Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,446,737 |
T→C |
T24A (ACG→GCG) |
rplP ← |
50S ribosomal subunit protein L16 |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,446,737 | 0 | T | C | 100.0%
| 1069.3
/ NA
| 312 | T24A (ACG→GCG) | rplP | 50S ribosomal subunit protein L16 |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (138/174); total (138/174) |
Only 100 of 319 total aligned reads displayed.
CATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTA > NC_000913/3446648‑3446825
|
cATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCAcc > 2:1813854/1‑93 (MQ=255)
aTAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCAccc < 1:6405371/93‑1 (MQ=255)
tAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCt < 2:3085425/93‑1 (MQ=255)
tAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCt < 1:3140233/93‑1 (MQ=255)
aGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTg < 1:4525377/93‑1 (MQ=255)
gCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTgc < 1:4209043/93‑1 (MQ=255)
gCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTgc > 2:4085781/1‑93 (MQ=255)
acgacgTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTgcgc < 1:2103844/93‑1 (MQ=255)
acgacgTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTgcgc > 1:3043794/1‑93 (MQ=255)
gacgTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCa > 2:2695149/1‑93 (MQ=255)
cgTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGa < 2:220987/93‑1 (MQ=255)
tgctgcTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGAcc > 1:4357028/1‑93 (MQ=255)
ctgctTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACcgc < 2:2055384/93‑1 (MQ=255)
ctgctTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACcgc < 2:4799347/93‑1 (MQ=255)
ctgctTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACcgc < 2:1201882/93‑1 (MQ=255)
ctgctTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACcgc > 2:3845955/1‑93 (MQ=255)
gctTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCgg < 1:1931019/93‑1 (MQ=255)
gctTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCgg < 1:1354820/93‑1 (MQ=255)
ctTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGt < 1:499267/93‑1 (MQ=255)
ctTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGt < 2:3149287/93‑1 (MQ=255)
ctTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGt < 2:4430034/93‑1 (MQ=255)
ttCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGtt < 2:1121104/93‑1 (MQ=255)
ttCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGtt > 1:4607100/1‑93 (MQ=255)
tCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTa < 1:3517972/93‑1 (MQ=255)
tCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTa < 2:6414956/93‑1 (MQ=255)
gATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACg < 2:2896799/93‑1 (MQ=255)
aTCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACgg > 1:5546145/1‑93 (MQ=255)
aTCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACgg > 2:3983582/1‑93 (MQ=255)
aTCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACgg > 1:4911088/1‑93 (MQ=255)
aTCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACgg > 1:1152271/1‑93 (MQ=255)
tGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCt < 1:3901653/93‑1 (MQ=255)
tGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCt < 1:5624188/93‑1 (MQ=255)
tGACAGGCAGGCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCt < 2:3211176/93‑1 (MQ=255)
gACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCtt > 1:3647517/1‑93 (MQ=255)
aCGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCttt < 2:5780518/93‑1 (MQ=255)
aCGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCttt < 2:1472079/93‑1 (MQ=255)
cGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTtg < 2:5256540/93‑1 (MQ=255)
cGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTtg < 2:3381583/93‑1 (MQ=255)
cGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTtg < 1:5989413/93‑1 (MQ=255)
gCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGc > 1:4430992/1‑93 (MQ=255)
aGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCAt < 2:3305259/93‑1 (MQ=255)
gTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCAtt < 1:101252/93‑1 (MQ=255)
gTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCAtt > 1:2196182/1‑93 (MQ=255)
atCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCAtt < 2:4265461/92‑1 (MQ=255)
tCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCAttt < 2:6036281/93‑1 (MQ=255)
tCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCAttt < 1:2516119/93‑1 (MQ=255)
aGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTa > 2:1641546/1‑93 (MQ=255)
aGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTa > 1:4743060/1‑93 (MQ=255)
gacgacCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTAc > 2:2522163/1‑93 (MQ=255)
gacgacCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTAc > 2:5859224/1‑93 (MQ=255)
cgacCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACgg < 1:511287/93‑1 (MQ=255)
acCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGaa < 1:6144300/93‑1 (MQ=255)
cACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAAtt < 1:2690463/93‑1 (MQ=255)
cGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAAtttt < 2:2635969/93‑1 (MQ=255)
cGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAAtttt < 1:1749856/93‑1 (MQ=255)
ccAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTa < 2:5124810/93‑1 (MQ=255)
ccAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTa < 1:4024271/93‑1 (MQ=255)
aaCAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACg > 1:4260593/1‑93 (MQ=255)
aaCAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACg > 2:5367382/1‑93 (MQ=255)
aaCAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACg > 1:3387768/1‑93 (MQ=255)
accgCTTTCAGAGCGAATCTGCCGAAGCTAACATCCGCCCCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGc < 2:2880067/90‑1 (MQ=255)
aCAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGc < 1:2326129/93‑1 (MQ=255)
aCAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGc < 1:249286/93‑1 (MQ=255)
aCAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGc < 1:742588/93‑1 (MQ=255)
aCAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGc < 1:571723/93‑1 (MQ=255)
cAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCt < 2:1404659/93‑1 (MQ=255)
cTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTg > 2:5044754/1‑93 (MQ=255)
tttCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTgg < 2:3060023/93‑1 (MQ=255)
tttCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTgg > 1:803404/1‑93 (MQ=255)
tCAGACGGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTGCGCTTTGGtt < 1:2889578/93‑1 (MQ=255)
tCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGtt < 2:344050/93‑1 (MQ=255)
aGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGt < 2:2279113/93‑1 (MQ=255)
gACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTa > 2:2993778/1‑93 (MQ=255)
gACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTa > 2:3621804/1‑93 (MQ=255)
gAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACAt < 2:1057354/93‑1 (MQ=255)
gAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACAt > 2:1531482/1‑93 (MQ=255)
gAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACAt > 1:5362936/1‑93 (MQ=255)
aaGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATc < 2:1317762/93‑1 (MQ=255)
aaGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATc < 1:5297734/93‑1 (MQ=255)
aGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCa < 2:814247/93‑1 (MQ=255)
aGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCa > 2:1990434/1‑93 (MQ=255)
aGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCa < 1:4795222/93‑1 (MQ=255)
gCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGa > 1:686650/1‑93 (MQ=255)
gCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGa < 1:3240744/93‑1 (MQ=255)
ccGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGAc < 1:1866240/93‑1 (MQ=255)
gAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGc > 2:69617/1‑93 (MQ=255)
gAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGc < 1:856654/93‑1 (MQ=255)
aaGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCt > 2:5537660/1‑93 (MQ=255)
aGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTc > 1:1493939/1‑93 (MQ=255)
gCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTcc < 2:5887696/93‑1 (MQ=255)
aaCATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTa > 2:2397770/1‑93 (MQ=255)
aaCATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTa < 2:4653351/93‑1 (MQ=255)
aaCATCCGCACCCTGCGCCAGACCGCGGTGACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTa < 2:1883060/93‑1 (MQ=255)
aCATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTAt > 1:2448173/1‑93 (MQ=255)
aCATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTAt > 1:2279699/1‑93 (MQ=255)
aCATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTAt > 2:6186353/1‑93 (MQ=255)
cATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTAtt < 1:3713360/93‑1 (MQ=255)
aTCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTGACATCAGCGACGCTCCTTAttt > 2:2709469/1‑93 (MQ=255)
tCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTa < 1:272326/93‑1 (MQ=255)
tCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTa > 1:3851500/1‑93 (MQ=255)
|
CATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTA > NC_000913/3446648‑3446825
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGGTCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCC > NC_000913/3446644‑3446830
|
GGGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGC < SRR4302534.3475534/94‑1 (MQ=60)
GGCCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCA > SRR4302534.4570696/1‑94 (MQ=60)
CCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACC > SRR4302534.1496410/1‑94 (MQ=60)
CCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACC > SRR4302534.5229654/1‑94 (MQ=60)
CATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCC < SRR4302534.4430858/94‑1 (MQ=60)
CATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCC < SRR4302534.4430859/94‑1 (MQ=60)
ATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCT < SRR4302534.6578282/94‑1 (MQ=60)
TAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTG < SRR4302534.3222821/94‑1 (MQ=60)
TAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTG < SRR4302534.1107036/94‑1 (MQ=60)
TAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTG < SRR4302534.2268218/94‑1 (MQ=60)
TAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTG > SRR4302534.5005769/1‑94 (MQ=60)
AGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGC < SRR4302534.4647970/94‑1 (MQ=60)
AGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGC < SRR4302534.4294278/94‑1 (MQ=60)
GCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCG < SRR4302534.4322621/94‑1 (MQ=60)
GCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCG > SRR4302534.1832155/1‑94 (MQ=60)
CACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGC > SRR4302534.3123630/1‑94 (MQ=60)
ACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCC < SRR4302534.2159080/94‑1 (MQ=60)
CGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCA > SRR4302534.2831337/1‑94 (MQ=60)
GACGTGCTGCTTTAATCTGACGGGCAGTCAGACGCCCACGGCCAACAGCTTTCAGCCGGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAG < SRR4302534.5690275/94‑1 (MQ=60)
GACGTGCGGCTTCGATCTGACGGACAGTCCGACGCCCGCGCCCAACATCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCCCCCTGCGCCAG < SRR4302534.6041406/94‑1 (MQ=53)
GTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACC > SRR4302534.4474601/1‑94 (MQ=60)
GTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACC > SRR4302534.4755081/1‑94 (MQ=60)
GTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACC > SRR4302534.6598538/1‑94 (MQ=60)
TGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCG > SRR4302534.5673446/1‑94 (MQ=60)
GCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGC > SRR4302534.772995/1‑94 (MQ=60)
CTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACGCTGCGCCAGACCGCG > SRR4302534.70876/1‑94 (MQ=60)
GCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGT < SRR4302534.1981504/94‑1 (MQ=60)
GCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGT < SRR4302534.1390525/94‑1 (MQ=60)
GCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGT < SRR4302534.5522305/94‑1 (MQ=60)
GCTTCGAGCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGT < SRR4302534.4756700/94‑1 (MQ=60)
GTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTT < SRR4302534.2660136/94‑1 (MQ=60)
CTTCGATCTGACGGGCAGTCAGACGACCACGGGCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACGCTGCGCCAGACCGCGGTT > SRR4302534.4707356/1‑94 (MQ=60)
CTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTT > SRR4302534.4732127/1‑94 (MQ=60)
CTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTT < SRR4302534.2651960/94‑1 (MQ=60)
CTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTT < SRR4302534.511704/94‑1 (MQ=60)
CTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTT < SRR4302534.96742/94‑1 (MQ=60)
CTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTT > SRR4302534.3666478/1‑94 (MQ=60)
TTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTA > SRR4302534.3808565/1‑94 (MQ=60)
TTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTA > SRR4302534.4709514/1‑94 (MQ=60)
TTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTA > SRR4302534.2165808/1‑94 (MQ=60)
TCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTAC < SRR4302534.3612593/94‑1 (MQ=60)
TCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTAC < SRR4302534.6022405/94‑1 (MQ=60)
GATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGG < SRR4302534.796701/94‑1 (MQ=60)
GATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGG < SRR4302534.6405281/94‑1 (MQ=60)
GATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGG > SRR4302534.1182476/1‑94 (MQ=60)
GATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGG > SRR4302534.5044189/1‑94 (MQ=60)
GATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGG > SRR4302534.1928130/1‑94 (MQ=60)
GATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGG > SRR4302534.5695849/1‑94 (MQ=60)
ATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGC < SRR4302534.5195772/94‑1 (MQ=60)
ATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGC < SRR4302534.2296422/94‑1 (MQ=60)
CTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCT > SRR4302534.790428/1‑94 (MQ=60)
TGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTT < SRR4302534.3683406/94‑1 (MQ=60)
TGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTT < SRR4302534.852247/94‑1 (MQ=60)
TGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTT < SRR4302534.4006307/94‑1 (MQ=60)
TGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTT > SRR4302534.3745526/1‑94 (MQ=60)
TGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTT < SRR4302534.5840229/94‑1 (MQ=60)
TGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTT < SRR4302534.5776387/94‑1 (MQ=60)
ACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTG < SRR4302534.5313162/94‑1 (MQ=60)
CGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGT < SRR4302534.5850628/94‑1 (MQ=60)
CGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGT < SRR4302534.718802/94‑1 (MQ=60)
CGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGT < SRR4302534.6152123/94‑1 (MQ=60)
CGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGT < SRR4302534.2047244/94‑1 (MQ=60)
GGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTG < SRR4302534.3981857/94‑1 (MQ=60)
GGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTG > SRR4302534.4918087/1‑94 (MQ=60)
GGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTG > SRR4302534.5440730/1‑94 (MQ=60)
GGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTG < SRR4302534.2097659/94‑1 (MQ=60)
GGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGC > SRR4302534.4550631/1‑94 (MQ=60)
CAGTCAGACGTCCGCGTCCAACAGCTTACAGACCGAAGCTGCCGAAGCTAACATCCGCTCCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCAT < SRR4302534.5733708/94‑1 (MQ=60)
CAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCAT < SRR4302534.3348936/94‑1 (MQ=60)
CAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCAT < SRR4302534.2580843/94‑1 (MQ=60)
CAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCAT > SRR4302534.2199409/1‑94 (MQ=60)
AGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATT > SRR4302534.3027029/1‑94 (MQ=60)
AGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATT > SRR4302534.5052344/1‑94 (MQ=60)
AGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATT > SRR4302534.4277353/1‑94 (MQ=60)
AGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATT > SRR4302534.5705176/1‑94 (MQ=60)
AGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATT > SRR4302534.2254285/1‑94 (MQ=60)
GTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTT < SRR4302534.103952/94‑1 (MQ=60)
TCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTT < SRR4302534.2582934/94‑1 (MQ=60)
TCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTT > SRR4302534.2521628/1‑94 (MQ=60)
TCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCAGTTACGGCCTTTGTGCATTTT > SRR4302534.6402015/1‑94 (MQ=60)
CAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTA > SRR4302534.4871816/1‑94 (MQ=60)
CAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTA > SRR4302534.6214156/1‑94 (MQ=60)
GACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACG > SRR4302534.5497843/1‑94 (MQ=60)
ACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGG < SRR4302534.3333616/94‑1 (MQ=60)
CGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGA < SRR4302534.113360/94‑1 (MQ=60)
CGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGA < SRR4302534.524021/94‑1 (MQ=60)
GACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAA < SRR4302534.4580798/94‑1 (MQ=60)
ACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAAT < SRR4302534.6311398/94‑1 (MQ=60)
CACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTT < SRR4302534.2761564/94‑1 (MQ=60)
CACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTT < SRR4302534.2554714/94‑1 (MQ=60)
ACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTT < SRR4302534.4920982/94‑1 (MQ=60)
CGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTG < SRR4302534.1795277/94‑1 (MQ=60)
GGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGT > SRR4302534.2360016/1‑94 (MQ=60)
CCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTAC < SRR4302534.4132175/94‑1 (MQ=60)
CAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTCCGGAATTTTGTACG < SRR4302534.6635552/94‑1 (MQ=60)
CAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACG > SRR4302534.3478632/1‑94 (MQ=60)
CAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACG > SRR4302534.4375659/1‑94 (MQ=60)
CAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACG < SRR4302534.1207048/94‑1 (MQ=60)
ACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCT > SRR4302534.4533039/1‑94 (MQ=60)
ACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCT < SRR4302534.255785/94‑1 (MQ=60)
ACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCT < SRR4302534.2387853/94‑1 (MQ=60)
ACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCT < SRR4302534.585747/94‑1 (MQ=60)
ACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCT < SRR4302534.760986/94‑1 (MQ=60)
ACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCT < SRR4302534.4160760/94‑1 (MQ=60)
CAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTT < SRR4302534.4565466/94‑1 (MQ=60)
CAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTT < SRR4302534.2784489/94‑1 (MQ=60)
AGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTT > SRR4302534.1010598/1‑94 (MQ=60)
CTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTATGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGG < SRR4302534.4660385/94‑1 (MQ=60)
CTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGG < SRR4302534.3928753/94‑1 (MQ=60)
CTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGG > SRR4302534.823585/1‑94 (MQ=60)
CTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGG < SRR4302534.4100623/94‑1 (MQ=60)
CTTTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGG < SRR4302534.5910544/94‑1 (MQ=60)
TTCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTT < SRR4302534.320248/94‑1 (MQ=60)
TCAGACGGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTGCGCTTTGGTTG < SRR4302534.2965400/94‑1 (MQ=60)
TCAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTG < SRR4302534.2346706/94‑1 (MQ=60)
CAGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGT < SRR4302534.178710/94‑1 (MQ=60)
AGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTA > SRR4302534.2954060/1‑94 (MQ=60)
AGACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTA > SRR4302534.3768526/1‑94 (MQ=60)
ACCGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAAC < SRR4302534.1864394/94‑1 (MQ=60)
CGAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACAT > SRR4302534.5507469/1‑94 (MQ=60)
GAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATC < SRR4302534.3919838/94‑1 (MQ=60)
GAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATC > SRR4302534.3991649/1‑94 (MQ=60)
GAAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATC > SRR4302534.2773735/1‑94 (MQ=60)
AAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCA > SRR4302534.4999421/1‑94 (MQ=60)
AAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCA < SRR4302534.1374956/94‑1 (MQ=60)
AAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCA > SRR4302534.5066728/1‑94 (MQ=60)
AAGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCA < SRR4302534.5440716/94‑1 (MQ=60)
AGCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAG < SRR4302534.4925426/94‑1 (MQ=60)
GCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGC < SRR4302534.3606373/94‑1 (MQ=60)
GCTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGC < SRR4302534.2830988/94‑1 (MQ=60)
CTGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCG < SRR4302534.4369780/94‑1 (MQ=60)
TGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGA > SRR4302534.703426/1‑94 (MQ=60)
TGCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGA > SRR4302534.1689439/1‑94 (MQ=60)
GCCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGAC < SRR4302534.3326974/94‑1 (MQ=60)
CCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACG < SRR4302534.84709/94‑1 (MQ=60)
CCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACG < SRR4302534.3166594/94‑1 (MQ=60)
CCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACG > SRR4302534.2414733/1‑94 (MQ=60)
CCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACG < SRR4302534.2581760/94‑1 (MQ=60)
CCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACG < SRR4302534.1914811/94‑1 (MQ=60)
CCGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACG < SRR4302534.249729/94‑1 (MQ=60)
CGAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGC > SRR4302534.433310/1‑94 (MQ=60)
TAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCT > SRR4302534.1949146/1‑94 (MQ=60)
GAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCT < SRR4302534.878272/94‑1 (MQ=60)
GAAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCT > SRR4302534.2446201/1‑94 (MQ=60)
AAGCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTC > SRR4302534.1533244/1‑94 (MQ=60)
GCTATCATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCT < SRR4302534.1434902/94‑1 (MQ=60)
GCTAACATCCGCCCCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCA < SRR4302534.3642728/94‑1 (MQ=60)
GCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCT < SRR4302534.303919/94‑1 (MQ=60)
GCTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCT < SRR4302534.3274216/94‑1 (MQ=60)
CTAACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTT < SRR4302534.4537842/94‑1 (MQ=60)
TAACATCCGCCCCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTA < SRR4302534.3235492/94‑1 (MQ=60)
AACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTAT > SRR4302534.2340193/1‑94 (MQ=60)
AACATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTAT > SRR4302534.2513225/1‑94 (MQ=60)
CATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTT < SRR4302534.6121634/94‑1 (MQ=60)
CATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTT < SRR4302534.3813210/94‑1 (MQ=60)
CATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTT > SRR4302534.1969133/1‑94 (MQ=60)
CATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTT < SRR4302534.3531834/94‑1 (MQ=60)
ATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTA > SRR4302534.4124994/1‑94 (MQ=60)
ATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTA > SRR4302534.6194974/1‑94 (MQ=60)
ATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTA < SRR4302534.5216377/94‑1 (MQ=60)
ATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTA > SRR4302534.3954926/1‑94 (MQ=60)
ATCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTA > SRR4302534.5362960/1‑94 (MQ=60)
TCCGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTAC < SRR4302534.279382/94‑1 (MQ=60)
CGCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGG > SRR4302534.56756/1‑94 (MQ=60)
GCACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGC > SRR4302534.5853824/1‑94 (MQ=60)
CACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCC > SRR4302534.1899759/1‑94 (MQ=60)
CACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCC > SRR4302534.4345467/1‑94 (MQ=60)
|
GGGTCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCC > NC_000913/3446644‑3446830
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |