Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,506,318 |
(C)5→6 |
coding (1134/1227 nt) |
yhfW ← |
putative mutase |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,506,313 | 1 | . | C | 98.2%
| 754.1
/ 4.1
| 222 | coding (1139/1227 nt) | yhfW | putative mutase |
| Reads supporting (aligned to +/- strand): ref base . (2/2); new base C (117/101); total (119/103) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.78e-01 |
Only 100 of 259 total aligned reads displayed.
AAACTCATAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AG‑CCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGG > NC_000913/3506221‑3506399
|
aaCTCATAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AG‑c < 2:4361453/93‑1 (MQ=255)
aaCTCATAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AG‑c > 1:6154283/1‑93 (MQ=255)
aCTCATAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AG‑cc < 2:2415020/93‑1 (MQ=255)
aCTCATAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTCGCGCGCGGAAAAATTCACACACGGT‑AG‑cc > 1:1396489/1‑93 (MQ=255)
cTCATAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AG‑cac > 1:5211482/1‑91 (MQ=255)
tCATAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AG‑cccc > 1:5714830/1‑93 (MQ=255)
tCATAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AG‑cccc > 1:4153554/1‑93 (MQ=255)
cATAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AG‑ccccc < 1:1598550/93‑1 (MQ=255)
cATAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AG‑ccccc < 1:1776015/93‑1 (MQ=255)
gggTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AG‑ccccccaca < 1:3025986/93‑5 (MQ=255)
gggTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AG‑ccccccaca > 2:196103/1‑89 (MQ=255)
gggTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AG‑ccccccaca > 2:5525476/1‑89 (MQ=255)
tgtCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACGATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCa > 2:427242/1‑93 (MQ=255)
gtCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAg > 2:2725670/1‑93 (MQ=255)
tctcCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGa < 1:754922/93‑1 (MQ=255)
tcCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGaaa > 1:2778521/1‑93 (MQ=255)
ccTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAg > 1:2073828/1‑93 (MQ=255)
ccTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAg > 2:1342751/1‑93 (MQ=255)
cTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGc > 1:5875923/1‑93 (MQ=255)
tGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCg > 2:2898357/1‑93 (MQ=255)
gCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCgt < 1:3775788/93‑1 (MQ=255)
gCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCgt < 1:2391188/93‑1 (MQ=255)
cAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCgtg < 2:690988/93‑1 (MQ=255)
cAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCgtg > 2:3588778/1‑93 (MQ=255)
aaaCCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCgtgg < 1:3605916/93‑1 (MQ=255)
aaaCCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCgtgg < 2:2380271/93‑1 (MQ=255)
aaaCCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCgtgg > 1:2511363/1‑93 (MQ=255)
aaCCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCgtggt < 1:1074107/93‑1 (MQ=255)
aaCCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCgtggt < 1:4600652/93‑1 (MQ=255)
aaCCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCgtggt > 1:4520238/1‑93 (MQ=255)
aCCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCgtggtg < 2:3317214/93‑1 (MQ=255)
aCCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCgtggtg > 2:3200084/1‑93 (MQ=255)
aCCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCgtggtg > 1:5158309/1‑93 (MQ=255)
ccGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGGAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTgc > 2:3381375/1‑93 (MQ=255)
ccGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTgc > 1:986726/1‑93 (MQ=255)
ggagggagGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAAC‑CCCCCACATCAGAAAGCGTGGTgcgc > 1:4003635/1‑93 (MQ=255)
gagggaggAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGca > 2:4507280/1‑93 (MQ=255)
gagggaggAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGGGGTGCGca > 1:3476131/1‑93 (MQ=255)
agggaggAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGcac < 1:2326147/93‑1 (MQ=255)
gggaggAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGcaca > 2:2582362/1‑93 (MQ=255)
gggaggAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGcaca > 1:6276114/1‑93 (MQ=255)
ggaggaAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCacac > 1:3492697/1‑93 (MQ=255)
ggaggaAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCacac < 1:6139223/93‑1 (MQ=255)
gaggaAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACAcc < 2:487098/93‑1 (MQ=255)
ggaAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGa > 2:3103973/1‑93 (MQ=255)
ggaAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGa > 1:3266757/1‑93 (MQ=255)
ggaAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGa < 1:1134941/93‑1 (MQ=255)
ggaAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGa > 1:4775535/1‑93 (MQ=255)
gaaagaaaAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAg > 1:1739692/1‑93 (MQ=255)
aaaaaaaagaGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGc < 1:5693079/93‑1 (MQ=255)
aagaaaagaGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCt > 1:1364497/1‑93 (MQ=255)
gaaaagaGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGc > 1:386020/1‑93 (MQ=255)
aagaGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGGAAGCGTGGTGCGCACACCGAGCTGCGTa > 1:2536817/1‑93 (MQ=255)
aagaGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTa > 1:4315583/1‑93 (MQ=255)
aagaGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTa > 1:895245/1‑93 (MQ=255)
agagCGACCATTTTGTGGCGGTGGCGCGCAGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAg < 2:37229/93‑1 (MQ=255)
gCGACCATTTTGTGGCGGTGGCGCGCTGAAAAATTCACACACCGT‑AGCCCCCCCCATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGa < 2:3621160/93‑1 (MQ=255)
gCGACCATTTTGTGGCGGTGGCGCGCGGGAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGa < 2:1621057/93‑1 (MQ=255)
aCCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGatca > 2:3263698/1‑93 (MQ=255)
aTTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATcc > 2:2168129/1‑93 (MQ=255)
ttttGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATccc > 2:4142980/1‑93 (MQ=255)
ttGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCtt < 2:6279964/93‑1 (MQ=255)
tgtgGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTg > 1:2652098/1‑93 (MQ=255)
gtggcggtggcgCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGc < 2:5168012/93‑1 (MQ=255)
gtggccgtagcgCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGc < 2:5671971/93‑1 (MQ=255)
tggcggtggcgCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCt < 2:6013464/93‑1 (MQ=255)
tggcggtggcgCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCt < 1:1034312/93‑1 (MQ=255)
tggcggtggcgCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCt < 1:22530/93‑1 (MQ=255)
cggtggcgCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGAt < 2:3960574/93‑1 (MQ=255)
gtggcgCGCGGAAAAATTCACACACGGTAAC‑CCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATaa > 1:3123988/1‑93 (MQ=255)
gtggcgCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATaa > 1:5641059/1‑93 (MQ=255)
ggcgCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAAc > 2:3910160/1‑93 (MQ=255)
ggcgCGCGGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAAc < 2:118079/93‑1 (MQ=255)
cgcgcgGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCa < 1:298051/93‑1 (MQ=255)
gcgcgGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAg > 2:90230/1‑93 (MQ=255)
cgcgGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGc > 2:6135806/1‑93 (MQ=255)
gcgGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCa < 1:6383629/93‑1 (MQ=255)
cgGAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCAc < 2:5352538/93‑1 (MQ=255)
gAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTg > 2:5010704/1‑93 (MQ=255)
gAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTg < 1:5115297/93‑1 (MQ=255)
gAAAAATTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTg < 2:4751888/93‑1 (MQ=255)
aaaaaTTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTgg < 2:2535739/93‑1 (MQ=255)
aaaaTTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGc > 1:548224/1‑93 (MQ=255)
aaaaTTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGc < 2:4700066/93‑1 (MQ=255)
aaaTTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGca > 1:1896836/1‑93 (MQ=255)
aaTTCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGcac < 1:3528863/93‑1 (MQ=255)
ttCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGcacca > 1:5100822/1‑93 (MQ=255)
ttCACACACGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGcacca > 2:953559/1‑93 (MQ=255)
ccacacGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACtt < 2:1281788/92‑1 (MQ=255)
acacacGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACtt < 2:1596131/93‑1 (MQ=255)
acacGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTcg > 2:4398499/1‑93 (MQ=255)
acacGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTcg > 1:5389788/1‑93 (MQ=255)
cacGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTcgc < 2:1836037/93‑1 (MQ=255)
cacGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTcgc > 1:5770979/1‑93 (MQ=255)
acGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAATCAGCACTGGCACCACTTcgcg < 1:4089285/93‑1 (MQ=255)
acGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTcgcg > 1:1437973/1‑93 (MQ=255)
acGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTcgcg > 2:5419496/1‑93 (MQ=255)
cGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGNACNCCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCgg < 1:4903425/93‑1 (MQ=255)
cGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCgg < 2:2543300/93‑1 (MQ=255)
cGGT‑AGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCgg > 1:4257094/1‑93 (MQ=255)
|
AAACTCATAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AG‑CCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGG > NC_000913/3506221‑3506399
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TCATAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AG‑CCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTATGGTGGCTG > NC_000913/3506225‑3506411
|
TCATAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AG‑CCCCC < SRR4302534.1793556/94‑1 (MQ=60)
TCATAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AG‑CCCCC > SRR4302534.371201/1‑94 (MQ=60)
TCATAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AG‑CCCCA < SRR4302534.3610786/94‑1 (MQ=60)
CATAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AG‑CCCCC‑C < SRR4302534.1822137/94‑1 (MQ=60)
CATAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AG‑CCCCC‑C < SRR4302534.1640318/94‑1 (MQ=60)
CATAGGCTGTCTCCTGCAAACCGGAGGGAGAAAAGAAAAGAGCGACCATTTGGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AG‑CCCCC‑C < SRR4302534.4847397/94‑1 (MQ=60)
TAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AG‑CCCCCcac > SRR4302534.5240366/1‑91 (MQ=60)
TAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AG‑CCCCCcac < SRR4302534.1110336/94‑4 (MQ=60)
AGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACA < SRR4302534.4226515/94‑1 (MQ=60)
GGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACAT < SRR4302534.3105297/94‑1 (MQ=60)
GGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACAT > SRR4302534.5845085/1‑94 (MQ=60)
GGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATC > SRR4302534.5894857/1‑94 (MQ=60)
GGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATC < SRR4302534.2013322/94‑1 (MQ=60)
GGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATC > SRR4302534.192799/1‑94 (MQ=60)
GTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCA < SRR4302534.5526299/94‑1 (MQ=60)
TGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGGAAAATTCACACACGGT‑AGCCCCCC‑ACATCAG > SRR4302534.1416515/1‑94 (MQ=60)
TGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAG > SRR4302534.1713927/1‑94 (MQ=60)
GTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGA > SRR4302534.5259750/1‑94 (MQ=60)
gaTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AG‑CCCCCAACATCAGAA < SRR4302534.6462491/92‑1 (MQ=60)
TCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAA < SRR4302534.773634/94‑1 (MQ=60)
CTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAA > SRR4302534.2851603/1‑94 (MQ=60)
CTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAA > SRR4302534.2303366/1‑94 (MQ=60)
CTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAA > SRR4302534.5281813/1‑94 (MQ=60)
CTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAA > SRR4302534.1403128/1‑94 (MQ=60)
TCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAG > SRR4302534.2128100/1‑94 (MQ=60)
TCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAG > SRR4302534.356858/1‑94 (MQ=60)
CCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGC > SRR4302534.6035448/1‑94 (MQ=60)
CTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCG < SRR4302534.3851328/94‑1 (MQ=60)
TGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGT > SRR4302534.396995/1‑94 (MQ=60)
GCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTG < SRR4302534.4667425/94‑1 (MQ=60)
GCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTG < SRR4302534.2454737/94‑1 (MQ=60)
GCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTG < SRR4302534.3877160/94‑1 (MQ=60)
GCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTG < SRR4302534.3069696/94‑1 (MQ=60)
CAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGG > SRR4302534.2578038/1‑94 (MQ=60)
AAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGT > SRR4302534.4642685/1‑94 (MQ=60)
AAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGT < SRR4302534.3702883/94‑1 (MQ=60)
AAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGT < SRR4302534.885281/94‑1 (MQ=60)
AAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGG > SRR4302534.2051514/1‑94 (MQ=60)
AACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTG < SRR4302534.4725515/94‑1 (MQ=60)
AACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTG > SRR4302534.5297393/1‑94 (MQ=60)
AACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTG < SRR4302534.1101983/94‑1 (MQ=60)
ACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGC > SRR4302534.2130499/1‑94 (MQ=60)
ACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGC > SRR4302534.1011946/1‑94 (MQ=60)
CGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAAC‑CCCCC‑ACATCAGAAAGCGTGGTGCGC > SRR4302534.4110835/1‑94 (MQ=60)
CGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGC < SRR4302534.5017855/94‑1 (MQ=60)
CGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGC < SRR4302534.4439016/94‑1 (MQ=60)
GGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCA < SRR4302534.4695932/94‑1 (MQ=60)
GGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGGGGTGCGCA > SRR4302534.3569568/1‑94 (MQ=60)
GAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCAC > SRR4302534.5405152/1‑94 (MQ=60)
AGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACA < SRR4302534.2387871/94‑1 (MQ=60)
AGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACA < SRR4302534.6332408/94‑1 (MQ=60)
AGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACA > SRR4302534.6446003/1‑94 (MQ=60)
GGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACAC > SRR4302534.3958060/1‑94 (MQ=60)
GGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACAC > SRR4302534.3586583/1‑94 (MQ=60)
GGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACC < SRR4302534.6306208/94‑1 (MQ=60)
GAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCG < SRR4302534.5226287/94‑1 (MQ=60)
AGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGA > SRR4302534.4905216/1‑94 (MQ=60)
AGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGA > SRR4302534.3353758/1‑94 (MQ=60)
GGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAG < SRR4302534.1164608/94‑1 (MQ=60)
GGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAG < SRR4302534.583588/94‑1 (MQ=60)
GGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAG > SRR4302534.1784868/1‑94 (MQ=60)
AAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCT < SRR4302534.2676862/94‑1 (MQ=60)
AAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCT > SRR4302534.1400441/1‑94 (MQ=60)
AAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCT < SRR4302534.2085509/94‑1 (MQ=60)
AAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCT > SRR4302534.3005221/1‑94 (MQ=60)
AAAAAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCT < SRR4302534.5847281/94‑1 (MQ=60)
AAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTG > SRR4302534.2430788/1‑94 (MQ=60)
AGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGC > SRR4302534.395898/1‑94 (MQ=60)
AAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGGAAGCGTGGTGCGCACACCGAGCTGCGTA > SRR4302534.2604130/1‑94 (MQ=60)
AAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTA > SRR4302534.4432456/1‑94 (MQ=60)
AAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTA > SRR4302534.917934/1‑94 (MQ=60)
AAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAACCGTGGTGCGCACACCGAGCTGCGTT > SRR4302534.5715924/1‑94 (MQ=60)
AAGAGCGACCATTTTGTGGCGGTTGCGCGCGGAAAAATTCACACACCGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGGGCTGCGTAG > SRR4302534.3686530/1‑94 (MQ=60)
AGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGC < SRR4302534.3580845/94‑1 (MQ=60)
AGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGC < SRR4302534.6043944/94‑1 (MQ=60)
GAGCGACCATTGTGTGGCGGTGCCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCG < SRR4302534.480800/94‑1 (MQ=60)
CGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATC < SRR4302534.5239471/94‑1 (MQ=60)
CGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATC > SRR4302534.1329400/1‑94 (MQ=60)
CGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGAGC > SRR4302534.5702416/1‑94 (MQ=60)
ACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCAT > SRR4302534.802705/1‑94 (MQ=60)
ACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCAT > SRR4302534.441813/1‑94 (MQ=60)
TTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTT < SRR4302534.3587687/94‑1 (MQ=60)
TTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTT < SRR4302534.55641/94‑1 (MQ=60)
TTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTT > SRR4302534.2805631/1‑94 (MQ=60)
TTTGTGGCGGTGACGCGCGCAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTT < SRR4302534.3268071/94‑1 (MQ=60)
TTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTG > SRR4302534.2722237/1‑94 (MQ=60)
TGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGC > SRR4302534.2370465/1‑94 (MQ=60)
TGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGC > SRR4302534.1440833/1‑94 (MQ=60)
TGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTG < SRR4302534.5999920/94‑1 (MQ=60)
TGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTG < SRR4302534.1061004/94‑1 (MQ=60)
TGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTG < SRR4302534.23127/94‑1 (MQ=60)
TGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTG > SRR4302534.1563719/1‑94 (MQ=60)
TGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTG < SRR4302534.5808815/94‑1 (MQ=60)
GCGGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGAT < SRR4302534.2583725/94‑1 (MQ=60)
GGTGGCGCGCGGAAAAATTCACACACGGTAAC‑CCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAA > SRR4302534.3206121/1‑94 (MQ=60)
GGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAA > SRR4302534.5793742/1‑94 (MQ=60)
GGTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAA > SRR4302534.3206120/1‑94 (MQ=60)
GTGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAA > SRR4302534.1068710/1‑94 (MQ=60)
TGGCGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAAC > SRR4302534.4320468/1‑94 (MQ=60)
tgcgctcggaaaaagtcacaacctgtagcaCCCC‑ACATCAGAAAGCGTGGGGCGCACAGCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACC < SRR4302534.383576/64‑1 (MQ=60)
CGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAG < SRR4302534.305757/94‑1 (MQ=60)
CGCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAG > SRR4302534.4186668/1‑94 (MQ=60)
GCGCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGC < SRR4302534.4492096/94‑1 (MQ=60)
GCGCGGAAAAATTCACACACGGT‑AG‑CCCCCGACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGC < SRR4302534.2685958/94‑1 (MQ=60)
GCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCAC < SRR4302534.6220648/94‑1 (MQ=60)
GCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCAC < SRR4302534.6556072/94‑1 (MQ=60)
GCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCAC > SRR4302534.5855574/1‑94 (MQ=60)
GCGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCAC > SRR4302534.1019229/1‑94 (MQ=60)
CGGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACT < SRR4302534.2530125/94‑1 (MQ=60)
GGAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTG < SRR4302534.2485303/94‑1 (MQ=60)
GAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGG < SRR4302534.589080/94‑1 (MQ=60)
GAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGG < SRR4302534.647959/94‑1 (MQ=60)
GAAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGG < SRR4302534.5253343/94‑1 (MQ=60)
AAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGC > SRR4302534.561748/1‑94 (MQ=60)
AAAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGC < SRR4302534.1733009/94‑1 (MQ=60)
AAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCA > SRR4302534.1946305/1‑94 (MQ=60)
AAAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCA > SRR4302534.2744759/1‑94 (MQ=60)
AAATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCAC > SRR4302534.6373934/1‑94 (MQ=60)
AATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACC < SRR4302534.3623780/94‑1 (MQ=60)
ATTCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCA > SRR4302534.5238500/1‑94 (MQ=60)
TCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACT < SRR4302534.5303668/94‑1 (MQ=60)
TCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACT < SRR4302534.1622864/94‑1 (MQ=60)
TCACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACT < SRR4302534.4169095/94‑1 (MQ=60)
CACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCCCTGGCACCACTT < SRR4302534.3408512/94‑1 (MQ=60)
ACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTC > SRR4302534.1889368/1‑94 (MQ=60)
ACACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTC > SRR4302534.23667/1‑94 (MQ=60)
CACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCG > SRR4302534.5534934/1‑94 (MQ=60)
CACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCG < SRR4302534.426762/94‑1 (MQ=60)
CACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCG < SRR4302534.3089917/94‑1 (MQ=60)
ACACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGC > SRR4302534.5927536/1‑94 (MQ=60)
CACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCG > SRR4302534.1475829/1‑94 (MQ=60)
ACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAATCAGCACTGGCACCACTTCGCGG < SRR4302534.4199124/94‑1 (MQ=60)
ACGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGG > SRR4302534.4372013/1‑94 (MQ=60)
CGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGNACNCCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGG < SRR4302534.5036362/94‑1 (MQ=60)
CGGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGG < SRR4302534.6306450/94‑1 (MQ=60)
GGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGT > SRR4302534.1082086/1‑94 (MQ=60)
GGT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACAGAGCTGCGTAGCGATCCTCCCTTGCTGATAAACCAGAACTGGCACCACTTCGCGGGC > SRR4302534.6333902/1‑94 (MQ=60)
GT‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTA < SRR4302534.2065011/94‑1 (MQ=60)
T‑AGCCCCCC‑ACATCAGAACGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTAT < SRR4302534.250147/94‑1 (MQ=60)
T‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTAT > SRR4302534.339933/1‑94 (MQ=60)
T‑AGCCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTAT < SRR4302534.4127989/94‑1 (MQ=60)
agcCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTATG < SRR4302534.2689369/91‑1 (MQ=60)
gcCCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTATGG < SRR4302534.3978554/92‑1 (MQ=60)
C‑CCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGGATGGT > SRR4302534.738068/1‑94 (MQ=60)
CCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTATGGTG < SRR4302534.3409907/94‑1 (MQ=60)
CCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTATGGTG < SRR4302534.6023775/94‑1 (MQ=60)
CCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTATGGTG < SRR4302534.1577704/94‑1 (MQ=60)
CCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTATGGTGG < SRR4302534.1983772/94‑1 (MQ=60)
CCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTATGGTGG > SRR4302534.4638043/1‑94 (MQ=60)
CCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTATGGTGGC > SRR4302534.5449511/1‑94 (MQ=60)
CC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTATGGTGGCT < SRR4302534.2823596/94‑1 (MQ=60)
CC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTATGGTGGCT > SRR4302534.3173478/1‑94 (MQ=60)
CC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTATGGTGGCT < SRR4302534.1505450/94‑1 (MQ=60)
C‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTATGGTGGCTG > SRR4302534.1323049/1‑94 (MQ=60)
C‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTATGGTGGCTG < SRR4302534.2758726/94‑1 (MQ=60)
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TCATAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGT‑AG‑CCCCC‑ACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTATGGTGGCTG > NC_000913/3506225‑3506411
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |