/1‑94 (MQ=0)
                                                                                         AGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCATC     >  SRR4302541.5189083/1‑94 (MQ=0)
                                                                                         AGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCATC     <  SRR4302541.8082798/94‑1 (MQ=0)
                                                                                          GATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCATCA    >  SRR4302541.22549/1‑94 (MQ=0)
                                                                                          GATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCATCA    <  SRR4302541.2203073/94‑1 (MQ=0)
                                                                                           ATGCGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCATCAA   >  SRR4302541.2110211/1‑94 (MQ=0)
                                                                                           ATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCATAAA   >  SRR4302541.1171385/1‑94 (MQ=0)
                                                                                            TACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCATCAAA  <  SRR4302541.781423/94‑1 (MQ=0)
                                                                                             |                                                                                            
GCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCATCAAA  >  NC_000913/4205534‑4205719

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: