Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,500,011	G→A	R12Q (CGG→CAG)	b3372 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,500,011	0	G	A	100.0%	921.9 / NA	235	R12Q (CGG→CAG)	b3372	hypothetical protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (126/109); total (126/109)

Only 100 of 243 total aligned reads displayed.

ATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCGGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGTTCGCGC  >  NC_000913/3499921‑3500100

  atTAATCCCTCGCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTg                                                                                       <  1:2253475/93‑1 (MQ=255)

   ttAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGc                                                                                      <  2:3798716/93‑1 (MQ=255)

    tAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGcc                                                                                     >  2:5106407/1‑93 (MQ=255)

    tAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGcc                                                                                     <  1:2062873/93‑1 (MQ=255)

     aaTCCCTCTCCCGGCCCGTCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCt                                                                                    <  1:1063488/93‑1 (MQ=255)

       tCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTAt                                                                                  <  1:5001841/93‑1 (MQ=255)

         ccTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTg                                                                                <  2:2044298/93‑1 (MQ=255)

         ccTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTg                                                                                >  1:6464784/1‑93 (MQ=255)

         ccTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTg                                                                                >  1:2707738/1‑93 (MQ=255)

          ctctCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGa                                                                               >  2:45906/1‑93 (MQ=255)

          ctctCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGa                                                                               <  1:5721726/93‑1 (MQ=255)

           tctcCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGaa                                                                              <  2:3893920/93‑1 (MQ=255)

           tctcCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGaa                                                                              <  1:2482064/93‑1 (MQ=255)

             tcCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAaca                                                                            <  1:5376851/93‑1 (MQ=255)

               ccggcccggcAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTATACCTGCGGCCACCAGCAGCTGCCTATTGAACACg                                                                          >  1:903319/1‑93 (MQ=255)

                cggcccggcAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGc                                                                         >  1:1139180/1‑93 (MQ=255)

                cggcccggcAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGc                                                                         >  1:1543609/1‑93 (MQ=255)

                 ggcccggcAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCa                                                                        <  2:1842867/93‑1 (MQ=255)

                 ggcccggcAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCa                                                                        >  2:6168338/1‑93 (MQ=255)

                  gcccggcAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGGTGCCTATTGAACAAGcct                                                                       >  1:1934069/1‑91 (MQ=255)

                  gcccggcAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCAt                                                                       <  2:4132297/93‑1 (MQ=255)

                  gcccggcAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCAt                                                                       >  1:3392424/1‑93 (MQ=255)

                   cccggcAACGGGCCGGATTTACGCAAGGAGTTATCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCAtt                                                                      >  1:3086552/1‑93 (MQ=255)

                   cccggcAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCAtt                                                                      <  2:3976174/93‑1 (MQ=255)

                    ccggcAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCAatt                                                                     >  1:2462099/1‑93 (MQ=255)

                     cggcAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTc                                                                    <  1:5762798/93‑1 (MQ=255)

                     cggcAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTc                                                                    >  1:5547265/1‑93 (MQ=255)

                       gcAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGt                                                                  >  2:3578917/1‑93 (MQ=255)

                         aaCGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGa                                                                >  1:3594836/1‑93 (MQ=255)

                          aCGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGAt                                                               <  1:3826144/93‑1 (MQ=255)

                            gggCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGc                                                             >  1:3305759/1‑93 (MQ=255)

                              gCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCaa                                                           <  2:304198/93‑1 (MQ=255)

                              gCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCaa                                                           <  1:1495125/93‑1 (MQ=255)

                              gCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCaa                                                           <  2:4872896/93‑1 (MQ=255)

                                cGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGc                                                         >  2:2904226/1‑93 (MQ=255)

                                cGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGc                                                         >  2:1217734/1‑93 (MQ=255)

                                cGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGc                                                         <  1:4848404/93‑1 (MQ=255)

                                cGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGc                                                         <  2:6371219/93‑1 (MQ=255)

                                 ggATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGGTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCg                                                        >  1:5914683/1‑93 (MQ=255)

                                  gATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGa                                                       <  2:4328807/93‑1 (MQ=255)

                                  gATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGa                                                       >  1:1672744/1‑93 (MQ=255)

                                  gATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGa                                                       >  2:908709/1‑93 (MQ=255)

                                  gATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGa                                                       <  2:1619477/93‑1 (MQ=255)

                                   aTTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAg                                                      >  1:3291073/1‑93 (MQ=255)

                                    tttACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGc                                                     >  1:5141412/1‑93 (MQ=255)

                                    tttACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGc                                                     <  1:4445949/93‑1 (MQ=255)

                                          cAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGtt                                               <  1:2020575/93‑1 (MQ=255)

                                          cAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGtt                                               >  2:1544411/1‑93 (MQ=255)

                                           aaGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTa                                              >  1:2194080/1‑93 (MQ=255)

                                           aaGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTa                                              >  2:5767296/1‑93 (MQ=255)

                                            aGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTac                                             <  2:6152057/93‑1 (MQ=255)

                                            aGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTac                                             <  1:2337338/93‑1 (MQ=255)

                                            aGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTac                                             <  1:2823310/93‑1 (MQ=255)

                                               aGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTacgac                                          <  1:800737/93‑1 (MQ=255)

                                                gTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTacgacg                                         >  2:592288/1‑93 (MQ=255)

                                                  tACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGc                                       >  1:1828638/1‑93 (MQ=255)

                                                   aCCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCa                                      <  2:1510763/93‑1 (MQ=255)

                                                    cccGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCAt                                     <  2:1905244/93‑1 (MQ=255)

                                                      cGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCg                                   >  1:4221363/1‑93 (MQ=255)

                                                      cGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCg                                   >  2:4631312/1‑93 (MQ=255)

                                                        aTGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGaa                                 >  1:837959/1‑93 (MQ=255)

                                                        aTGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGaa                                 >  2:564666/1‑93 (MQ=255)

                                                            aaaCAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAAttt                             >  2:4021499/1‑93 (MQ=255)

                                                            aaaCAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAAttt                             >  2:4828386/1‑93 (MQ=255)

                                                            aaaCAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAAttt                             <  1:4678432/93‑1 (MQ=255)

                                                            aaaCAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAAttt                             >  1:5080891/1‑93 (MQ=255)

                                                             aaCAGGTATGTTTACCTGCGGCAACGAGCAGCTTCCTATTGAACACGCATTTCGTAATGCAAGCGAGATGGGTTGAGACGGGGTCGAAATTTg                            >  1:6160935/1‑93 (MQ=255)

                                                              aCAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAACTTTgg                           >  2:820653/1‑93 (MQ=255)

                                                              aCAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTgg                           <  2:2810226/93‑1 (MQ=255)

                                                              aCAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTgg                           >  2:2124800/1‑93 (MQ=255)

                                                               cAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTggg                          <  2:5433288/93‑1 (MQ=255)

                                                               cAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTggg                          <  2:106399/93‑1 (MQ=255)

                                                                aGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTgggg                         <  2:5548295/93‑1 (MQ=255)

                                                                aGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTgggg                         >  1:1525273/1‑93 (MQ=255)

                                                                 ggTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGc                        <  2:632652/93‑1 (MQ=255)

                                                                 ggTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGc                        >  2:1386569/1‑93 (MQ=255)

                                                                 ggTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGc                        <  2:2139027/93‑1 (MQ=255)

                                                                  gTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCg                       <  2:3528865/93‑1 (MQ=255)

                                                                     tGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTc                    <  2:5618596/93‑1 (MQ=255)

                                                                     tGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTc                    <  2:5336969/93‑1 (MQ=255)

                                                                       tttACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGc                  <  1:4080503/93‑1 (MQ=255)

                                                                         tcccTGCGACCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGccc                <  1:5466679/91‑1 (MQ=255)

                                                                           ccTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGc              >  2:164872/1‑93 (MQ=255)

                                                                           ccTGCGGCCACCAGCAGCTGCCTATTGAACACACATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGc              >  1:5230599/1‑93 (MQ=255)

                                                                            cTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCa             >  1:6208068/1‑93 (MQ=255)

                                                                             tGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCAc            <  2:1865361/93‑1 (MQ=255)

                                                                              gCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCAcg           <  2:430581/93‑1 (MQ=255)

                                                                               cGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCAcgc          >  2:5702969/1‑93 (MQ=255)

                                                                                ggCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGCCGCCCGCAcgcg         >  1:3735631/1‑93 (MQ=255)

                                                                                 gCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGt        <  2:1224569/93‑1 (MQ=255)

                                                                                 gCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGt        <  1:2953411/93‑1 (MQ=255)

                                                                                 gCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGt        <  1:4501660/93‑1 (MQ=255)

                                                                                 gCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGt        >  2:2569954/1‑93 (MQ=255)

                                                                                 gCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGt        >  2:3691398/1‑93 (MQ=255)

                                                                                   caccaGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGTTc      >  1:3533729/1‑93 (MQ=255)

                                                                                   caccaGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGTTc      <  1:160555/93‑1 (MQ=255)

                                                                                   caccaGCAGCTGCCTATTGAACACGCAATTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGTTc      <  2:3216017/93‑1 (MQ=255)

                                                                                    accaGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGTTcg     >  2:5755442/1‑93 (MQ=255)

                                                                                     ccaGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGTTcgc    >  1:5619493/1‑93 (MQ=255)

                                                                                       agcagcTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGTTCgcgc  >  1:2048797/1‑93 (MQ=255)

ATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCGGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGTTCGCGC  >  NC_000913/3499921‑3500100

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCGGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGTTCGCGCCGG  >  NC_000913/3499918‑3500103

GGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCA                                                                                              <  SRR4302534.1703166/94‑1 (MQ=60)

GGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCA                                                                                              <  SRR4302534.3393608/94‑1 (MQ=60)

GGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCCATGAAAACAGGTATGTTTACCTGCGGCCACCAGCA                                                                                              >  SRR4302534.1310132/1‑94 (MQ=60)

 GAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAG                                                                                             <  SRR4302534.1873291/94‑1 (MQ=60)

 GAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAG                                                                                             >  SRR4302534.1851422/1‑94 (MQ=60)

 GAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAG                                                                                             <  SRR4302534.324886/94‑1 (MQ=60)

   ATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCT                                                                                           <  SRR4302534.3555432/94‑1 (MQ=60)

   ATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCT                                                                                           <  SRR4302534.4912307/94‑1 (MQ=60)

     ATTAATCCCTCGCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGC                                                                                         <  SRR4302534.2313208/94‑1 (MQ=60)

       TAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCT                                                                                       <  SRR4302534.2116815/94‑1 (MQ=60)

       TAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCT                                                                                       >  SRR4302534.3893797/1‑94 (MQ=60)

        AATCCCTCTCCCGGCCCGTCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTA                                                                                      <  SRR4302534.1091053/94‑1 (MQ=60)

        AATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTA                                                                                      <  SRR4302534.457521/94‑1 (MQ=60)

        AATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTA                                                                                      <  SRR4302534.208947/94‑1 (MQ=60)

        AATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGGTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTA                                                                                      >  SRR4302534.2657320/1‑94 (MQ=60)

        AACCCCTCTCCCGGACCGGCAACGGGCCGAATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTA                                                                                      <  SRR4302534.5185856/94‑1 (MQ=60)

          TCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATT                                                                                    <  SRR4302534.5137064/94‑1 (MQ=60)

           CCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTG                                                                                   >  SRR4302534.2779236/1‑94 (MQ=60)

           CCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTG                                                                                   >  SRR4302534.6419947/1‑94 (MQ=60)

           CCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTG                                                                                   >  SRR4302534.6638909/1‑94 (MQ=60)

             CTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAA                                                                                 <  SRR4302534.5876740/94‑1 (MQ=60)

              TCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAAC                                                                                >  SRR4302534.5468225/1‑94 (MQ=60)

              TCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAAC                                                                                >  SRR4302534.3066568/1‑94 (MQ=60)

              TCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAAC                                                                                <  SRR4302534.2547981/94‑1 (MQ=60)

                TCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAGAACAGGTATGTTTACCTGCGGCCACCCGCAGCTGCCTATTGAACAC                                                                              >  SRR4302534.2389134/1‑94 (MQ=60)

                TCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACAC                                                                              <  SRR4302534.5521724/94‑1 (MQ=60)

                TCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACAC                                                                              >  SRR4302534.1564725/1‑94 (MQ=60)

                 CCCGGCCCGGCAACGGGCCGGGTTTACGCAAGGAGGTACCCGATGAAAAAAGGAATGTTTACCTGCGGGCACCAGAAGCTGCCTATTGAACACG                                                                             >  SRR4302534.3502397/1‑94 (MQ=60)

                 CCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTATACCTGCGGCCACCAGCAGCTGCCTATTGAACACG                                                                             >  SRR4302534.926254/1‑94 (MQ=60)

                  CCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGC                                                                            >  SRR4302534.1168979/1‑94 (MQ=60)

                  CCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGC                                                                            >  SRR4302534.1584067/1‑94 (MQ=60)

                    GGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGGTGCCTATTGAACAagcct                                                                          >  SRR4302534.1984645/1‑89 (MQ=60)

                    GGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCAT                                                                          >  SRR4302534.3483426/1‑94 (MQ=60)

                     GCCCGGCAACGGGCCGGATTTACGCAAGGAGTTATCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATT                                                                         >  SRR4302534.3167658/1‑94 (MQ=60)

                      CCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTT                                                                        <  SRR4302534.78749/94‑1 (MQ=60)

                      CCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTT                                                                        >  SRR4302534.5861783/1‑94 (MQ=60)

                      CCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCAATT                                                                        >  SRR4302534.2527507/1‑94 (MQ=60)

                       CCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTC                                                                       >  SRR4302534.5697002/1‑94 (MQ=60)

                       CCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTC                                                                       <  SRR4302534.3524664/94‑1 (MQ=60)

                        CGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCG                                                                      <  SRR4302534.5919130/94‑1 (MQ=60)

                         GGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGT                                                                     <  SRR4302534.5818354/94‑1 (MQ=60)

                          GCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTCCCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTG                                                                    <  SRR4302534.1614032/94‑1 (MQ=60)

                          GCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTG                                                                    <  SRR4302534.1012676/94‑1 (MQ=60)

                          GCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTG                                                                    <  SRR4302534.6062777/94‑1 (MQ=60)

                           CAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGA                                                                   >  SRR4302534.3691522/1‑94 (MQ=60)

                           CAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGA                                                                   <  SRR4302534.4487274/94‑1 (MQ=60)

                           CAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGA                                                                   >  SRR4302534.1824311/1‑94 (MQ=60)

                             ACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATG                                                                 <  SRR4302534.3928927/94‑1 (MQ=60)

                             ACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATG                                                                 <  SRR4302534.2947079/94‑1 (MQ=60)

                              CGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGC                                                                >  SRR4302534.2332782/1‑94 (MQ=60)

                              CGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGC                                                                >  SRR4302534.3394017/1‑94 (MQ=60)

                                GGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAA                                                              <  SRR4302534.2801264/94‑1 (MQ=60)

                                GGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAA                                                              >  SRR4302534.2531957/1‑94 (MQ=60)

                                 GCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAG                                                             <  SRR4302534.1534461/94‑1 (MQ=60)

                                 GCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAG                                                             >  SRR4302534.1805506/1‑94 (MQ=60)

                                  CCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGC                                                            <  SRR4302534.6517574/94‑1 (MQ=60)

                                   CGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCG                                                           <  SRR4302534.4979933/94‑1 (MQ=60)

                                   CGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGGTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCG                                                           >  SRR4302534.6075296/1‑94 (MQ=60)

                                    GGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGA                                                          >  SRR4302534.1716271/1‑94 (MQ=60)

                                    GGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGA                                                          >  SRR4302534.4880511/1‑94 (MQ=60)

                                    GGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGA                                                          <  SRR4302534.5052981/94‑1 (MQ=60)

                                     GATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAG                                                         >  SRR4302534.3378812/1‑94 (MQ=60)

                                      ATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGC                                                        >  SRR4302534.5280167/1‑94 (MQ=60)

                                       TTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCT                                                       <  SRR4302534.4566071/94‑1 (MQ=60)

                                          ACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGG                                                    <  SRR4302534.2202751/94‑1 (MQ=60)

                                           CGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGT                                                   <  SRR4302534.3780303/94‑1 (MQ=60)

                                           CGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGT                                                   >  SRR4302534.2160670/1‑94 (MQ=60)

                                             CAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTA                                                 <  SRR4302534.2073442/94‑1 (MQ=60)

                                             CAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTA                                                 >  SRR4302534.2252103/1‑94 (MQ=60)

                                             CAAGGAGATACCCGAGGAAAACAGGTATGTTTACCTGCGGCCACCAGAAGCGGCCTATTGAGCACGCACTTCGTGATACAAGCGAGCTGGGTTA                                                 <  SRR4302534.2267445/94‑1 (MQ=60)

                                              AAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTAC                                                >  SRR4302534.10952/1‑94 (MQ=60)

                                              AAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTAC                                                <  SRR4302534.2066354/94‑1 (MQ=60)

                                               AGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACG                                               <  SRR4302534.2399365/94‑1 (MQ=60)

                                               AGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACG                                               >  SRR4302534.5736402/1‑94 (MQ=60)

                                               AGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACG                                               <  SRR4302534.2897535/94‑1 (MQ=60)

                                               AGAAGTTACCCGATGAAAACAGGTACGTTTCCCTGCGGCCACCACCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACG                                               <  SRR4302534.6128172/94‑1 (MQ=60)

                                                  AGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACG                                            >  SRR4302534.1628132/1‑94 (MQ=60)

                                                  AGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACG                                            <  SRR4302534.820850/94‑1 (MQ=60)

                                                  AGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACG                                            >  SRR4302534.4223525/1‑94 (MQ=60)

                                                    TTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGC                                          >  SRR4302534.4608781/1‑94 (MQ=60)

                                                    TTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGC                                          >  SRR4302534.1876203/1‑94 (MQ=60)

                                                     TACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCA                                         >  SRR4302534.558772/1‑94 (MQ=60)

                                                      ACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCAT                                        >  SRR4302534.842126/1‑94 (MQ=60)

                                                      ACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCAT                                        <  SRR4302534.4783327/94‑1 (MQ=60)

                                                       CCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATC                                       <  SRR4302534.2273186/94‑1 (MQ=60)

                                                        CCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCG                                      >  SRR4302534.4335160/1‑94 (MQ=60)

                                                         CGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGA                                     >  SRR4302534.5499842/1‑94 (MQ=60)

                                                         CGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGA                                     <  SRR4302534.1558871/94‑1 (MQ=60)

                                                         CGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGA                                     <  SRR4302534.839591/94‑1 (MQ=60)

                                                          GATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAA                                    >  SRR4302534.859069/1‑94 (MQ=60)

                                                           ATGAAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAA                                   >  SRR4302534.5332359/1‑94 (MQ=60)

                                                              AAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTT                                >  SRR4302534.5884564/1‑94 (MQ=60)

                                                              AAAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTT                                >  SRR4302534.5218035/1‑94 (MQ=60)

                                                               AAACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTG                               <  SRR4302534.4805449/94‑1 (MQ=60)

                                                               AAACAGGTATGTTTACCTGCGGCAACGAGCAGCTTCCTATTGAACACGCATTTCGTAATGCAAGCGAGATGGGTTGAGACGGGGTCGAAATTTG                               >  SRR4302534.6328512/1‑94 (MQ=44)

                                                                AACAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGG                              >  SRR4302534.4082868/1‑94 (MQ=60)

                                                                  CAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGG                            >  SRR4302534.3467406/1‑94 (MQ=60)

                                                                  CAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGG                            >  SRR4302534.1981420/1‑94 (MQ=60)

                                                                  CAGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGG                            >  SRR4302534.1565317/1‑94 (MQ=60)

                                                                  AAGGTAGGTTTACCTGCGGCCACCAGCAGGTGCCTATTGAACACGCATTTCGTTATGCAAGCGAGCTGGGTTACGGCGGCATCGAAATTTGGGG                            <  SRR4302534.2106045/94‑1 (MQ=60)

                                                                   AGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGC                           <  SRR4302534.2411196/94‑1 (MQ=60)

                                                                   AGGTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGC                           >  SRR4302534.1567345/1‑94 (MQ=60)

                                                                     GTATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGG                         >  SRR4302534.2085164/1‑94 (MQ=60)

                                                                      TATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGT                        <  SRR4302534.561074/94‑1 (MQ=60)

                                                                       ATGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTC                       <  SRR4302534.877898/94‑1 (MQ=60)

                                                                        TGTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCG                      <  SRR4302534.1407917/94‑1 (MQ=60)

                                                                         GTTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGC                     <  SRR4302534.2744368/94‑1 (MQ=60)

                                                                          TTTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCC                    <  SRR4302534.4190037/94‑1 (MQ=60)

                                                                           TTACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCC                   <  SRR4302534.3779494/94‑1 (MQ=60)

                                                                            TCCCTGCGACCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCG                  <  SRR4302534.5614037/94‑1 (MQ=60)

                                                                            TACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCG                  >  SRR4302534.564536/1‑94 (MQ=60)

                                                                            TACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCG                  >  SRR4302534.3676237/1‑94 (MQ=60)

                                                                             ACCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGC                 <  SRR4302534.52788/94‑1 (MQ=60)

                                                                             ACCTGCGGCCACCAGCAGCTGCCTATTGAACACACATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGC                 >  SRR4302534.5371811/1‑94 (MQ=60)

                                                                              CCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCA                >  SRR4302534.6376834/1‑94 (MQ=60)

                                                                              CCTGCGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGCGATGCAAGCGAGCTGGGTTACGACGGCATCGAGATTTGGGGCGGTCGCCCGCA                >  SRR4302534.6376833/1‑94 (MQ=60)

                                                                                  CGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCG            <  SRR4302534.3310910/94‑1 (MQ=60)

                                                                                  CGGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGCCGCCCGCACGCG            >  SRR4302534.3835978/1‑94 (MQ=60)

                                                                                   GGCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGT           <  SRR4302534.3005732/94‑1 (MQ=60)

                                                                                    GCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGTT          <  SRR4302534.3030838/94‑1 (MQ=60)

                                                                                    GCCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGTT          <  SRR4302534.4623515/94‑1 (MQ=60)

                                                                                     CCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGTTC         >  SRR4302534.3628786/1‑94 (MQ=60)

                                                                                     CCACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGTTC         <  SRR4302534.4016159/94‑1 (MQ=60)

                                                                                      CACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGTTCG        <  SRR4302534.164762/94‑1 (MQ=60)

                                                                                      CACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGTTCG        >  SRR4302534.3383895/1‑94 (MQ=60)

                                                                                      CACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGTTCA        <  SRR4302534.1653331/94‑1 (MQ=60)

                                                                                       ACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGTTCGC       >  SRR4302534.5771535/1‑94 (MQ=60)

                                                                                       ACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGTTCGC       >  SRR4302534.3296180/1‑94 (MQ=60)

                                                                                       ACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGTTCGC       >  SRR4302534.5152531/1‑94 (MQ=60)

                                                                                       ACCAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGGTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGTTCGT       >  SRR4302534.6228511/1‑94 (MQ=60)

                                                                                         CAGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGTTCGCGC     >  SRR4302534.2102345/1‑94 (MQ=60)

                                                                                          AGCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGTTCGCGCC    >  SRR4302534.5114678/1‑94 (MQ=60)

                                                                                           GCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGTTCGCGCCG   <  SRR4302534.1689597/94‑1 (MQ=60)

                                                                                           GCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGTTCGCGCCG   <  SRR4302534.4890073/94‑1 (MQ=60)

                                                                                           GCAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGTTCGCGCCG   <  SRR4302534.3037640/94‑1 (MQ=60)

                                                                                            CAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGTTCGCGCCGG  >  SRR4302534.4547905/1‑94 (MQ=60)

                                                                                            CAGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGTTCGCGCCGG  >  SRR4302534.195400/1‑94 (MQ=60)

GGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCGGCTGCCTATTGAACACGCATTTCGTGATGCAAGCGAGCTGGGTTACGACGGCATCGAAATTTGGGGCGGTCGCCCGCACGCGTTCGCGCCGG  >  NC_000913/3499918‑3500103

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`