Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,483,905	T→C	V50A (GTG→GCG)	crp →	cyclic AMP receptor protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,483,905	0	T	C	100.0%	873.0 / NA	250	V50A (GTG→GCG)	crp	cyclic AMP receptor protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (107/143); total (107/143)

Only 100 of 263 total aligned reads displayed.

ACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGG  >  NC_000913/3483815‑3483994

acaTTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAgcgc                                                                                         >  1:5728130/1‑93 (MQ=255)

acaTTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAgcgc                                                                                         >  2:868153/1‑93 (MQ=255)

 caTTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCt                                                                                        >  2:6259420/1‑93 (MQ=255)

   ttCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGa                                                                                      <  2:1453632/93‑1 (MQ=255)

   ttCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGa                                                                                      <  2:3964880/93‑1 (MQ=255)

   ttCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGa                                                                                      >  2:4054166/1‑93 (MQ=255)

    tCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGAt                                                                                     <  1:858722/93‑1 (MQ=255)

    tCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGAt                                                                                     <  2:2307844/93‑1 (MQ=255)

    tCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGAt                                                                                     <  2:5064445/93‑1 (MQ=255)

     cATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATc                                                                                    <  1:3714976/93‑1 (MQ=255)

      aTAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCa                                                                                   >  2:6004448/1‑93 (MQ=255)

       tAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCaa                                                                                  >  2:1611150/1‑93 (MQ=255)

        aaGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCaaa                                                                                 >  2:6252421/1‑93 (MQ=255)

          gTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGa                                                                               <  2:96908/93‑1 (MQ=255)

          gTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGa                                                                               <  1:2155983/93‑1 (MQ=255)

           tACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGAc                                                                              <  1:5015578/93‑1 (MQ=255)

              ccATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGaa                                                                           <  1:2830072/93‑1 (MQ=255)

              ccATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGaa                                                                           >  2:3323225/1‑93 (MQ=255)

              ccATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGaa                                                                           <  1:4490056/93‑1 (MQ=255)

               cATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAag                                                                          <  2:5828164/93‑1 (MQ=255)

                aTCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAaga                                                                         <  2:4800754/93‑1 (MQ=255)

                aTCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAaga                                                                         >  2:6434298/1‑93 (MQ=255)

                aTCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAaga                                                                         <  2:2978380/93‑1 (MQ=255)

                 tCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAagag                                                                        >  2:694831/1‑93 (MQ=255)

                 tCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAagag                                                                        <  2:5577493/93‑1 (MQ=255)

                  ccAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAgg                                                                       <  2:4125104/93‑1 (MQ=255)

                   cAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAggg                                                                      >  1:2953084/1‑93 (MQ=255)

                   cAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAggg                                                                      >  2:1416707/1‑93 (MQ=255)

                   cAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAggg                                                                      <  1:2528513/93‑1 (MQ=255)

                    aaGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGt                                                                     >  2:6141819/1‑93 (MQ=255)

                    aaGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGt                                                                     >  2:3540390/1‑93 (MQ=255)

                    aaGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGt                                                                     >  2:3647056/1‑93 (MQ=255)

                     agagCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTa                                                                    <  2:4401146/93‑1 (MQ=255)

                     agagCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTa                                                                    <  1:1153261/93‑1 (MQ=255)

                      gagCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTaa                                                                   >  1:6182964/1‑93 (MQ=255)

                         cACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGa                                                                <  2:5846856/93‑1 (MQ=255)

                           cGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGaaa                                                              >  1:985936/1‑93 (MQ=255)

                            gCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAAt                                                             >  2:471204/1‑93 (MQ=255)

                             cTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATg                                                            >  1:3094883/1‑93 (MQ=255)

                               tATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGAt                                                          >  1:5618252/1‑93 (MQ=255)

                                aTTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATc                                                         >  1:2799119/1‑93 (MQ=255)

                                  tCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCct                                                       <  1:443063/93‑1 (MQ=255)

                                  tCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCct                                                       <  1:184447/93‑1 (MQ=255)

                                   cACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCctc                                                      <  2:1972625/93‑1 (MQ=255)

                                     ccAGGGTGAAAAAGCGTAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCtctc                                                    <  1:817290/93‑1 (MQ=255)

                                     ccAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCtctc                                                    >  1:3615283/1‑93 (MQ=255)

                                      cAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTcc                                                   <  1:4819109/93‑1 (MQ=255)

                                      cAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTcc                                                   <  2:2736270/93‑1 (MQ=255)

                                      cAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTcc                                                   <  2:6100313/93‑1 (MQ=255)

                                          gTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATc                                               <  1:6102340/93‑1 (MQ=255)

                                             aaaaaGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGa                                            >  2:2455029/1‑93 (MQ=255)

                                             aaaaaGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGa                                            <  2:81879/93‑1 (MQ=255)

                                             aaaaaGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGa                                            <  2:5208627/93‑1 (MQ=255)

                                              aaaaGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTgca                                           >  2:4981806/1‑91 (MQ=255)

                                              aaaaGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGaa                                           <  2:3091682/93‑1 (MQ=255)

                                                aaGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATc                                         >  1:1345567/1‑93 (MQ=255)

                                                  gCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAg                                       <  2:3235501/93‑1 (MQ=255)

                                                  gCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAg                                       >  1:3989868/1‑93 (MQ=255)

                                                  gCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAg                                       >  1:6402970/1‑93 (MQ=255)

                                                  gCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAg                                       >  1:1680184/1‑93 (MQ=255)

                                                  gCGGAAACGATGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAg                                       <  1:1987417/93‑1 (MQ=255)

                                                    ggAAACGCTGTACTACATCTTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAggg                                     <  2:4504338/93‑1 (MQ=255)

                                                     gAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGt                                    >  2:1894989/1‑93 (MQ=255)

                                                     gAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGt                                    <  1:4388891/93‑1 (MQ=255)

                                                     gAAACGCTGCACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAgggg                                    >  1:4867629/1‑92 (MQ=255)

                                                         cGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGAtt                                <  2:2856560/93‑1 (MQ=255)

                                                         cGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGAtt                                <  1:2488421/93‑1 (MQ=255)

                                                          gCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGAttt                               <  1:1480791/93‑1 (MQ=255)

                                                            tGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTa                             >  1:4085696/1‑93 (MQ=255)

                                                            tGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTa                             >  1:5164567/1‑93 (MQ=255)

                                                               actacATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTg                          <  2:2720809/93‑1 (MQ=255)

                                                                ctacATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTgg                         >  2:4611109/1‑93 (MQ=255)

                                                                 tacATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGc                        >  1:1022602/1‑93 (MQ=255)

                                                                 tacATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGc                        <  1:5335035/93‑1 (MQ=255)

                                                                  acATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCg                       <  2:2412675/93‑1 (MQ=255)

                                                                  acATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCg                       >  1:2986247/1‑93 (MQ=255)

                                                                   cATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGa                      >  2:1251682/1‑93 (MQ=255)

                                                                   cATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGa                      >  1:6323917/1‑93 (MQ=255)

                                                                    aTCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGCGATTTTATTGGCGaa                     >  2:3850081/1‑93 (MQ=255)

                                                                     tCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAAc                    <  2:5169849/93‑1 (MQ=255)

                                                                     tCGTTAAAGACTCTGTGGCAGCGCTGAGCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAAc                    <  1:3788106/93‑1 (MQ=255)

                                                                       gTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTg                  >  1:2363277/1‑93 (MQ=255)

                                                                         tAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTggg                >  2:1746013/1‑93 (MQ=255)

                                                                          aaaGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGc               <  1:2695702/93‑1 (MQ=255)

                                                                           aaGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGcc              >  2:6343443/1‑93 (MQ=255)

                                                                            aGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCt             <  1:1773763/93‑1 (MQ=255)

                                                                            aGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCt             <  2:430448/93‑1 (MQ=255)

                                                                            aGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTAATGGCGAACTGGGCCt             <  2:5949778/93‑1 (MQ=255)

                                                                             ggCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTg            >  2:2085319/1‑93 (MQ=255)

                                                                              gCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGt           <  1:744888/93‑1 (MQ=255)

                                                                               ctctGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGtt          <  2:3391231/93‑1 (MQ=255)

                                                                                tctGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGttt         <  2:424836/93‑1 (MQ=255)

                                                                                   gtgGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGaa      <  1:5867081/93‑1 (MQ=255)

                                                                                    tgGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAag     <  2:3358287/93‑1 (MQ=255)

                                                                                     ggCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAaga    <  2:213888/93‑1 (MQ=255)

                                                                                     ggCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAaga    <  2:5420624/93‑1 (MQ=255)

                                                                                      gCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAGCTGGGCCTGTTTGAagag   <  2:4323909/93‑1 (MQ=255)

                                                                                      gCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAagag   <  2:1166826/93‑1 (MQ=255)

                                                                                       cAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAgg  >  1:4287267/1‑93 (MQ=255)

                                                                                       cAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAgg  <  2:3719779/93‑1 (MQ=255)

ACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGG  >  NC_000913/3483815‑3483994

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC  >  NC_000913/3483814‑3483996

CACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGC                                                                                           >  SRR4302534.5883337/1‑94 (MQ=60)

 ACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCT                                                                                          <  SRR4302534.1981448/94‑1 (MQ=60)

  CATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTG                                                                                         <  SRR4302534.2422409/94‑1 (MQ=60)

    TTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGAT                                                                                       >  SRR4302534.4001169/1‑94 (MQ=60)

     TCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATC                                                                                      <  SRR4302534.880400/94‑1 (MQ=60)

      CATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCA                                                                                     <  SRR4302534.4187034/94‑1 (MQ=60)

      CATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCA                                                                                     <  SRR4302534.3814865/94‑1 (MQ=60)

          AGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGA                                                                                 >  SRR4302534.2901139/1‑94 (MQ=60)

           GTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGAC                                                                                >  SRR4302534.3833825/1‑94 (MQ=60)

           GTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGAC                                                                                <  SRR4302534.2212897/94‑1 (MQ=60)

            TACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACG                                                                               <  SRR4302534.5151114/94‑1 (MQ=60)

            TACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACG                                                                               <  SRR4302534.5360536/94‑1 (MQ=60)

              CCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAA                                                                             >  SRR4302534.4525155/1‑94 (MQ=60)

               CCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAG                                                                            <  SRR4302534.2904450/94‑1 (MQ=60)

               CCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAG                                                                            <  SRR4302534.4611555/94‑1 (MQ=60)

               CCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAG                                                                            <  SRR4302534.4836483/94‑1 (MQ=60)

                 ATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAG                                                                          <  SRR4302534.599858/94‑1 (MQ=60)

                   CCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGG                                                                        >  SRR4302534.3030507/1‑94 (MQ=60)

                   CCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGG                                                                        <  SRR4302534.6352081/94‑1 (MQ=60)

                    CAAGAGCACGCTTATTCACCAGGGTGCAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGT                                                                       <  SRR4302534.5341211/94‑1 (MQ=60)

                    CAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGT                                                                       <  SRR4302534.2595603/94‑1 (MQ=60)

                     AAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTA                                                                      <  SRR4302534.3548530/94‑1 (MQ=60)

                     AAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTC‑‑TGGCAGCGCTGATCAAAGACGAAGAGGGTAAA                                                                    <  SRR4302534.262065/94‑1 (MQ=60)

                      AGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAA                                                                     >  SRR4302534.6351256/1‑94 (MQ=60)

                      AGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAA                                                                     <  SRR4302534.1183493/94‑1 (MQ=60)

                       GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAA                                                                    <  SRR4302534.1235816/94‑1 (MQ=60)

                         GCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGA                                                                  >  SRR4302534.4410251/1‑94 (MQ=60)

                          CACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAA                                                                 <  SRR4302534.2018691/94‑1 (MQ=60)

                           ACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAA                                                                >  SRR4302534.1011128/1‑94 (MQ=60)

                            CGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGCAAAGAAAT                                                               >  SRR4302534.5004669/1‑94 (MQ=60)

                             GCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATG                                                              >  SRR4302534.2747389/1‑94 (MQ=60)

                             GCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATG                                                              >  SRR4302534.3176295/1‑94 (MQ=60)

                             GCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATG                                                              <  SRR4302534.303280/94‑1 (MQ=60)

                              CTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGA                                                             >  SRR4302534.4589875/1‑94 (MQ=60)

                               TTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGAT                                                            <  SRR4302534.1444308/94‑1 (MQ=60)

                               TTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGAT                                                            >  SRR4302534.3256967/1‑94 (MQ=60)

                               TTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGAT                                                            >  SRR4302534.5770268/1‑94 (MQ=60)

                                TATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATC                                                           <  SRR4302534.842771/94‑1 (MQ=60)

                                TATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATC                                                           >  SRR4302534.2872730/1‑94 (MQ=60)

                                TATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATC                                                           <  SRR4302534.3016306/94‑1 (MQ=60)

                                  TTCACCAGGGTGAAAAAGCGTAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCT                                                         <  SRR4302534.4408105/94‑1 (MQ=60)

                                   TCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTC                                                        <  SRR4302534.5215896/94‑1 (MQ=60)

                                   TCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTC                                                        <  SRR4302534.454313/94‑1 (MQ=60)

                                   TCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTC                                                        <  SRR4302534.5586405/94‑1 (MQ=60)

                                   TCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTC                                                        <  SRR4302534.189299/94‑1 (MQ=60)

                                    CACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCT                                                       >  SRR4302534.2855887/1‑94 (MQ=60)

                                     ACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTC                                                      >  SRR4302534.3712488/1‑94 (MQ=60)

                                     ACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTC                                                      >  SRR4302534.462457/1‑94 (MQ=60)

                                      CCAGGGTGAAAAAGCGTAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCC                                                     <  SRR4302534.837840/94‑1 (MQ=60)

                                      CCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCC                                                     <  SRR4302534.54895/94‑1 (MQ=60)

                                       CAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCT                                                    <  SRR4302534.4254819/94‑1 (MQ=60)

                                       CAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCT                                                    >  SRR4302534.1763387/1‑94 (MQ=60)

                                       CAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCT                                                    <  SRR4302534.1122303/94‑1 (MQ=60)

                                       CAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCT                                                    <  SRR4302534.4949902/94‑1 (MQ=60)

                                        AGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTA                                                   <  SRR4302534.942577/94‑1 (MQ=60)

                                        AGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTA                                                   <  SRR4302534.3095771/94‑1 (MQ=60)

                                           GTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCT                                                <  SRR4302534.6268272/94‑1 (MQ=60)

                                           GTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCT                                                <  SRR4302534.745283/94‑1 (MQ=60)

                                           GTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCT                                                <  SRR4302534.6285447/94‑1 (MQ=60)

                                           GTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCT                                                >  SRR4302534.6026933/1‑94 (MQ=60)

                                             GAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGA                                              <  SRR4302534.666234/94‑1 (MQ=60)

                                                AAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATC                                           <  SRR4302534.4550289/94‑1 (MQ=60)

                                                AAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATC                                           >  SRR4302534.1381039/1‑94 (MQ=60)

                                                 AAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCA                                          <  SRR4302534.6463874/94‑1 (MQ=60)

                                                  AGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAG                                         >  SRR4302534.6575836/1‑94 (MQ=60)

                                                  AGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAG                                         >  SRR4302534.4096637/1‑94 (MQ=60)

                                                  AGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAG                                         >  SRR4302534.1723896/1‑94 (MQ=60)

                                                   GCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGG                                        <  SRR4302534.1550425/94‑1 (MQ=60)

                                                   GCGGAAACGATGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGG                                        <  SRR4302534.2039460/94‑1 (MQ=60)

                                                    CGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGG                                       >  SRR4302534.6122741/1‑94 (MQ=60)

                                                     GGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGT                                      <  SRR4302534.4292125/94‑1 (MQ=60)

                                                     GGAAACGCTGCACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGG                                      >  SRR4302534.4999668/1‑94 (MQ=60)

                                                      GAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTG                                     <  SRR4302534.4507236/94‑1 (MQ=60)

                                                      GAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTG                                     <  SRR4302534.5062639/94‑1 (MQ=60)

                                                       AAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGA                                    <  SRR4302534.909740/94‑1 (MQ=60)

                                                       AAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGA                                    >  SRR4302534.1727017/1‑94 (MQ=60)

                                                          CGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTT                                 <  SRR4302534.2554529/94‑1 (MQ=60)

                                                          CGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTT                                 <  SRR4302534.497863/94‑1 (MQ=60)

                                                           GCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTT                                <  SRR4302534.1519729/94‑1 (MQ=60)

                                                            CTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTA                               >  SRR4302534.4195405/1‑94 (MQ=60)

                                                            CTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTA                               >  SRR4302534.5303787/1‑94 (MQ=60)

                                                             TGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTAT                              >  SRR4302534.2492486/1‑94 (MQ=60)

                                                             TGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTAT                              <  SRR4302534.254151/94‑1 (MQ=60)

                                                                 CTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGC                          >  SRR4302534.209093/1‑94 (MQ=60)

                                                                 CTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGC                          >  SRR4302534.1048931/1‑94 (MQ=60)

                                                                  TACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCG                         <  SRR4302534.5478893/94‑1 (MQ=60)

                                                                  TACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCG                         >  SRR4302534.3064348/1‑94 (MQ=60)

                                                                   ACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGA                        >  SRR4302534.6494776/1‑94 (MQ=60)

                                                                    CATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTTTCGAA                       >  SRR4302534.1301679/1‑94 (MQ=60)

                                                                      TCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACT                     <  SRR4302534.6566273/94‑1 (MQ=60)

                                                                      TCGTTAAAGACTCTGTGGCAGCGCTGAGCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACT                     <  SRR4302534.3889805/94‑1 (MQ=60)

                                                                       CGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTG                    >  SRR4302534.2426008/1‑94 (MQ=60)

                                                                       CGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTG                    <  SRR4302534.3050778/94‑1 (MQ=60)

                                                                        GTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGG                   >  SRR4302534.159585/1‑94 (MQ=60)

                                                                        GTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGGAAAGAAATGATCCTCTCCTATCTGCATCAGGGTGATTTTATTTGCGAAATGG                   >  SRR4302534.5567118/1‑94 (MQ=60)

                                                                          TAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGC                 >  SRR4302534.4022712/1‑94 (MQ=60)

                                                                          TAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTAGCGAACTGGGC                 >  SRR4302534.3732184/1‑94 (MQ=60)

                                                                           AAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCC                <  SRR4302534.2766930/94‑1 (MQ=60)

                                                                             AGGCTCTGTGGCAGCGCTGATCAAAGTCGAAGAGGGTAAAGAAATGATCCTCTCTTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTG              <  SRR4302534.2842564/94‑1 (MQ=60)

                                                                             AGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTG              <  SRR4302534.1829090/94‑1 (MQ=60)

                                                                             AGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTG              <  SRR4302534.825976/94‑1 (MQ=60)

                                                                             AGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTG              <  SRR4302534.1819797/94‑1 (MQ=60)

                                                                               GCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTT            <  SRR4302534.763351/94‑1 (MQ=60)

                                                                                CTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAGTGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTT           <  SRR4302534.3005071/94‑1 (MQ=60)

                                                                                   TGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAA        <  SRR4302534.809830/94‑1 (MQ=60)

                                                                                    GTGGCAGCTCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAG       <  SRR4302534.3817659/94‑1 (MQ=60)

                                                                                    GTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAG       <  SRR4302534.6026383/94‑1 (MQ=60)

                                                                                     TGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGA      >  SRR4302534.5799021/1‑94 (MQ=60)

                                                                                      GGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAG     >  SRR4302534.2146722/1‑94 (MQ=60)

                                                                                       GCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGG    >  SRR4302534.6014437/1‑94 (MQ=60)

                                                                                       GCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGG    >  SRR4302534.4403416/1‑94 (MQ=60)

                                                                                        CAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGG   <  SRR4302534.2582878/94‑1 (MQ=60)

                                                                                         AGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC  >  SRR4302534.4879171/1‑94 (MQ=60)

                                                                                         AGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC  >  SRR4302534.386294/1‑94 (MQ=60)

CACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC  >  NC_000913/3483814‑3483996

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`