Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,418,840 |
+G |
coding (1070/1089 nt) |
b3269 → |
putative transport system permease protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,418,837 | 1 | . | G | 98.5%
| 689.1
/ 1.5
| 201 | coding (1067/1089 nt) | b3269 | putative transport system permease protein |
| Reads supporting (aligned to +/- strand): ref base . (0/3); new base G (93/105); total (93/108) |
| Fisher's exact test for biased strand distribution p-value = 2.50e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 234 total aligned reads displayed.
GTATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAA > NC_000913/3418745‑3418923
|
tATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑g < 2:1702281/93‑1 (MQ=255)
aTCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑gg > 1:5895808/1‑93 (MQ=255)
aTCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑gg < 2:2427217/93‑1 (MQ=255)
tctcAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑ggg > 1:1426152/1‑93 (MQ=255)
tctcAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑ggg > 1:831236/1‑93 (MQ=255)
tctcAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑ggg < 1:6194474/93‑1 (MQ=255)
tcAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑ggggc > 1:2130509/1‑91 (MQ=255)
tcAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑ggggc < 1:4589782/93‑3 (MQ=255)
cAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑ggggca < 2:466008/93‑4 (MQ=255)
aaCATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑ggggcaa < 1:4033660/93‑5 (MQ=255)
aaCATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑ggggcaa < 1:5866890/93‑5 (MQ=255)
aTCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGcc > 1:1319086/1‑93 (MQ=255)
aTCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGcc > 2:2222152/1‑93 (MQ=255)
cGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCAt < 1:1509371/93‑1 (MQ=255)
tCAAAACCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCg < 2:6326179/93‑1 (MQ=255)
tCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCg > 1:6116149/1‑93 (MQ=255)
tCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCg < 2:506379/93‑1 (MQ=255)
tCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCg < 2:3897686/93‑1 (MQ=255)
aaaaaCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCgag < 2:4887376/93‑1 (MQ=255)
aaaaCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCgaga > 1:3112148/1‑93 (MQ=255)
aaaCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGAc < 1:1385250/93‑1 (MQ=255)
aaaCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGAc > 1:3346476/1‑93 (MQ=255)
aaCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACg > 1:4209029/1‑93 (MQ=255)
aCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCCAGAcca > 1:1207296/1‑91 (MQ=255)
ctcctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGAt < 1:4100178/93‑1 (MQ=255)
ctcctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGAt > 2:4169077/1‑93 (MQ=255)
tcctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATa > 1:1017585/1‑93 (MQ=255)
tcctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTGCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATa < 2:2658309/93‑1 (MQ=255)
tcctcTCTTGCCGCCGCTATTGGCTATACCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATa > 1:2199633/1‑93 (MQ=255)
cctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAg > 2:1654328/1‑93 (MQ=255)
cctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAg > 1:675888/1‑93 (MQ=255)
cctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAg < 2:3915990/93‑1 (MQ=255)
tctctTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGcc > 2:4029463/1‑93 (MQ=255)
tctctTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGcc > 1:4860791/1‑93 (MQ=255)
ctctTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑ATGCCATCGAGACGATAGCCa < 1:6280261/93‑1 (MQ=255)
tctTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCAt > 1:4583857/1‑93 (MQ=255)
ttGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGa > 2:4802484/1‑93 (MQ=255)
ttGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGa > 2:4968905/1‑93 (MQ=255)
tGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGAc < 1:976891/93‑1 (MQ=255)
tGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGAc < 2:3383953/93‑1 (MQ=255)
gccgccGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGAcc < 1:1642574/93‑1 (MQ=255)
gccgccGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGAcc > 1:2242651/1‑93 (MQ=255)
ccgccgCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCa > 1:3713607/1‑93 (MQ=255)
cgccgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCAt < 1:430088/93‑1 (MQ=255)
cgccgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCAt > 2:3488321/1‑93 (MQ=255)
gccgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATg < 1:5595426/93‑1 (MQ=255)
gccgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATg > 2:5868451/1‑93 (MQ=255)
gccgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATg > 2:6428656/1‑93 (MQ=255)
ccccTATTGCCTATCCCAATATGATTTCGTTGTTTGCCGGCTCCGTGCTGAATCAGAC‑GGGCC‑AAGCCATCGAGACGATAGCCATGCCCATGt < 1:5347302/90‑1 (MQ=255)
cgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTc < 1:5790502/93‑1 (MQ=255)
gcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCg > 1:2045465/1‑93 (MQ=255)
gcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCg < 2:5463896/93‑1 (MQ=255)
cTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCgg > 2:4075659/1‑93 (MQ=255)
cTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCgg < 1:6178159/93‑1 (MQ=255)
cTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCgg < 1:49762/93‑1 (MQ=255)
tATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGt > 2:5254635/1‑93 (MQ=255)
tATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGt > 2:5792004/1‑93 (MQ=255)
ggCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTAt > 2:3873578/1‑93 (MQ=255)
gCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATc < 1:5545536/93‑1 (MQ=255)
cTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCt < 2:752089/93‑1 (MQ=255)
cTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCt < 2:1000949/93‑1 (MQ=255)
tCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAt < 2:502423/93‑1 (MQ=255)
tCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAt > 1:4156013/1‑93 (MQ=255)
tCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAt > 2:5665914/1‑93 (MQ=255)
gATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATc < 1:2508852/93‑1 (MQ=255)
gATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATc > 2:1341587/1‑93 (MQ=255)
gATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATc > 1:2147477/1‑93 (MQ=255)
atatGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCa > 1:4799927/1‑93 (MQ=255)
tatGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAg > 1:4762718/1‑93 (MQ=255)
tGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGcc < 2:557902/93‑1 (MQ=255)
gTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTg < 2:5436202/93‑1 (MQ=255)
gTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTg < 2:6047623/93‑1 (MQ=255)
cTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAtc < 2:3171949/93‑1 (MQ=255)
cTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAtc < 2:6276702/93‑1 (MQ=255)
tGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAtct > 2:3667996/1‑93 (MQ=255)
tGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAtct < 1:1698571/93‑1 (MQ=255)
tGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAtct < 2:1485464/93‑1 (MQ=255)
tttGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCg < 2:1400833/93‑1 (MQ=255)
tGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCgct < 1:2355558/93‑1 (MQ=255)
tGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCgct > 1:4645584/1‑93 (MQ=255)
ccGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCgctgc < 1:1124795/93‑1 (MQ=255)
ccGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCgctgc < 1:3542689/93‑1 (MQ=255)
cGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCgctgct < 1:3228556/93‑1 (MQ=255)
cGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCgctgct < 1:1898483/93‑1 (MQ=255)
ggCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGctgctg < 2:5969009/93‑1 (MQ=255)
gCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCtga > 1:2798344/1‑93 (MQ=255)
gCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCtga < 2:1107080/93‑1 (MQ=255)
gCACCGTGCTGAATCAGAC‑GGGCC‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCtga < 1:5493851/93‑1 (MQ=255)
aCCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCtgatg < 1:2919663/93‑1 (MQ=255)
ccGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCtgatga > 2:6170979/1‑93 (MQ=255)
ccGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCtgatga < 2:1827200/93‑1 (MQ=255)
cGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGaa < 1:6256047/93‑1 (MQ=255)
gTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAat < 2:2264022/93‑1 (MQ=255)
tGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAata < 1:2699735/93‑1 (MQ=255)
gCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAatat > 1:5199767/1‑93 (MQ=255)
tGATTCAGAC‑GGG‑CAAAGCCACCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCt < 1:2458468/93‑1 (MQ=255)
gAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCta < 1:5093352/93‑1 (MQ=255)
gAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCta > 1:3508303/1‑93 (MQ=255)
aTCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCtata > 1:5668911/1‑93 (MQ=255)
aTCAGAC‑GGGCC‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCtata < 1:4483124/93‑1 (MQ=255)
|
GTATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAA > NC_000913/3418745‑3418923
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGCAT > NC_000913/3418747‑3418932
|
ATCTCAACATCGTCAAAACCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGTTGTTTGCCGGCACCGTGCTGAATAAGAC‑GGG < SRR4302534.5953803/94‑1 (MQ=60)
ATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GGG > SRR4302534.852144/1‑94 (MQ=60)
ATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GGG > SRR4302534.4306977/1‑94 (MQ=60)
ATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GGG < SRR4302534.6318528/94‑1 (MQ=60)
ATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GGG > SRR4302534.1463663/1‑94 (MQ=60)
ATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATCGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GGG > SRR4302534.1522423/1‑94 (MQ=60)
TCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GGG‑G < SRR4302534.6363023/94‑1 (MQ=60)
CTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GGGgc > SRR4302534.424639/1‑92 (MQ=60)
CTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GGGgc > SRR4302534.2186639/1‑92 (MQ=60)
TCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GGGgca < SRR4302534.806980/94‑4 (MQ=60)
TCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GGGgca < SRR4302534.6564939/94‑4 (MQ=60)
TCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GGGgca < SRR4302534.4714341/94‑4 (MQ=60)
TCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GGGgca < SRR4302534.143544/94‑4 (MQ=60)
AACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAG < SRR4302534.6026188/94‑1 (MQ=60)
AACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAG < SRR4302534.4141793/94‑1 (MQ=60)
CATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCC > SRR4302534.4149255/1‑94 (MQ=60)
CATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCC < SRR4302534.1686729/94‑1 (MQ=60)
CATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCC > SRR4302534.1353867/1‑94 (MQ=60)
ATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCA > SRR4302534.3515857/1‑94 (MQ=60)
ATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCA > SRR4302534.4568713/1‑94 (MQ=60)
ATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCA > SRR4302534.5998580/1‑94 (MQ=60)
CGTCAAAACCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATC < SRR4302534.3048630/94‑1 (MQ=60)
CGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATC < SRR4302534.1549059/94‑1 (MQ=60)
GTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCG > SRR4302534.6282528/1‑94 (MQ=60)
TCAAAAACTACTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGA < SRR4302534.5296303/94‑1 (MQ=60)
AAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGA > SRR4302534.6269195/1‑94 (MQ=60)
AAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGA > SRR4302534.3193990/1‑94 (MQ=60)
AAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGAC > SRR4302534.3436058/1‑94 (MQ=60)
AAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGAC > SRR4302534.1413062/1‑94 (MQ=60)
AAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGAC < SRR4302534.5724406/94‑1 (MQ=60)
AAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACG < SRR4302534.1421718/94‑1 (MQ=60)
AAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACG > SRR4302534.4322607/1‑94 (MQ=60)
AAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACG > SRR4302534.3221362/1‑94 (MQ=60)
AACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGA > SRR4302534.2207452/1‑94 (MQ=60)
AACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCCAGACCA > SRR4302534.1239064/1‑94 (MQ=60)
CTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATA < SRR4302534.6050689/94‑1 (MQ=60)
CTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATA < SRR4302534.4210421/94‑1 (MQ=60)
CTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATA > SRR4302534.1043783/1‑94 (MQ=60)
CTCCTCTCTTGCCGCCGCTATTGGCTATACCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATA > SRR4302534.2257839/1‑94 (MQ=60)
TCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAG > SRR4302534.4896937/1‑94 (MQ=60)
TCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAG < SRR4302534.4960253/94‑1 (MQ=60)
TCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAG > SRR4302534.692374/1‑94 (MQ=60)
CCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGC > SRR4302534.1771105/1‑94 (MQ=60)
CTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCC > SRR4302534.4992661/1‑94 (MQ=60)
CTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑ATGCCATCGAGACGATAGCCAT < SRR4302534.6450229/94‑1 (MQ=60)
CTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCAT > SRR4302534.4708234/1‑94 (MQ=60)
CTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCAT < SRR4302534.6273465/94‑1 (MQ=60)
CTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCAT > SRR4302534.6433606/1‑94 (MQ=60)
CTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGA > SRR4302534.1019976/1‑94 (MQ=60)
TGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACC < SRR4302534.1001825/94‑1 (MQ=60)
TGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACC > SRR4302534.2302080/1‑94 (MQ=60)
GCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCA < SRR4302534.1685405/94‑1 (MQ=60)
GCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCA > SRR4302534.3813464/1‑94 (MQ=60)
CCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCAT > SRR4302534.3406275/1‑94 (MQ=60)
CCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCAT < SRR4302534.2639550/94‑1 (MQ=60)
CGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATG < SRR4302534.2192905/94‑1 (MQ=60)
CGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATG > SRR4302534.4741357/1‑94 (MQ=60)
CGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATG < SRR4302534.441064/94‑1 (MQ=60)
GCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGT < SRR4302534.5746725/94‑1 (MQ=60)
GCCCCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGT < SRR4302534.4880360/94‑1 (MQ=60)
CCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGT < SRR4302534.4777957/94‑1 (MQ=60)
CCCCTATTGCCTATCCCAATATGATTTCGTTGTTTGCCGGCTCCGTGCTGAATCAGAC‑GGGCC‑AAGCCATCGAGACGATAGCCATGCCCATGTC < SRR4302534.5491479/94‑1 (MQ=60)
CGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCG > SRR4302534.2098931/1‑94 (MQ=60)
CGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCG < SRR4302534.5947597/94‑1 (MQ=60)
CGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCG > SRR4302534.2439880/1‑94 (MQ=60)
CTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGT < SRR4302534.6346286/94‑1 (MQ=60)
CTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGT < SRR4302534.51091/94‑1 (MQ=60)
ATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCT > SRR4302534.1534645/1‑94 (MQ=60)
ATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCT > SRR4302534.1183373/1‑94 (MQ=60)
ATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCT < SRR4302534.1045286/94‑1 (MQ=60)
TTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTA < SRR4302534.6387576/94‑1 (MQ=60)
TTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTA > SRR4302534.2839116/1‑94 (MQ=60)
TGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTAT > SRR4302534.5076481/1‑94 (MQ=60)
GGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATC < SRR4302534.4709981/94‑1 (MQ=60)
GCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCT < SRR4302534.5695230/94‑1 (MQ=60)
CTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTG < SRR4302534.5876252/94‑1 (MQ=60)
TATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGA < SRR4302534.2335568/94‑1 (MQ=60)
ATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAT > SRR4302534.4268227/1‑94 (MQ=60)
TCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATT > SRR4302534.1351047/1‑94 (MQ=60)
CCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTA > SRR4302534.2898698/1‑94 (MQ=60)
CCGATATGGTTGCCCTCGTTGCCGGCACCGTGCTGAATCAGCCGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTAT < SRR4302534.1608644/94‑1 (MQ=60)
CGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATC > SRR4302534.2204147/1‑94 (MQ=60)
CGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATC < SRR4302534.4321756/94‑1 (MQ=60)
GATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCA > SRR4302534.1282752/1‑94 (MQ=60)
GATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCA < SRR4302534.2575472/94‑1 (MQ=60)
GATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCA > SRR4302534.4930264/1‑94 (MQ=60)
GATATGGGTTCGCTGTTTGCGGGCACCGTGCTGAATCATACGGGG‑A‑AACCCATCGAGACGATAGCCATGACCGTGTCGGTCTATCTGATTATCA < SRR4302534.5711137/94‑1 (MQ=60)
ATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAG > SRR4302534.4892036/1‑94 (MQ=60)
ATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCC < SRR4302534.468211/94‑1 (MQ=60)
TGTTTGGCTGTTTGCCGCCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTG < SRR4302534.5358529/94‑1 (MQ=60)
GGTTTCGCTGTTTGCCGGCCCCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTG < SRR4302534.6421170/94‑1 (MQ=60)
TTTCGCTGTTTGCCGGCCCCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGAC < SRR4302534.57895/94‑1 (MQ=60)
TCGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTA < SRR4302534.2261570/94‑1 (MQ=60)
CGCTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAT < SRR4302534.1787828/94‑1 (MQ=60)
CTGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCT < SRR4302534.5057175/94‑1 (MQ=60)
TGTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTC < SRR4302534.1742705/94‑1 (MQ=60)
GTTTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATATGATTATCAGCCTGACTATCTCG > SRR4302534.3514576/1‑94 (MQ=60)
TTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCT > SRR4302534.798785/1‑94 (MQ=60)
TTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCT > SRR4302534.4771692/1‑94 (MQ=60)
TTGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCT > SRR4302534.3643264/1‑94 (MQ=60)
TGCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTG < SRR4302534.2418071/94‑1 (MQ=60)
GCCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGC < SRR4302534.467094/94‑1 (MQ=60)
CCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCT < SRR4302534.3637990/94‑1 (MQ=60)
CCGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCT < SRR4302534.1154197/94‑1 (MQ=60)
CGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTG < SRR4302534.1947989/94‑1 (MQ=60)
CGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTG > SRR4302534.2086535/1‑94 (MQ=60)
CGGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTG < SRR4302534.3314343/94‑1 (MQ=60)
GGCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGA > SRR4302534.2871937/1‑94 (MQ=60)
GCACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGAT < SRR4302534.5470699/94‑1 (MQ=60)
GCACCGTGCTGAATCAGAC‑GGGCC‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGAT < SRR4302534.5641998/94‑1 (MQ=60)
CACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATG > SRR4302534.2558199/1‑94 (MQ=60)
CACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATG < SRR4302534.2604135/94‑1 (MQ=60)
ACCGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGA < SRR4302534.2996276/94‑1 (MQ=60)
CGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAAT > SRR4302534.2203823/1‑94 (MQ=60)
CGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAAT < SRR4302534.6425593/94‑1 (MQ=60)
CGTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAAT < SRR4302534.3611050/94‑1 (MQ=60)
GTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATA > SRR4302534.971873/1‑94 (MQ=60)
GTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATA > SRR4302534.5645142/1‑94 (MQ=60)
GTGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATA < SRR4302534.5566492/94‑1 (MQ=60)
TGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATAT > SRR4302534.5340032/1‑94 (MQ=60)
TGCTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATAT < SRR4302534.2771054/94‑1 (MQ=60)
TGCTGAATCAGAC‑GGGAC‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATAT < SRR4302534.3865188/94‑1 (MQ=60)
CTGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCT > SRR4302534.3094525/1‑94 (MQ=60)
TGATTCAGAC‑GGG‑CAAAGCCACCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTA < SRR4302534.2523783/94‑1 (MQ=60)
TGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTA > SRR4302534.3602680/1‑94 (MQ=60)
TGAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTA < SRR4302534.6355369/94‑1 (MQ=60)
GAATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTAT < SRR4302534.5230839/94‑1 (MQ=60)
AATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATA > SRR4302534.5822397/1‑94 (MQ=60)
ATCAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAA > SRR4302534.4372855/1‑94 (MQ=60)
ATCAGAC‑GGGCC‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAA < SRR4302534.4604415/94‑1 (MQ=60)
CAGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACC > SRR4302534.2215851/1‑94 (MQ=60)
agccgGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCG < SRR4302534.5719251/89‑1 (MQ=60)
AGACGGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCG > SRR4302534.262064/1‑94 (MQ=60)
GACGGGG‑C‑AAGCCATCGAGACCATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAAACGC > SRR4302534.1694775/1‑94 (MQ=60)
acgGGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCC < SRR4302534.779415/91‑1 (MQ=60)
G‑GGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGC < SRR4302534.2483591/94‑1 (MQ=60)
G‑GGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGC < SRR4302534.3943332/94‑1 (MQ=60)
G‑GGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGC < SRR4302534.702989/94‑1 (MQ=60)
G‑GGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGC > SRR4302534.5002289/1‑94 (MQ=60)
GGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGCA > SRR4302534.4857119/1‑94 (MQ=60)
GGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGCA > SRR4302534.3122720/1‑94 (MQ=60)
GGC‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGCA < SRR4302534.4591550/94‑1 (MQ=60)
GG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGCAT > SRR4302534.3071851/1‑94 (MQ=60)
GG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGACGCAT > SRR4302534.3505387/1‑94 (MQ=60)
|
ATCTCAACATCGTCAAAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGAC‑GGG‑C‑AAGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGCAT > NC_000913/3418747‑3418932
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
