Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 884 257.2 12958910 96.9% 12557183 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,250,165 C→T R74R (CGC→CGT yhaH → putative cytochrome

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,250,1650CT99.3% 516.7 / NA 135R74R (CGC→CGTyhaHputative cytochrome
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base T (46/88);  minor base G (1/0);  total (47/88)
Fisher's exact test for biased strand distribution p-value = 3.48e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 144 total aligned reads displayed.

AGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGCCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTATCATCGTCTTTAACTGCCA  >  NC_000913/3250075‑3250254
                                                                                          |                                                                                         
aGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCt                                                                                         <  1:4395113/93‑1 (MQ=255)
 ggCTGGCAACGCGCTGGTGGCTAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTg                                                                                        <  2:1145740/93‑1 (MQ=255)
       cAACGCGCTGGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGac                                                                                  <  2:1847101/93‑1 (MQ=255)
       cAACGCGCTGGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGac                                                                                  <  2:5553472/93‑1 (MQ=255)
         aCGCGCTGGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGacac                                                                                <  2:3630394/93‑1 (MQ=255)
           gcgcTGGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACaccg                                                                              >  2:3961601/1‑93 (MQ=255)
             gcTGGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACaccgac                                                                            <  2:937774/93‑1 (MQ=255)
             gcTGGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACaccgac                                                                            <  1:6257778/93‑1 (MQ=255)
              cTGGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACaccgacc                                                                           >  2:5902581/1‑93 (MQ=255)
               tgttggCGAATGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACaccgaccg                                                                          <  1:3510801/90‑1 (MQ=255)
               tggtggCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACaccgaccg                                                                          >  2:4744265/1‑93 (MQ=255)
                ggtggCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGCTCAGTTCCGCCGTCTGCACGACACCGACCGc                                                                         >  2:1016696/1‑93 (MQ=255)
                 gtggCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCt                                                                        >  1:3590684/1‑93 (MQ=255)
                   ggCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCg                                                                      <  2:6075988/93‑1 (MQ=255)
                      gAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCg                                                                   <  1:2232108/93‑1 (MQ=255)
                      gAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCg                                                                   >  1:246236/1‑93 (MQ=255)
                      gAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCg                                                                   >  2:5703717/1‑93 (MQ=255)
                       gaGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCgt                                                                  <  1:1081200/92‑1 (MQ=255)
                       aaGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCgt                                                                  >  2:5130400/1‑93 (MQ=255)
                       aaGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCgt                                                                  >  2:4910048/1‑93 (MQ=255)
                        aGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCgtg                                                                 >  2:433388/1‑93 (MQ=255)
                        aGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCgtg                                                                 >  2:6375409/1‑93 (MQ=255)
                        aGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCgtg                                                                 <  2:2888651/93‑1 (MQ=255)
                        aGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCgtg                                                                 >  1:1601556/1‑93 (MQ=255)
                         ggCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCgtgg                                                                <  1:3309636/93‑1 (MQ=255)
                         ggCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCgtgg                                                                >  2:5447194/1‑93 (MQ=255)
                          gCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCgtggt                                                               <  2:3128647/93‑1 (MQ=255)
                          gCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCgtggt                                                               <  1:4548227/93‑1 (MQ=255)
                          gCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCgtggt                                                               <  1:842932/93‑1 (MQ=255)
                           cATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCgtggtg                                                              <  2:1116197/93‑1 (MQ=255)
                           cATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCgtggtg                                                              <  1:1891873/93‑1 (MQ=255)
                            aTCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGtggtgg                                                             <  1:5640926/93‑1 (MQ=255)
                            aTCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGtggtgg                                                             >  1:43133/1‑93 (MQ=255)
                            aTCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGtggtgg                                                             <  1:848513/93‑1 (MQ=255)
                            aTCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGtggtgg                                                             <  1:2640239/93‑1 (MQ=255)
                             tCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTggg                                                            >  2:2605642/1‑93 (MQ=255)
                             tCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTggg                                                            <  2:3800058/93‑1 (MQ=255)
                              ccTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGc                                                           <  1:4638824/93‑1 (MQ=255)
                                tGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCAc                                                         <  1:4474151/93‑1 (MQ=255)
                                tGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCAc                                                         <  2:5113291/93‑1 (MQ=255)
                                 gacgacAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCAcc                                                        <  1:1073595/93‑2 (MQ=255)
                                  acgacAATCTACGGTATTCTGGCGTTTTTACCGTGGTGGGCGGTGCAGTTCCGCCGGCTGCACGACACCGACCGCGCGGCGTGGTGGGCACTg                                                       >  1:6472520/1‑93 (MQ=255)
                                   cgacAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGc                                                      <  2:2304593/93‑1 (MQ=255)
                                   cgacAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGc                                                      <  2:1874166/93‑1 (MQ=255)
                                   cgacAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCGGCACGACACCGACCGCTCGGCGTGGTGGGCACTGc                                                      <  1:5322485/93‑1 (MQ=255)
                                    gacAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGCCACCGACCGCTCGGCGTGGGGGGCACTGCt                                                     >  2:3547138/1‑93 (MQ=255)
                                    gacAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCt                                                     >  2:648478/1‑93 (MQ=255)
                                     acAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTa                                                    >  1:1073551/1‑93 (MQ=255)
                                     acAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTa                                                    >  1:1169029/1‑93 (MQ=255)
                                     acAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTa                                                    <  1:1922879/93‑1 (MQ=255)
                                      cAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTAt                                                   >  2:5313745/1‑93 (MQ=255)
                                       aaTCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTAtt                                                  >  2:6424101/1‑93 (MQ=255)
                                       aaTCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTAtt                                                  <  2:4116149/93‑1 (MQ=255)
                                        aTCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTc                                                 <  1:6468569/93‑1 (MQ=255)
                                        aTCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTc                                                 <  1:3934852/93‑1 (MQ=255)
                                         tCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCt                                                <  2:2153041/93‑1 (MQ=255)
                                           tACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTa                                              >  1:2090738/1‑93 (MQ=255)
                                             cGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAAt                                            >  2:1355984/1‑93 (MQ=255)
                                              ggTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATc                                           <  1:4489307/93‑1 (MQ=255)
                                              ggTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATc                                           <  2:2839731/93‑1 (MQ=255)
                                                tATTCTGGTGTTTTTACCGTGGTGGTCGTTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATccc                                         <  1:4948702/93‑1 (MQ=255)
                                                   tCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGtt                                      <  2:3819179/93‑1 (MQ=255)
                                                   tCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGtt                                      <  1:4377064/93‑1 (MQ=255)
                                                      ggTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTAt                                   <  1:353857/93‑1 (MQ=255)
                                                       gtgtTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATc                                  <  1:356770/93‑1 (MQ=255)
                                                       gtgtTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATc                                  <  2:5973251/93‑1 (MQ=255)
                                                        tgtTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCg                                 <  2:4213590/93‑1 (MQ=255)
                                                         gtTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCgg                                <  1:117078/93‑1 (MQ=255)
                                                          tttttACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCggc                               <  2:2670821/93‑1 (MQ=255)
                                                          tttttACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCggc                               >  1:5467468/1‑93 (MQ=255)
                                                           ttttACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCggct                              <  1:545966/93‑1 (MQ=255)
                                                           ttttACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCggct                              <  2:2481238/93‑1 (MQ=255)
                                                            tttACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCggctg                             >  2:6288563/1‑93 (MQ=255)
                                                               tccGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCggctggct                          <  2:2255698/92‑1 (MQ=255)
                                                               aCCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCggctggct                          <  1:2038957/93‑1 (MQ=255)
                                                               aCCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCggctggct                          >  1:5132228/1‑93 (MQ=255)
                                                                 cGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGGttt                        >  1:1808481/1‑92 (MQ=255)
                                                                 cGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCtta                        <  1:5985026/93‑1 (MQ=255)
                                                                   tggtggGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCttatt                      <  2:2118473/93‑1 (MQ=255)
                                                                   tggtggGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCttatt                      <  2:6324336/93‑1 (MQ=255)
                                                                   tggtggGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCttatt                      <  2:4708158/93‑1 (MQ=255)
                                                                    ggtggGCGGTTCAGTTCCGCCGTCTGCACGCCACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCttatta                     <  1:4254278/93‑1 (MQ=255)
                                                                    ggtggGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCttatta                     <  1:769651/93‑1 (MQ=255)
                                                                    ggtggGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCttatta                     <  1:5864560/93‑1 (MQ=255)
                                                                    ggtggGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCttatta                     <  1:2013055/93‑1 (MQ=255)
                                                                     gtggGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTtattat                    <  2:3241480/93‑1 (MQ=255)
                                                                      tggGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTatc                   <  2:1390091/93‑1 (MQ=255)
                                                                      ggggCGGTCCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTatc                   <  1:397032/92‑1 (MQ=255)
                                                                       gggCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGGTTATTatca                  >  1:5717769/1‑93 (MQ=255)
                                                                        ggCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTatcat                 <  2:5670858/93‑1 (MQ=255)
                                                                            gTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTATCATCGTc             >  2:1768652/1‑93 (MQ=255)
                                                                             ttCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTATCATCGTCt            <  2:504748/93‑1 (MQ=255)
                                                                              tCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTATCATCGTCtt           <  1:4911155/93‑1 (MQ=255)
                                                                              tCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTATCATCGTCtt           >  2:4830082/1‑93 (MQ=255)
                                                                                aGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTATCATCGTCTTTa         >  2:5364440/1‑93 (MQ=255)
                                                                                  ttCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTATCATCGTtttttat       >  2:4343115/1‑90 (MQ=255)
                                                                                  tcccgccgTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTATCATCGTCTTTAAc       <  2:2436884/91‑1 (MQ=255)
                                                                                   tCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTATCATCGTCTTTAACt      <  1:2141919/93‑1 (MQ=255)
                                                                                     cgccgtCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTATCATCGTCTTTAACTGc    <  2:3084340/93‑1 (MQ=255)
                                                                                      gccgtcTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTATCATCGTCTTTAACTGcc   <  2:2663392/93‑1 (MQ=255)
                                                                                          |                                                                                         
AGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGCCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTATCATCGTCTTTAACTGCCA  >  NC_000913/3250075‑3250254

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGCCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTATCATCGTCTTTAACTGCCAGGCG  >  NC_000913/3250072‑3250258
                                                                                             |                                                                                             
GTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGT                                                                                               <  SRR4302534.787384/94‑1 (MQ=60)
 TTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTC                                                                                              >  SRR4302534.4961905/1‑94 (MQ=60)
   AGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTG                                                                                            <  SRR4302534.4513659/94‑1 (MQ=60)
     GCTGGCAACGCGCTGGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCA                                                                                          >  SRR4302534.1460050/1‑94 (MQ=60)
                GCTGGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACC                                                                               <  SRR4302534.5054953/94‑1 (MQ=60)
                GCTGGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACC                                                                               <  SRR4302534.6427353/94‑1 (MQ=60)
                GCTGGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACC                                                                               >  SRR4302534.4489275/1‑94 (MQ=60)
                  TGTTGGCGAATGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGC                                                                             <  SRR4302534.3605249/94‑1 (MQ=60)
                  TGGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGC                                                                             >  SRR4302534.2066886/1‑94 (MQ=60)
                   GGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCT                                                                            >  SRR4302534.3687259/1‑94 (MQ=60)
                   GGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCT                                                                            >  SRR4302534.1142882/1‑94 (MQ=60)
                    GTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTATTTACCGTGGTGGAAGGTCCAGTTCCGCCGTCTGCACGACACCGACCGCTT                                                                           <  SRR4302534.3761994/94‑1 (MQ=60)
                        CGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCG                                                                       >  SRR4302534.188321/1‑94 (MQ=60)
                        CGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCG                                                                       >  SRR4302534.252675/1‑94 (MQ=60)
                         GAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGT                                                                      <  SRR4302534.2291229/94‑1 (MQ=60)
                          GAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTG                                                                     <  SRR4302534.1109307/94‑1 (MQ=60)
                          AAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTG                                                                     >  SRR4302534.1643399/1‑94 (MQ=60)
                            GGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGT                                                                   <  SRR4302534.3398023/94‑1 (MQ=60)
                             GCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTG                                                                  <  SRR4302534.864174/94‑1 (MQ=60)
                             GCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTG                                                                  <  SRR4302534.4671530/94‑1 (MQ=60)
                              CATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGG                                                                 >  SRR4302534.44285/1‑94 (MQ=60)
                              CATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGG                                                                 <  SRR4302534.1941217/94‑1 (MQ=60)
                               ATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGG                                                                <  SRR4302534.869900/94‑1 (MQ=60)
                               ATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGG                                                                <  SRR4302534.2710069/94‑1 (MQ=60)
                               ATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGG                                                                <  SRR4302534.5793606/94‑1 (MQ=60)
                                 CCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCA                                                              <  SRR4302534.4764699/94‑1 (MQ=60)
                                  CTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCAC                                                             <  SRR4302534.3878708/94‑1 (MQ=60)
                                   TGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACT                                                            <  SRR4302534.4595182/94‑1 (MQ=60)
                                   TGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACT                                                            >  SRR4302534.4694376/1‑94 (MQ=60)
                                    GACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACCG                                                           <  SRR4302534.1101454/94‑1 (MQ=60)
                                    GACGACAATCTACGGTATTCTGGCGTTTTTACCGTGGTGGGCGGTGCAGTTCCGCCGGCTGCACGACACCGACCGCGCGGCGTGGTGGGCACTG                                                           >  SRR4302534.6646871/1‑94 (MQ=60)
                                      CGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCGGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCT                                                         <  SRR4302534.5466037/94‑1 (MQ=60)
                                       GACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTA                                                        >  SRR4302534.1101408/1‑94 (MQ=60)
                                       GACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTA                                                        >  SRR4302534.1199734/1‑94 (MQ=60)
                                        ACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTAT                                                       <  SRR4302534.1973148/94‑1 (MQ=60)
                                           ATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCT                                                    <  SRR4302534.4040250/94‑1 (MQ=60)
                                           ATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCT                                                    <  SRR4302534.6642799/94‑1 (MQ=60)
                                             CTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTA                                                  >  SRR4302534.2145560/1‑94 (MQ=60)
                                                 GGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCC                                              <  SRR4302534.4610787/94‑1 (MQ=60)
                                                   TATTCTGGTGTTTTTACCGTGGTGGTCGTTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCG                                            <  SRR4302534.5082745/94‑1 (MQ=60)
                                                     TTCTGGTGTTTTTACGGTGGTGGGGTGTTCAGTGCCGCTGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTT                                          <  SRR4302534.3168106/94‑1 (MQ=60)
                                                      TCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTT                                         <  SRR4302534.4495043/94‑1 (MQ=60)
                                                       CTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTA                                        >  SRR4302534.5558993/1‑94 (MQ=60)
                                                        TGGTGTTTTTCCCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTAT                                       <  SRR4302534.2166906/94‑1 (MQ=60)
                                                         GGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATC                                      <  SRR4302534.362914/94‑1 (MQ=60)
                                                          GTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCG                                     <  SRR4302534.365897/94‑1 (MQ=60)
                                                            GTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGC                                   <  SRR4302534.120193/94‑1 (MQ=60)
                                                            GTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGC                                   >  SRR4302534.5614843/1‑94 (MQ=60)
                                                             TTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCT                                  <  SRR4302534.866618/94‑1 (MQ=60)
                                                              TTTTACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTG                                 <  SRR4302534.559448/94‑1 (MQ=60)
                                                                 TACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCT                              >  SRR4302534.5270778/1‑94 (MQ=60)
                                                                  ACCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTT                             <  SRR4302534.2092266/94‑1 (MQ=60)
                                                                   CCGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGgttt                            >  SRR4302534.1855435/1‑90 (MQ=60)
                                                                    CGTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTAT                           <  SRR4302534.6147608/94‑1 (MQ=60)
                                                                     GTGGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATT                          >  SRR4302534.4095144/1‑94 (MQ=60)
                                                                       GGTGGGCGGTTCAGTTCCGCCGTCTGCACGCCACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTAT                        <  SRR4302534.4369080/94‑1 (MQ=60)
                                                                       GGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTAT                        <  SRR4302534.788792/94‑1 (MQ=60)
                                                                       GGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTAT                        <  SRR4302534.2065725/94‑1 (MQ=60)
                                                                       GGTGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTAT                        <  SRR4302534.6023799/94‑1 (MQ=60)
                                                                         TGGGCGGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGGTTATTATCA                      >  SRR4302534.5872680/1‑94 (MQ=60)
                                                                         GGGGCGGTCCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTATCA                      <  SRR4302534.407187/94‑1 (MQ=60)
                                                                            GCGGTTCAGTCCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTATCATCG                   <  SRR4302534.6005631/94‑1 (MQ=60)
                                                                              GGTTCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGgtttttattatcgtt                 >  SRR4302534.4610394/1‑79 (MQ=60)
                                                                                 TCAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTATCATCGTCTTT              <  SRR4302534.5044257/94‑1 (MQ=60)
                                                                                  CAGTTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTATCATCGTCTTTA             <  SRR4302534.676197/94‑1 (MQ=60)
                                                                                     TTCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTATCATCGTCTTTAACT          <  SRR4302534.6319684/94‑1 (MQ=60)
                                                                                      TCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTATCATCGTCTTTAACTG         <  SRR4302534.5671340/94‑1 (MQ=60)
                                                                                      TCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTATCATCGTCTTTAACTG         <  SRR4302534.2398808/94‑1 (MQ=60)
                                                                                      TCCGCCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTATCATCGTCTTTAACTG         <  SRR4302534.2198411/94‑1 (MQ=60)
                                                                                          CCGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTATCATCGTCTTTAACTGCCAG     <  SRR4302534.3662513/94‑1 (MQ=60)
                                                                                           CGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTATCATCGTCTTTTACTGCCACG    >  SRR4302534.409498/1‑94 (MQ=60)
                                                                                           CGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTATCATCGTCTTTAACTGCCCGG    >  SRR4302534.6017788/1‑94 (MQ=60)
                                                                                           CGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTATCATCGTCTTTAACTGCCAGG    <  SRR4302534.4127772/94‑1 (MQ=60)
                                                                                           CGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTATCATCGTCTTTAACTGCCAGG    <  SRR4302534.1024367/94‑1 (MQ=60)
                                                                                           CGTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTATCATCGTCTTTAACTGCCAGG    <  SRR4302534.2549637/94‑1 (MQ=60)
                                                                                            GTCTGCACGCCACCGACCGCTCGGCGTGGTGGTCACTGCTATTCTTAATCCCGTTTATCGGCTCGCTTATTATCATCGTCTTTAACTGCCAGGC   <  SRR4302534.5225072/94‑1 (MQ=60)
                                                                                            GTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTATCATCGTCTTTAACTGCCAGGC   <  SRR4302534.2323644/94‑1 (MQ=60)
                                                                                            GTCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTATCATCGTCTTTAACTGCCAGGC   <  SRR4302534.933288/94‑1 (MQ=60)
                                                                                             TCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTATCATCGTCTTTAACTGCCAGGCG  <  SRR4302534.384642/94‑1 (MQ=60)
                                                                                             |                                                                                             
GTTAGGCTGGCAACGCGCTGGTGGCGAAGGCATCCTGACGACAATCTACGGTATTCTGGTGTTTTTACCGTGGTGGGCGGTTCAGTTCCGCCGCCTGCACGACACCGACCGCTCGGCGTGGTGGGCACTGCTATTCTTAATCCCGTTTATCGGCTGGCTTATTATCATCGTCTTTAACTGCCAGGCG  >  NC_000913/3250072‑3250258

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: