Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,237,247 |
+C |
intergenic (+60/‑337) |
ygjT → / → ygjU |
putative transport protein/putative transport protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,237,245 | 1 | . | C | 99.2%
| 404.2
/ ‑3.4
| 120 | intergenic (+58/‑339) | ygjT/ygjU | putative transport protein/putative transport protein |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base C (83/36); total (84/36) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.51e-01 |
Only 100 of 142 total aligned reads displayed.
ATTATCGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCT‑CCTCT‑C‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAACCCTCTCCCCAAACGGGG > NC_000913/3237156‑3237332
|
ttATCGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTctccctct‑c‑cc < 2:4602558/93‑2 (MQ=255)
ttATCGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTctccctct‑c‑cc < 1:3960177/93‑2 (MQ=255)
aTCGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTctccctct‑c‑cctt > 1:1006741/1‑90 (MQ=255)
aTCGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTctccctct‑c‑cctt > 1:1626104/1‑90 (MQ=255)
tCGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTctccctct‑c‑ccttc < 2:298368/93‑5 (MQ=255)
tCGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTctccctct‑c‑ccttc < 2:3570012/93‑5 (MQ=255)
tCGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTctccctct‑c‑ccttc < 2:3628059/93‑5 (MQ=255)
gCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAg > 1:1521396/1‑93 (MQ=255)
gCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAg < 2:5908106/93‑1 (MQ=255)
gCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAg < 1:4214941/93‑1 (MQ=255)
gCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAg > 2:4766934/1‑93 (MQ=255)
gCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAg > 2:4012672/1‑93 (MQ=255)
aTGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAggg > 2:3457148/1‑93 (MQ=255)
aTGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAggg < 2:5668104/93‑1 (MQ=255)
aTGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAggg > 1:3166999/1‑93 (MQ=255)
aTGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAggg > 2:1369306/1‑93 (MQ=255)
tGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCATGga > 2:5693949/1‑93 (MQ=255)
tGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGga > 2:2354666/1‑93 (MQ=255)
tGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGga > 1:6338043/1‑93 (MQ=255)
tGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGga > 2:5472512/1‑93 (MQ=255)
aTAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGgaga < 1:3821788/93‑1 (MQ=255)
tAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGagag < 1:338584/93‑1 (MQ=255)
tAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGagag < 2:1542325/93‑1 (MQ=255)
tAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGagag > 1:1809139/1‑93 (MQ=255)
tAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGagag < 2:2595389/93‑1 (MQ=255)
agcagcGGGGTGGATAATTTTTACTCTGCCTAAGCCGTGTACCCGGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAggg < 2:872577/93‑1 (MQ=255)
agcagcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAggg > 1:3674852/1‑93 (MQ=255)
agcagcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAggg > 1:495063/1‑93 (MQ=255)
gcagcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGt > 1:1709522/1‑93 (MQ=255)
gcagcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGt < 1:835026/93‑1 (MQ=255)
gcagcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGt > 2:2369892/1‑93 (MQ=255)
gcagcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGt < 1:3558374/93‑1 (MQ=255)
cggcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTCCCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTc < 2:2596970/91‑1 (MQ=255)
agcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCg < 2:3600959/93‑1 (MQ=255)
agcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCT‑CACTTCCAGGGAGAGGGTCg > 1:2079567/1‑93 (MQ=255)
gcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCgg > 2:3209272/1‑93 (MQ=255)
gcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCgg < 2:6451086/93‑1 (MQ=255)
gcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCgg > 2:1892770/1‑93 (MQ=255)
gcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCgg > 1:1092385/1‑93 (MQ=255)
gcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCgg < 1:6300006/93‑1 (MQ=255)
gcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCgg > 1:1746843/1‑93 (MQ=255)
cGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCggg < 1:720092/93‑1 (MQ=255)
cGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCggg > 2:4437917/1‑93 (MQ=255)
ggggTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCgggg > 1:4902908/1‑93 (MQ=255)
ggggTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCgggg > 1:4364536/1‑93 (MQ=255)
ggggTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCgggg > 2:3831946/1‑93 (MQ=255)
ggggTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCgggg > 1:2567107/1‑93 (MQ=255)
ggggTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCgggg > 2:4214712/1‑93 (MQ=255)
gggTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGt < 2:506478/93‑1 (MQ=255)
ggTGGATATTTTTTAATCTGCCTAAGCCGTGTCCCCTGTCATTAACATGAGCCCCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTg < 1:4705968/93‑1 (MQ=255)
ggTGGATAATTTTTAATCTGCCTAAGCCGTGTCCCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTg < 1:1408103/93‑1 (MQ=255)
gTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGa > 2:6185531/1‑93 (MQ=255)
gTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGa < 2:3148480/93‑1 (MQ=255)
tgaaTAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAg < 2:3570243/90‑1 (MQ=255)
tGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAg < 1:666071/93‑1 (MQ=255)
ggATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAgg > 1:3237825/1‑93 (MQ=39)
ggATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGGGAgg > 2:924492/1‑93 (MQ=255)
tttttAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAAtt > 2:2639594/1‑93 (MQ=38)
tAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTc > 1:5812203/1‑93 (MQ=38)
tCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCa > 1:509812/1‑93 (MQ=38)
tGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCAcc > 1:6183895/1‑93 (MQ=38)
tGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGCAATTTTTCGCAcc > 2:1918142/1‑93 (MQ=38)
gCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCg > 1:4972935/1‑93 (MQ=38)
ccTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGa > 2:2948496/1‑93 (MQ=37)
cTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGAt > 1:5695922/1‑93 (MQ=38)
tAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATg > 1:1117878/1‑93 (MQ=38)
aaGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGc > 2:2931255/1‑93 (MQ=37)
aGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCt > 2:4527483/1‑93 (MQ=38)
aGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCt > 1:3238521/1‑93 (MQ=38)
aGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGAAATTTTTCGCACCGATGcg > 2:4292247/1‑92 (MQ=38)
aGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGGGAGGGTAATTTTTCGCACCGATGCt > 1:5507222/1‑93 (MQ=38)
aGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGACGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCt > 2:513106/1‑93 (MQ=38)
gCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTg > 1:959827/1‑93 (MQ=38)
gCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTg > 2:4116955/1‑93 (MQ=38)
tgtACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCt > 1:4152894/1‑93 (MQ=37)
gtACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTg > 1:6004925/1‑93 (MQ=37)
tACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑t > 2:4352113/1‑93 (MQ=37)
aCCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑tt > 2:2279925/1‑93 (MQ=37)
cccTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTc > 2:3114435/1‑93 (MQ=37)
cccTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTc > 1:3725374/1‑93 (MQ=37)
cccTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTc > 1:5654136/1‑93 (MQ=37)
cccTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTc > 2:4804220/1‑93 (MQ=38)
cccTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGAGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTc > 1:5747398/1‑93 (MQ=37)
tGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTcccc > 1:6319542/1‑93 (MQ=37)
gTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCt > 2:1759268/1‑93 (MQ=37)
tCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTcccccc > 1:3984480/1‑91 (MQ=25)
ttAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTTAcc > 2:1913268/1‑93 (MQ=21)
aTGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAAc > 2:906692/1‑93 (MQ=21)
gAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGGGTGTCGGGTTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAAccc < 1:6062909/93‑1 (MQ=18)
gAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCtcaccctcaccc > 2:6182086/1‑93 (MQ=21)
aCCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAACCCtctc > 2:6074433/1‑93 (MQ=18)
ccGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCCCCCCCCAACCCTCTcc > 2:6073646/1‑93 (MQ=18)
gTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAACCCTCTcccc > 2:1105308/1‑93 (MQ=18)
ttttCTCCCTCTCC‑CTTCCAGGGAGAGGGACGGGGAGAGGGAAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAACCCTCTCCCCa > 1:1652487/1‑93 (MQ=17)
tccctctcc‑cTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCCAACCCCCCTCCCAAAccg > 2:4983222/3‑91 (MQ=18)
ccctctcc‑cTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTTCCCCCCCCCCCCACCCCTCCCCCAAACgg > 2:1377633/2‑93 (MQ=18)
ccctctcc‑cTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAACCCTCTCCCCAAACggg > 1:6462883/2‑93 (MQ=255)
cctctcc‑cTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAACCCTCTCCCCCAACgggg > 2:5305870/1‑93 (MQ=255)
cctctcc‑cTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAACCCTCTCCCCCAACgggg > 2:726910/1‑93 (MQ=255)
cctctcc‑cTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAACCCTCTCCCCAAACgggg > 1:5326329/1‑93 (MQ=255)
|
ATTATCGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCT‑CCTCT‑C‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAACCCTCTCCCCAAACGGGG > NC_000913/3237156‑3237332
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCT‑CCTCT‑C‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCT‑CCCCAAACGGGGCG > NC_000913/3237161‑3237334
|
CGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCA < SRR4302534.4739798/94‑1 (MQ=60)
GGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAG > SRR4302534.1561340/1‑94 (MQ=60)
GCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGG < SRR4302534.4328623/94‑1 (MQ=60)
GCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGG < SRR4302534.5528890/94‑1 (MQ=60)
GCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGG < SRR4302534.6058574/94‑1 (MQ=60)
CATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGG > SRR4302534.3250526/1‑94 (MQ=60)
ATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGA > SRR4302534.6509248/1‑94 (MQ=60)
ATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAG > SRR4302534.1856111/1‑94 (MQ=60)
ATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAG < SRR4302534.3924457/94‑1 (MQ=60)
TAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGG > SRR4302534.5870290/1‑94 (MQ=60)
TAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGG < SRR4302534.642493/94‑1 (MQ=60)
TAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGG < SRR4302534.1657457/94‑1 (MQ=60)
TAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGG < SRR4302534.347249/94‑1 (MQ=60)
AAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGG > SRR4302534.507417/1‑94 (MQ=60)
AAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGG > SRR4302534.3773635/1‑94 (MQ=60)
AGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGT > SRR4302534.1753942/1‑94 (MQ=60)
AGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGA > SRR4302534.6652155/1‑94 (MQ=60)
GCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTC < SRR4302534.856048/94‑1 (MQ=60)
GCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTC < SRR4302534.3654113/94‑1 (MQ=60)
GCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTC < SRR4302534.4091154/94‑1 (MQ=60)
ACAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTC < SRR4302534.5053326/94‑1 (MQ=60)
CAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCT‑CACTTCCAGGGAGAGGGTCG > SRR4302534.2134028/1‑94 (MQ=60)
AGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGG > SRR4302534.1120801/1‑94 (MQ=60)
AGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGG > SRR4302534.1792176/1‑94 (MQ=60)
GCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGG < SRR4302534.6470383/94‑1 (MQ=60)
CGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGG > SRR4302534.2635123/1‑94 (MQ=60)
CGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGG < SRR4302534.737857/94‑1 (MQ=60)
CGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGG > SRR4302534.5035834/1‑94 (MQ=60)
CGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGG > SRR4302534.4482215/1‑94 (MQ=60)
CGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGG < SRR4302534.2109805/94‑1 (MQ=60)
GGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGT < SRR4302534.1766823/94‑1 (MQ=60)
GGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGG > SRR4302534.5148006/1‑94 (MQ=60)
GGTGGATATTTTTTAATCTGCCTAAGCCGTGTCCCCTGTCATTAACATGAGCCCCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGA < SRR4302534.4833717/94‑1 (MQ=60)
GGTGGATAATTTTTAATCTGCCTAAGCCGTGTCCCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGA < SRR4302534.1445143/94‑1 (MQ=60)
GGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGG > SRR4302534.3433287/1‑94 (MQ=60)
TGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGG > SRR4302534.3323961/1‑94 (MQ=60)
TGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGG < SRR4302534.682288/94‑1 (MQ=60)
GGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGG > SRR4302534.4021355/1‑94 (MQ=60)
AATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAAT > SRR4302534.647553/1‑94 (MQ=60)
TTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTC > SRR4302534.5969956/1‑94 (MQ=60)
ATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCA > SRR4302534.522509/1‑94 (MQ=60)
CTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACC > SRR4302534.6352204/1‑94 (MQ=60)
TGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCG > SRR4302534.5107558/1‑94 (MQ=60)
GCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGA > SRR4302534.1181982/1‑94 (MQ=60)
CCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGAT > SRR4302534.5850223/1‑94 (MQ=60)
CTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATG > SRR4302534.1147076/1‑94 (MQ=60)
TAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGC > SRR4302534.4350200/1‑94 (MQ=60)
AAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCT > SRR4302534.3324678/1‑94 (MQ=60)
AAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGGGAGGGTAATTTTTCGCACCGATGCT > SRR4302534.5655762/1‑94 (MQ=60)
AGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTG > SRR4302534.984278/1‑94 (MQ=60)
GTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCT > SRR4302534.4265004/1‑94 (MQ=60)
GTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCT > SRR4302534.2121639/1‑94 (MQ=60)
TGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG > SRR4302534.6168051/1‑94 (MQ=60)
ACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTC > SRR4302534.5807188/1‑94 (MQ=60)
ACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTC > SRR4302534.3825511/1‑94 (MQ=60)
ACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGAGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTC > SRR4302534.5903234/1‑94 (MQ=60)
CCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTTCC > SRR4302534.3760759/1‑94 (MQ=60)
CTGTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCC > SRR4302534.6490318/1‑94 (MQ=60)
GTCATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCCC > SRR4302534.4091105/1‑94 (MQ=60)
ATTAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGGGAGGGTAATTTTTCGCACCGATGCTGGCCTGgtccacccccc > SRR4302534.3505907/1‑83 (MQ=60)
TAACATGAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCtcactcccc > SRR4302534.5106950/1‑85 (MQ=60)
GAGCACCGTTTTCTCCCTCTCC‑CTTCCAGGGAGGGTGTCGGGTTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCT < SRR4302534.6227763/94‑1 (MQ=60)
CGTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGGGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTttcctcacccccctcccatcccc > SRR4302534.197531/1‑71 (MQ=60)
GTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCT‑CCCCA > SRR4302534.869469/1‑94 (MQ=60)
GTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGGAATTTTTCGCACCGATGCTGGCCTGTTttcctccccccccccccccccccc > SRR4302534.2370354/1‑70 (MQ=60)
GTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGTCGGGGGGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTttcccccccccccccccccccccc > SRR4302534.122819/1‑70 (MQ=60)
GTTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGACGGGGAGAGGGAAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCT‑CCCCA > SRR4302534.1695554/1‑94 (MQ=60)
TTTTCTCCCTCTCC‑CTTCCAGGGAGAGGGGCGGGGGGAGGGGAATTTTTCGCACCGATGCTGGCCTcctgctcctgacaccagacctgtgccca > SRR4302534.1425027/1‑66 (MQ=41)
ttctccctctcC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCT‑CCCCCAAC > SRR4302534.3193216/12‑94 (MQ=60)
tctcccgctcC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCT‑CCCCAAACG > SRR4302534.4299579/11‑94 (MQ=60)
ctccctctcC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTttccccccccccccccccctcccccacac > SRR4302534.5622295/10‑65 (MQ=60)
tccctctcC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCT‑CCCCAAACGGG > SRR4302534.6636954/9‑94 (MQ=60)
tccctctcC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCCAACCCcccctcccaaccgg > SRR4302534.5069070/9‑80 (MQ=60)
ccctctcC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCcccgcccccccctccccccccaacgcg > SRR4302534.550053/8‑67 (MQ=60)
ccctctcC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCT‑CCCCAAACGGGG > SRR4302534.5469994/8‑94 (MQ=60)
CCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTttcctcccccccccccccccccccccccccgc > SRR4302534.2320148/1‑62 (MQ=60)
CCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTTCCCTCcccccccccccccccccccaccacgc > SRR4302534.1326037/1‑68 (MQ=60)
CCTCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCT‑CCCCAAACGGGGC > SRR4302534.1082212/1‑94 (MQ=60)
TCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTttcctccccccccacccccccccccaccccgggg > SRR4302534.1165335/1‑60 (MQ=60)
TCTCC‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTTCCCCTACCCCCACCCTCTCCCCCAAACGGGGGG > SRR4302534.6178417/1‑94 (MQ=60)
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CGGCATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCT‑CCTCT‑C‑CTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCT‑CCCCAAACGGGGCG > NC_000913/3237161‑3237334
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
