Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,477,397	T→C	N283S (AAC→AGC)	kefB ←	KefB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,477,397	0	T	C	100.0%	904.4 / NA	258	N283S (AAC→AGC)	kefB	KefB
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (127/131); total (127/131)

Only 100 of 260 total aligned reads displayed.

GCCAGCAGATACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGTTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATGGCGATATTCA  >  NC_000913/3477307‑3477486

gcCAGCAGATACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTg                                                                                         <  1:3605371/93‑1 (MQ=255)

gcCAGCAGATACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTg                                                                                         >  1:5269791/1‑93 (MQ=255)

gcCAGCAGATACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTg                                                                                         >  2:5784647/1‑93 (MQ=255)

gcCAGCAGATACAGCACGAGAATCTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTg                                                                                         <  1:6110609/93‑1 (MQ=255)

 ccAGCAGATACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGa                                                                                        >  2:3589409/1‑93 (MQ=255)

  cagcagATACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAg                                                                                       <  1:1665235/93‑1 (MQ=255)

      agATACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGAc                                                                                   >  2:2701440/1‑93 (MQ=255)

      agATACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGAc                                                                                   >  1:6264910/1‑93 (MQ=255)

      agATACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGAGAc                                                                                   >  2:4609321/1‑93 (MQ=255)

       gATACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACa                                                                                  >  2:1999497/1‑93 (MQ=255)

       gATACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACa                                                                                  <  2:2841928/93‑1 (MQ=255)

          aCAGCACGAGAATTTTCACTGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGc                                                                               >  1:5938277/1‑93 (MQ=255)

          aCAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGc                                                                               >  2:5535900/1‑93 (MQ=255)

          aCAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGc                                                                               >  1:3541297/1‑93 (MQ=255)

          aCAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGc                                                                               >  2:3988118/1‑93 (MQ=255)

           cAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGcc                                                                              <  2:4378733/93‑1 (MQ=255)

           cAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGcc                                                                              <  1:3520714/93‑1 (MQ=255)

            aGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCg                                                                             >  1:2300771/1‑93 (MQ=255)

             gCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGa                                                                            <  1:3697853/93‑1 (MQ=255)

             gCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGa                                                                            >  2:5060951/1‑93 (MQ=255)

               aCGAGAATTTTCACCGCCACCAGCACAGCCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGTCa                                                                          <  1:5470790/93‑1 (MQ=255)

               aCGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACa                                                                          <  2:5883777/93‑1 (MQ=255)

               aCGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACa                                                                          <  2:2044782/93‑1 (MQ=255)

               aCGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACa                                                                          >  1:4143645/1‑93 (MQ=255)

                 gagaATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACaga                                                                        >  2:6115571/1‑93 (MQ=255)

                  agaATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACagag                                                                       <  2:1283195/93‑1 (MQ=255)

                    aaTTTTCACCGCCACCAGCACAACCACGCTTATCACTGCCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGAt                                                                     <  2:5443082/93‑1 (MQ=255)

                      ttttCACCGCCACCAGCACAACCTCGCTTACCACTACCCTCAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATaa                                                                   <  2:4618920/93‑1 (MQ=255)

                      ttttCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATaa                                                                   >  2:896767/1‑93 (MQ=255)

                       tttCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATaaa                                                                  <  2:5683757/93‑1 (MQ=255)

                          cACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGaa                                                               >  1:1565457/1‑93 (MQ=255)

                           aCCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAAc                                                              <  2:748508/93‑1 (MQ=255)

                           aCCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAAc                                                              >  1:5688102/1‑93 (MQ=255)

                            ccGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGAGATGCCGACAGAGATAAAGAACa                                                             >  2:1581543/1‑93 (MQ=255)

                            ccGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACa                                                             <  1:654827/93‑1 (MQ=255)

                            ccGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACa                                                             >  1:109751/1‑93 (MQ=255)

                              gCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACaaa                                                           <  2:3840594/93‑1 (MQ=255)

                                caccaGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGCCATGCCGACAGAGATAAAGAACAAAcc                                                         >  1:1881637/1‑93 (MQ=255)

                                  ccaGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGa                                                       <  2:1625096/93‑1 (MQ=255)

                                  ccaGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGa                                                       >  2:1010192/1‑93 (MQ=255)

                                  ccaGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGa                                                       >  2:3752167/1‑93 (MQ=255)

                                  ccaGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGa                                                       <  1:2063956/93‑1 (MQ=255)

                                    aGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGagc                                                     >  1:5871498/1‑93 (MQ=255)

                                     gCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGagca                                                    >  1:1634610/1‑93 (MQ=255)

                                      cacaACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAAACGagcag                                                   >  2:1734154/1‑93 (MQ=255)

                                       acaACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGagcagc                                                  >  1:2599399/1‑93 (MQ=255)

                                       acaACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGagcagc                                                  <  1:3038422/93‑1 (MQ=255)

                                        caACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAgcagca                                                 >  2:5599411/1‑93 (MQ=255)

                                         aaCCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAACCCGAGCAGCaa                                                >  1:4250129/1‑93 (MQ=255)

                                         aaCCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCaa                                                >  1:2207412/1‑93 (MQ=255)

                                         aaCCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCaa                                                >  2:6108425/1‑93 (MQ=255)

                                           ccACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGc                                              <  1:4422916/93‑1 (MQ=255)

                                           ccACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCGGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGc                                              <  1:4583224/93‑1 (MQ=255)

                                            cACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGcc                                             <  2:6365465/93‑1 (MQ=255)

                                             ccGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCt                                            <  2:1358815/92‑1 (MQ=255)

                                             ccGCTAATCACTACCCAGAACAGATGGCTATAAAGCACCCCGAGGCTGAGTGACATGCGGACAGAGATAAAGACCAAACCGAGCAGCAAGCCt                                            <  1:3157306/92‑1 (MQ=255)

                                               gCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCttt                                          <  1:4761831/93‑1 (MQ=255)

                                                cTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTg                                         <  2:4948459/93‑1 (MQ=255)

                                                  tATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGaa                                       <  1:4641095/93‑1 (MQ=255)

                                                   aTCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGCGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAg                                      >  1:797940/1‑93 (MQ=255)

                                                   aTCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGCAg                                      >  1:3316087/1‑93 (MQ=255)

                                                    tCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAgg                                     >  1:929654/1‑93 (MQ=255)

                                                    tCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAgg                                     >  1:5239112/1‑93 (MQ=255)

                                                    tCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAgg                                     <  2:2348123/93‑1 (MQ=255)

                                                     cACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAggg                                    <  2:2564893/93‑1 (MQ=255)

                                                     cACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAggg                                    <  1:4911653/93‑1 (MQ=255)

                                                      aCTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGa                                   <  2:2418642/93‑1 (MQ=255)

                                                      aCTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGa                                   >  2:2070472/1‑93 (MQ=255)

                                                      aCTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGa                                   >  1:1731117/1‑93 (MQ=255)

                                                      aCTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGa                                   <  1:5512087/93‑1 (MQ=255)

                                                      aCTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGa                                   >  1:6050229/1‑93 (MQ=255)

                                                        tACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATc                                 >  1:4988881/1‑93 (MQ=255)

                                                         tcccACAAAAGAGGGGTATAAAGCACCCCGAGGCTGAGTGACATCCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCg                                <  1:1777840/92‑1 (MQ=255)

                                                          cccACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGa                               >  2:2630128/1‑93 (MQ=255)

                                                            cacaACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATa                             >  2:4512099/1‑93 (MQ=255)

                                                            cacaACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATa                             <  1:5801246/93‑1 (MQ=255)

                                                             acaacaGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAg                            <  1:6419302/93‑1 (MQ=255)

                                                              caacaGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGc                           <  2:305713/93‑1 (MQ=255)

                                                                acaGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCg                         >  2:4865106/1‑93 (MQ=255)

                                                                  aGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGtt                       <  1:4690847/93‑1 (MQ=255)

                                                                  aGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGtt                       <  1:5060951/93‑1 (MQ=255)

                                                                    aTGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTc                     <  2:2894130/93‑1 (MQ=255)

                                                                     tGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTcc                    <  2:3377142/93‑1 (MQ=255)

                                                                     tGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTcc                    >  1:2902030/1‑93 (MQ=255)

                                                                          ataAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTc               <  1:1295974/93‑1 (MQ=255)

                                                                          ataAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTc               >  2:4083886/1‑93 (MQ=255)

                                                                            aaaGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCAt             <  2:5218432/93‑1 (MQ=255)

                                                                             aaGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATg            >  1:278615/1‑93 (MQ=255)

                                                                              aGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATgg           >  1:1376455/1‑93 (MQ=255)

                                                                              aGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATgg           >  1:366606/1‑93 (MQ=255)

                                                                              aGCAACCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATgg           <  1:5640924/93‑1 (MQ=255)

                                                                               gCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATGGc          <  2:3491545/93‑1 (MQ=255)

                                                                               gCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATGGc          <  2:1256982/93‑1 (MQ=255)

                                                                                 cccccGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATGGCGa        <  2:523618/92‑1 (MQ=255)

                                                                                 aCCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATGGCGa        >  2:1861374/1‑93 (MQ=255)

                                                                                  ccccGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATGGCGat       <  1:117554/93‑1 (MQ=255)

                                                                                   cccGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATGGCGata      <  1:2428492/93‑1 (MQ=255)

                                                                                    ccGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATGGCGatat     >  2:3709820/1‑93 (MQ=255)

                                                                                     cGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATGGCGATAtt    >  2:3178044/1‑93 (MQ=255)

                                                                                       aGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGCAGGGATCGATAGCCGTTTCCAGTTCATGGCGATATTCa  >  2:3333282/1‑93 (MQ=255)

GCCAGCAGATACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGTTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATGGCGATATTCA  >  NC_000913/3477307‑3477486

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGCGCCAGCAGATACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGTTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATGGCGATATTCACTTT  >  NC_000913/3477304‑3477490

CGCGCCAGCAGATACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGC                                                                                               >  SRR4302534.5070555/1‑94 (MQ=60)

CGCGCCAGCAGATACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGC                                                                                               >  SRR4302534.6109084/1‑94 (MQ=60)

 GCGCCAGCAGATACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCT                                                                                              <  SRR4302534.3490024/94‑1 (MQ=60)

 GCGCCAGCAGATACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCT                                                                                              <  SRR4302534.4700831/94‑1 (MQ=60)

  CGCCAGCAGATACAGCACGAGAATTTTCCCCGCCAACAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTG                                                                                             <  SRR4302534.3468402/94‑1 (MQ=60)

  CGCCAGCAGATACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCTGAGGCTG                                                                                             <  SRR4302534.5898905/94‑1 (MQ=60)

  CGCCAGCAGATACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTG                                                                                             >  SRR4302534.1710565/1‑94 (MQ=60)

  CGCCAGCAGATACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTG                                                                                             <  SRR4302534.3061317/94‑1 (MQ=60)

  CGCCAGCAGATACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTG                                                                                             >  SRR4302534.5412142/1‑94 (MQ=60)

  CGCCAGCAGATACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTG                                                                                             <  SRR4302534.5407131/94‑1 (MQ=60)

  CGCCAGCAGATACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTG                                                                                             <  SRR4302534.2351814/94‑1 (MQ=60)

   GCCAGCAGATACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGA                                                                                            <  SRR4302534.3702319/94‑1 (MQ=60)

   GCCAGCAGATACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGA                                                                                            <  SRR4302534.5643147/94‑1 (MQ=60)

   GCCAGCAGATACAGCACGAGAATCTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGA                                                                                            <  SRR4302534.6276815/94‑1 (MQ=60)

    CCAGCAGATACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAG                                                                                           >  SRR4302534.759338/1‑94 (MQ=60)

    CCAGCAGATACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAG                                                                                           >  SRR4302534.3507123/1‑94 (MQ=60)

    CCACCAGATACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAG                                                                                           <  SRR4302534.2339550/94‑1 (MQ=60)

     CAGCAGATACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGT                                                                                          <  SRR4302534.1708575/94‑1 (MQ=60)

      AGCAGATACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTG                                                                                         >  SRR4302534.882405/1‑94 (MQ=60)

        CAGATACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGAC                                                                                       >  SRR4302534.6434596/1‑94 (MQ=60)

         AGATACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACA                                                                                      >  SRR4302534.5950060/1‑94 (MQ=60)

         AGATACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACA                                                                                      <  SRR4302534.1850644/94‑1 (MQ=60)

         AGATACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGCATAAAGCACCCCGAGGCTGAGTGACA                                                                                      >  SRR4302534.669430/1‑94 (MQ=60)

          GATACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACAT                                                                                     <  SRR4302534.514350/94‑1 (MQ=60)

            TACAGCACGAGAATTTTCACTGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGC                                                                                   >  SRR4302534.6099522/1‑94 (MQ=60)

            TACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGC                                                                                   <  SRR4302534.4784442/94‑1 (MQ=60)

            TACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGC                                                                                   >  SRR4302534.3636566/1‑94 (MQ=60)

             ACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCC                                                                                  <  SRR4302534.3117807/94‑1 (MQ=60)

             ACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCC                                                                                  <  SRR4302534.1933064/94‑1 (MQ=60)

              CAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCG                                                                                 >  SRR4302534.2361841/1‑94 (MQ=60)

              CAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCG                                                                                 <  SRR4302534.3615415/94‑1 (MQ=60)

                GCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGAC                                                                               <  SRR4302534.3797267/94‑1 (MQ=60)

                 CACGAGAATTTTCACCGCCACCAGCACAACCACGCTTGTCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACA                                                                              >  SRR4302534.3442650/1‑94 (MQ=60)

                 CACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACA                                                                              >  SRR4302534.4255474/1‑94 (MQ=60)

                 CACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACA                                                                              <  SRR4302534.4803573/94‑1 (MQ=60)

                  ACGAGAATTTTCACCGCCACCAGCACAGCCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGTCAG                                                                             <  SRR4302534.5618277/94‑1 (MQ=60)

                  ACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAG                                                                             >  SRR4302534.6202527/1‑94 (MQ=60)

                     AGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGA                                                                          >  SRR4302534.4060045/1‑94 (MQ=60)

                      GAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGAT                                                                         >  SRR4302534.598946/1‑94 (MQ=60)

                       AATTTCCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGTTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATA                                                                        <  SRR4302534.5577962/94‑1 (MQ=60)

                        ATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAA                                                                       <  SRR4302534.1767471/94‑1 (MQ=60)

                            TCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAA                                                                   >  SRR4302534.1606427/1‑94 (MQ=60)

                             CACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAAC                                                                  >  SRR4302534.5842143/1‑94 (MQ=60)

                              ACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACA                                                                 >  SRR4302534.2447475/1‑94 (MQ=60)

                              ACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACA                                                                 >  SRR4302534.112679/1‑94 (MQ=60)

                               CCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAA                                                                <  SRR4302534.670776/94‑1 (MQ=60)

                               CCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAA                                                                >  SRR4302534.4709068/1‑94 (MQ=60)

                                  CCACCAGCAGAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACC                                                             <  SRR4302534.4450434/94‑1 (MQ=60)

                                  CCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGCCATGCCGACAGAGATAAAGAACAAACC                                                             >  SRR4302534.1930659/1‑94 (MQ=60)

                                  CCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACC                                                             <  SRR4302534.5959119/94‑1 (MQ=60)

                                  CCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACC                                                             <  SRR4302534.3340382/94‑1 (MQ=60)

                                     CCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAG                                                          <  SRR4302534.2117927/94‑1 (MQ=60)

                                      CAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGC                                                         >  SRR4302534.6030913/1‑94 (MQ=60)

                                       AGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCA                                                        <  SRR4302534.4851910/94‑1 (MQ=60)

                                       AGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCA                                                        <  SRR4302534.3716122/94‑1 (MQ=60)

                                       AGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCA                                                        >  SRR4302534.1677220/1‑94 (MQ=60)

                                         CACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGC                                                      >  SRR4302534.2668184/1‑94 (MQ=60)

                                          ACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACCGACATAAAGAACAAACCGAGCAGCA                                                     >  SRR4302534.1189908/1‑94 (MQ=60)

                                          ACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCA                                                     <  SRR4302534.3118094/94‑1 (MQ=60)

                                           CAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAACCCGAGCAGCAA                                                    >  SRR4302534.4364786/1‑94 (MQ=60)

                                           CAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAA                                                    <  SRR4302534.5007122/94‑1 (MQ=60)

                                           CAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAA                                                    >  SRR4302534.3628017/1‑94 (MQ=60)

                                           CAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAA                                                    >  SRR4302534.2265847/1‑94 (MQ=60)

                                            AACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAG                                                   <  SRR4302534.429144/94‑1 (MQ=60)

                                              CCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCC                                                 <  SRR4302534.4542332/94‑1 (MQ=60)

                                              CCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCGGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCC                                                 <  SRR4302534.4707575/94‑1 (MQ=60)

                                               CACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCT                                                >  SRR4302534.6532430/1‑94 (MQ=60)

                                               CACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCT                                                <  SRR4302534.5673857/94‑1 (MQ=60)

                                                CCGCTAATCACTACCCAGAACAGATGGCTATAAAGCACCCCGAGGCTGAGTGACATGCGGACAGAGATAAAGACCAAACCGAGCAGCAAGCCTT                                               <  SRR4302534.3240467/94‑1 (MQ=60)

                                                  GCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTG                                             <  SRR4302534.4891125/94‑1 (MQ=60)

                                                  GCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTG                                             <  SRR4302534.5004086/94‑1 (MQ=60)

                                                   CTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGA                                            <  SRR4302534.1462184/94‑1 (MQ=60)

                                                    TTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAA                                           >  SRR4302534.2307518/1‑94 (MQ=60)

                                                    TTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAA                                           <  SRR4302534.5163966/94‑1 (MQ=60)

                                                     TATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGCGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAG                                          >  SRR4302534.817973/1‑94 (MQ=60)

                                                     TATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGCAG                                          >  SRR4302534.3404704/1‑94 (MQ=60)

                                                     TATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAG                                          <  SRR4302534.5055157/94‑1 (MQ=60)

                                                     TATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAG                                          >  SRR4302534.3844067/1‑94 (MQ=60)

                                                     TATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAG                                          <  SRR4302534.4767031/94‑1 (MQ=60)

                                                      ATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGG                                         >  SRR4302534.5380576/1‑94 (MQ=60)

                                                      ATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGG                                         >  SRR4302534.1657594/1‑94 (MQ=60)

                                                      ATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGG                                         >  SRR4302534.953309/1‑94 (MQ=60)

                                                       TCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGG                                        >  SRR4302534.3218449/1‑94 (MQ=60)

                                                        CACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGA                                       >  SRR4302534.6214727/1‑94 (MQ=60)

                                                        CACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGA                                       >  SRR4302534.1776077/1‑94 (MQ=60)

                                                        CACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGA                                       <  SRR4302534.282144/94‑1 (MQ=60)

                                                        CACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGA                                       <  SRR4302534.5044766/94‑1 (MQ=60)

                                                         ACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGAT                                      <  SRR4302534.5660786/94‑1 (MQ=60)

                                                         ACTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGAT                                      <  SRR4302534.1811999/94‑1 (MQ=60)

                                                          CTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATC                                     <  SRR4302534.5824778/94‑1 (MQ=60)

                                                          CTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATC                                     >  SRR4302534.5123855/1‑94 (MQ=60)

                                                          CTACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATC                                     <  SRR4302534.269425/94‑1 (MQ=60)

                                                           TACCCACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCG                                    <  SRR4302534.3781173/94‑1 (MQ=60)

                                                            TCCCACAAAAGAGGGGTATAAAGCACCCCGAGGCTGAGTGACATCCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGA                                   <  SRR4302534.1824004/94‑1 (MQ=60)

                                                               CACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAG                                <  SRR4302534.5958677/94‑1 (MQ=60)

                                                               CACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAG                                >  SRR4302534.1213260/1‑94 (MQ=60)

                                                               CACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAG                                <  SRR4302534.6303504/94‑1 (MQ=60)

                                                               CACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAG                                >  SRR4302534.1335763/1‑94 (MQ=60)

                                                                ACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGC                               >  SRR4302534.168936/1‑94 (MQ=60)

                                                                ACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGC                               >  SRR4302534.5436581/1‑94 (MQ=60)

                                                                ACAACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGC                               <  SRR4302534.6592460/94‑1 (MQ=60)

                                                                 CAACAGATGAGTAGAAAGCACCCCGAGGGTAAGTAACATGCCGACAGAGATAAAGAACAAACCGAGAAGCAAGCCTTTGAAGGGATCGATAGCC                              <  SRR4302534.2589146/94‑1 (MQ=60)

                                                                  AACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCG                             <  SRR4302534.2151304/94‑1 (MQ=60)

                                                                   ACAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGT                            >  SRR4302534.1627356/1‑94 (MQ=60)

                                                                    CAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTT                           >  SRR4302534.677975/1‑94 (MQ=60)

                                                                    CAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTT                           >  SRR4302534.870268/1‑94 (MQ=60)

                                                                    CAGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTT                           <  SRR4302534.5809626/94‑1 (MQ=60)

                                                                     AGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTT                          <  SRR4302534.5197625/94‑1 (MQ=60)

                                                                     AGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTT                          <  SRR4302534.1927819/94‑1 (MQ=60)

                                                                     AGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTT                          <  SRR4302534.6226087/94‑1 (MQ=60)

                                                                     AGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTT                          <  SRR4302534.4818172/94‑1 (MQ=60)

                                                                     AGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTT                          >  SRR4302534.2973845/1‑94 (MQ=60)

                                                                     AGATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTT                          <  SRR4302534.4733731/94‑1 (MQ=60)

                                                                      GATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTC                         <  SRR4302534.3788565/94‑1 (MQ=60)

                                                                       ATGGGTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCC                        >  SRR4302534.2978187/1‑94 (MQ=60)

                                                                           GTATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTT                    <  SRR4302534.1452712/94‑1 (MQ=60)

                                                                            TATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTC                   >  SRR4302534.3668927/1‑94 (MQ=60)

                                                                            TATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACAGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTC                   >  SRR4302534.2555559/1‑94 (MQ=60)

                                                                             ATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCA                  <  SRR4302534.1330126/94‑1 (MQ=60)

                                                                             ATAAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCA                  >  SRR4302534.5410711/1‑94 (MQ=60)

                                                                               AAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATG                >  SRR4302534.5726072/1‑94 (MQ=60)

                                                                               AAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATG                >  SRR4302534.285822/1‑94 (MQ=60)

                                                                               AAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATG                >  SRR4302534.1246159/1‑94 (MQ=60)

                                                                               AAAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATG                >  SRR4302534.5282508/1‑94 (MQ=60)

                                                                                AAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATGG               >  SRR4302534.375967/1‑94 (MQ=60)

                                                                                AAGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATGG               >  SRR4302534.1412721/1‑94 (MQ=60)

                                                                                 AGCACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATGGC              <  SRR4302534.6203249/94‑1 (MQ=60)

                                                                                 AGCAACCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATGGC              <  SRR4302534.5793604/94‑1 (MQ=60)

                                                                                    CCCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATGGCGAT           <  SRR4302534.4645353/94‑1 (MQ=60)

                                                                                    ACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATGGCGAT           <  SRR4302534.6505080/94‑1 (MQ=60)

                                                                                    ACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATGGCGAT           >  SRR4302534.211600/1‑94 (MQ=60)

                                                                                    ACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATGGCGAT           <  SRR4302534.366232/94‑1 (MQ=60)

                                                                                    ACCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATGGCGAT           <  SRR4302534.4500295/94‑1 (MQ=60)

                                                                                     CCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATGGCGATA          <  SRR4302534.120677/94‑1 (MQ=60)

                                                                                     CCCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATGGCGATA          >  SRR4302534.3315022/1‑94 (MQ=60)

                                                                                      CCCGAGGCTGAGTGATATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATGGCGATAT         >  SRR4302534.6228173/1‑94 (MQ=60)

                                                                                      CCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATGGCGATAT         <  SRR4302534.2493065/94‑1 (MQ=60)

                                                                                      CCCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATGGCGATAT         >  SRR4302534.5222174/1‑94 (MQ=60)

                                                                                       CCGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATGGCGATATT        <  SRR4302534.1003570/94‑1 (MQ=60)

                                                                                        CGAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATGGCGATATTC       <  SRR4302534.3013207/94‑1 (MQ=60)

                                                                                         GAGGCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATGGCGATATTCA      >  SRR4302534.6044221/1‑94 (MQ=60)

                                                                                            GCTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATGGCGATATTCACTT   <  SRR4302534.4575500/94‑1 (MQ=60)

                                                                                             CTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATGGCGATATTCACTTT  >  SRR4302534.4903873/1‑94 (MQ=60)

                                                                                             CTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATGGCGATATTCACTTT  <  SRR4302534.1598994/94‑1 (MQ=60)

CGCGCCAGCAGATACAGCACGAGAATTTTCACCGCCACCAGCACAACCACGCTTATCACTACCCACAACAGATGGGTATAAAGCACCCCGAGGTTGAGTGACATGCCGACAGAGATAAAGAACAAACCGAGCAGCAAGCCTTTGAAGGGATCGATAGCCGTTTCCAGTTCATGGCGATATTCACTTT  >  NC_000913/3477304‑3477490

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 5 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`