Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 884 257.2 12958910 96.9% 12557183 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,506,318 (C)5→6 coding (1134/1227 nt) yhfW ← putative mutase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,506,3131.C98.2% 754.1 / 4.1 222coding (1139/1227 nt)yhfWputative mutase
Reads supporting (aligned to +/- strand):  ref base . (2/2);  new base C (117/101);  total (119/103)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.78e-01

Only 100 of 259 total aligned reads displayed.

AAACTCATAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGG  >  NC_000913/3506221‑3506399
                                                                                              |                                                                                      
 aaCTCATAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGc                                                                                       <  2:4361453/93‑1 (MQ=255)
 aaCTCATAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGc                                                                                       >  1:6154283/1‑93 (MQ=255)
  aCTCATAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGcc                                                                                      <  2:2415020/93‑1 (MQ=255)
  aCTCATAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTCGCGCGCGGAAAAATTCACACACGGTAGcc                                                                                      >  1:1396489/1‑93 (MQ=255)
   cTCATAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGcac                                                                                     >  1:5211482/1‑91 (MQ=255)
    tCATAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGcccc                                                                                    >  1:5714830/1‑93 (MQ=255)
    tCATAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGcccc                                                                                    >  1:4153554/1‑93 (MQ=255)
     cATAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGccccc                                                                                   <  1:1598550/93‑1 (MQ=255)
     cATAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGccccc                                                                                   <  1:1776015/93‑1 (MQ=255)
         gggTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGccccccaca                                                                               <  1:3025986/93‑5 (MQ=255)
         gggTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGccccccaca                                                                               >  2:196103/1‑89 (MQ=255)
         gggTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGccccccaca                                                                               >  2:5525476/1‑89 (MQ=255)
            tgtCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACGATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCa                                                                             >  2:427242/1‑93 (MQ=255)
             gtCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAg                                                                            >  2:2725670/1‑93 (MQ=255)
              tctcCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGa                                                                           <  1:754922/93‑1 (MQ=255)
                tcCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGaaa                                                                         >  1:2778521/1‑93 (MQ=255)
                 ccTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAg                                                                        >  1:2073828/1‑93 (MQ=255)
                 ccTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAg                                                                        >  2:1342751/1‑93 (MQ=255)
                  cTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGc                                                                       >  1:5875923/1‑93 (MQ=255)
                   tGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCg                                                                      >  2:2898357/1‑93 (MQ=255)
                    gCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCgt                                                                     <  1:3775788/93‑1 (MQ=255)
                    gCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCgt                                                                     <  1:2391188/93‑1 (MQ=255)
                     cAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCgtg                                                                    <  2:690988/93‑1 (MQ=255)
                     cAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCgtg                                                                    >  2:3588778/1‑93 (MQ=255)
                      aaaCCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCgtgg                                                                   <  1:3605916/93‑1 (MQ=255)
                      aaaCCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCgtgg                                                                   <  2:2380271/93‑1 (MQ=255)
                      aaaCCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCgtgg                                                                   >  1:2511363/1‑93 (MQ=255)
                       aaCCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCgtggt                                                                  <  1:1074107/93‑1 (MQ=255)
                       aaCCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCgtggt                                                                  <  1:4600652/93‑1 (MQ=255)
                       aaCCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCgtggt                                                                  >  1:4520238/1‑93 (MQ=255)
                        aCCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCgtggtg                                                                 <  2:3317214/93‑1 (MQ=255)
                        aCCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCgtggtg                                                                 >  2:3200084/1‑93 (MQ=255)
                        aCCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCgtggtg                                                                 >  1:5158309/1‑93 (MQ=255)
                         ccGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGGAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTgc                                                                >  2:3381375/1‑93 (MQ=255)
                         ccGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTgc                                                                >  1:986726/1‑93 (MQ=255)
                           ggagggagGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAACCCCCCACATCAGAAAGCGTGGTgcgc                                                              >  1:4003635/1‑93 (MQ=255)
                            gagggaggAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGca                                                             >  2:4507280/1‑93 (MQ=255)
                            gagggaggAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGGGGTGCGca                                                             >  1:3476131/1‑93 (MQ=255)
                             agggaggAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGcac                                                            <  1:2326147/93‑1 (MQ=255)
                              gggaggAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGcaca                                                           >  2:2582362/1‑93 (MQ=255)
                              gggaggAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGcaca                                                           >  1:6276114/1‑93 (MQ=255)
                               ggaggaAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCacac                                                          >  1:3492697/1‑93 (MQ=255)
                               ggaggaAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCacac                                                          <  1:6139223/93‑1 (MQ=255)
                                gaggaAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACAcc                                                         <  2:487098/93‑1 (MQ=255)
                                  ggaAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGa                                                       >  2:3103973/1‑93 (MQ=255)
                                  ggaAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGa                                                       >  1:3266757/1‑93 (MQ=255)
                                  ggaAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGa                                                       <  1:1134941/93‑1 (MQ=255)
                                  ggaAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGa                                                       >  1:4775535/1‑93 (MQ=255)
                                   gaaagaaaAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAg                                                      >  1:1739692/1‑93 (MQ=255)
                                    aaaaaaaagaGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGc                                                     <  1:5693079/93‑1 (MQ=255)
                                     aagaaaagaGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCt                                                    >  1:1364497/1‑93 (MQ=255)
                                       gaaaagaGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGc                                                  >  1:386020/1‑93 (MQ=255)
                                          aagaGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGGAAGCGTGGTGCGCACACCGAGCTGCGTa                                               >  1:2536817/1‑93 (MQ=255)
                                          aagaGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTa                                               >  1:4315583/1‑93 (MQ=255)
                                          aagaGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTa                                               >  1:895245/1‑93 (MQ=255)
                                           agagCGACCATTTTGTGGCGGTGGCGCGCAGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAg                                              <  2:37229/93‑1 (MQ=255)
                                              gCGACCATTTTGTGGCGGTGGCGCGCTGAAAAATTCACACACCGTAGCCCCCCCCATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGa                                           <  2:3621160/93‑1 (MQ=255)
                                              gCGACCATTTTGTGGCGGTGGCGCGCGGGAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGa                                           <  2:1621057/93‑1 (MQ=255)
                                                 aCCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGatca                                        >  2:3263698/1‑93 (MQ=255)
                                                    aTTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATcc                                     >  2:2168129/1‑93 (MQ=255)
                                                     ttttGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATccc                                    >  2:4142980/1‑93 (MQ=255)
                                                       ttGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCtt                                  <  2:6279964/93‑1 (MQ=255)
                                                        tgtgGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTg                                 >  1:2652098/1‑93 (MQ=255)
                                                         gtggcggtggcgCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGc                                <  2:5168012/93‑1 (MQ=255)
                                                         gtggccgtagcgCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGc                                <  2:5671971/93‑1 (MQ=255)
                                                          tggcggtggcgCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCt                               <  2:6013464/93‑1 (MQ=255)
                                                          tggcggtggcgCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCt                               <  1:1034312/93‑1 (MQ=255)
                                                          tggcggtggcgCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCt                               <  1:22530/93‑1 (MQ=255)
                                                             cggtggcgCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGAt                            <  2:3960574/93‑1 (MQ=255)
                                                               gtggcgCGCGGAAAAATTCACACACGGTAACCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATaa                          >  1:3123988/1‑93 (MQ=255)
                                                               gtggcgCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATaa                          >  1:5641059/1‑93 (MQ=255)
                                                                 ggcgCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAAc                        >  2:3910160/1‑93 (MQ=255)
                                                                 ggcgCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAAc                        <  2:118079/93‑1 (MQ=255)
                                                                   cgcgcgGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCa                      <  1:298051/93‑1 (MQ=255)
                                                                    gcgcgGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAg                     >  2:90230/1‑93 (MQ=255)
                                                                     cgcgGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGc                    >  2:6135806/1‑93 (MQ=255)
                                                                      gcgGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCa                   <  1:6383629/93‑1 (MQ=255)
                                                                       cgGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCAc                  <  2:5352538/93‑1 (MQ=255)
                                                                         gAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTg                >  2:5010704/1‑93 (MQ=255)
                                                                         gAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTg                <  1:5115297/93‑1 (MQ=255)
                                                                         gAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTg                <  2:4751888/93‑1 (MQ=255)
                                                                          aaaaaTTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTgg               <  2:2535739/93‑1 (MQ=255)
                                                                           aaaaTTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGc              >  1:548224/1‑93 (MQ=255)
                                                                           aaaaTTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGc              <  2:4700066/93‑1 (MQ=255)
                                                                            aaaTTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGca             >  1:1896836/1‑93 (MQ=255)
                                                                             aaTTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGcac            <  1:3528863/93‑1 (MQ=255)
                                                                               ttCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGcacca          >  1:5100822/1‑93 (MQ=255)
                                                                               ttCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGcacca          >  2:953559/1‑93 (MQ=255)
                                                                                  ccacacGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACtt       <  2:1281788/92‑1 (MQ=255)
                                                                                  acacacGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACtt       <  2:1596131/93‑1 (MQ=255)
                                                                                    acacGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTcg     >  2:4398499/1‑93 (MQ=255)
                                                                                    acacGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTcg     >  1:5389788/1‑93 (MQ=255)
                                                                                     cacGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTcgc    <  2:1836037/93‑1 (MQ=255)
                                                                                     cacGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTcgc    >  1:5770979/1‑93 (MQ=255)
                                                                                      acGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAATCAGCACTGGCACCACTTcgcg   <  1:4089285/93‑1 (MQ=255)
                                                                                      acGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTcgcg   >  1:1437973/1‑93 (MQ=255)
                                                                                      acGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTcgcg   >  2:5419496/1‑93 (MQ=255)
                                                                                       cGGTAGCCCCCCACATCAGAAAGCGTGGTGCGNACNCCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCgg  <  1:4903425/93‑1 (MQ=255)
                                                                                       cGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCgg  <  2:2543300/93‑1 (MQ=255)
                                                                                       cGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCgg  >  1:4257094/1‑93 (MQ=255)
                                                                                              |                                                                                      
AAACTCATAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGG  >  NC_000913/3506221‑3506399

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TCATAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTATGGTGGCTG  >  NC_000913/3506225‑3506411
                                                                                               |                                                                                              
TCATAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCC                                                                                                <  SRR4302534.1793556/94‑1 (MQ=60)
TCATAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCC                                                                                                >  SRR4302534.371201/1‑94 (MQ=60)
TCATAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCA                                                                                                <  SRR4302534.3610786/94‑1 (MQ=60)
 CATAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCC                                                                                              <  SRR4302534.1822137/94‑1 (MQ=60)
 CATAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCC                                                                                              <  SRR4302534.1640318/94‑1 (MQ=60)
 CATAGGCTGTCTCCTGCAAACCGGAGGGAGAAAAGAAAAGAGCGACCATTTGGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCC                                                                                              <  SRR4302534.4847397/94‑1 (MQ=60)
   TAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCcac                                                                                             >  SRR4302534.5240366/1‑91 (MQ=60)
   TAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCcac                                                                                             <  SRR4302534.1110336/94‑4 (MQ=60)
    AGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACA                                                                                            <  SRR4302534.4226515/94‑1 (MQ=60)
     GGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACAT                                                                                           <  SRR4302534.3105297/94‑1 (MQ=60)
     GGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACAT                                                                                           >  SRR4302534.5845085/1‑94 (MQ=60)
      GGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATC                                                                                          >  SRR4302534.5894857/1‑94 (MQ=60)
      GGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATC                                                                                          <  SRR4302534.2013322/94‑1 (MQ=60)
      GGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATC                                                                                          >  SRR4302534.192799/1‑94 (MQ=60)
       GTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCA                                                                                         <  SRR4302534.5526299/94‑1 (MQ=60)
        TGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGGAAAATTCACACACGGTAGCCCCCCACATCAG                                                                                        >  SRR4302534.1416515/1‑94 (MQ=60)
        TGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAG                                                                                        >  SRR4302534.1713927/1‑94 (MQ=60)
         GTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGA                                                                                       >  SRR4302534.5259750/1‑94 (MQ=60)
          gaTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCAACATCAGAA                                                                                      <  SRR4302534.6462491/92‑1 (MQ=60)
          TCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAA                                                                                      <  SRR4302534.773634/94‑1 (MQ=60)
           CTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAA                                                                                     >  SRR4302534.2851603/1‑94 (MQ=60)
           CTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAA                                                                                     >  SRR4302534.2303366/1‑94 (MQ=60)
           CTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAA                                                                                     >  SRR4302534.5281813/1‑94 (MQ=60)
           CTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAA                                                                                     >  SRR4302534.1403128/1‑94 (MQ=60)
            TCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAG                                                                                    >  SRR4302534.2128100/1‑94 (MQ=60)
            TCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAG                                                                                    >  SRR4302534.356858/1‑94 (MQ=60)
             CCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGC                                                                                   >  SRR4302534.6035448/1‑94 (MQ=60)
              CTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCG                                                                                  <  SRR4302534.3851328/94‑1 (MQ=60)
               TGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGT                                                                                 >  SRR4302534.396995/1‑94 (MQ=60)
                GCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTG                                                                                <  SRR4302534.4667425/94‑1 (MQ=60)
                GCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTG                                                                                <  SRR4302534.2454737/94‑1 (MQ=60)
                GCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTG                                                                                <  SRR4302534.3877160/94‑1 (MQ=60)
                GCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTG                                                                                <  SRR4302534.3069696/94‑1 (MQ=60)
                 CAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGG                                                                               >  SRR4302534.2578038/1‑94 (MQ=60)
                  AAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGT                                                                              >  SRR4302534.4642685/1‑94 (MQ=60)
                  AAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGT                                                                              <  SRR4302534.3702883/94‑1 (MQ=60)
                  AAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGT                                                                              <  SRR4302534.885281/94‑1 (MQ=60)
                  AAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGG                                                                              >  SRR4302534.2051514/1‑94 (MQ=60)
                   AACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTG                                                                             <  SRR4302534.4725515/94‑1 (MQ=60)
                   AACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTG                                                                             >  SRR4302534.5297393/1‑94 (MQ=60)
                   AACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTG                                                                             <  SRR4302534.1101983/94‑1 (MQ=60)
                    ACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGC                                                                            >  SRR4302534.2130499/1‑94 (MQ=60)
                    ACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGC                                                                            >  SRR4302534.1011946/1‑94 (MQ=60)
                      CGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAACCCCCCACATCAGAAAGCGTGGTGCGC                                                                          >  SRR4302534.4110835/1‑94 (MQ=60)
                      CGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGC                                                                          <  SRR4302534.5017855/94‑1 (MQ=60)
                      CGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGC                                                                          <  SRR4302534.4439016/94‑1 (MQ=60)
                       GGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCA                                                                         <  SRR4302534.4695932/94‑1 (MQ=60)
                       GGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGGGGTGCGCA                                                                         >  SRR4302534.3569568/1‑94 (MQ=60)
                        GAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCAC                                                                        >  SRR4302534.5405152/1‑94 (MQ=60)
                         AGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACA                                                                       <  SRR4302534.2387871/94‑1 (MQ=60)
                         AGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACA                                                                       <  SRR4302534.6332408/94‑1 (MQ=60)
                         AGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACA                                                                       >  SRR4302534.6446003/1‑94 (MQ=60)
                          GGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACAC                                                                      >  SRR4302534.3958060/1‑94 (MQ=60)
                          GGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACAC                                                                      >  SRR4302534.3586583/1‑94 (MQ=60)
                           GGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACC                                                                     <  SRR4302534.6306208/94‑1 (MQ=60)
                            GAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCG                                                                    <  SRR4302534.5226287/94‑1 (MQ=60)
                             AGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGA                                                                   >  SRR4302534.4905216/1‑94 (MQ=60)
                             AGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGA                                                                   >  SRR4302534.3353758/1‑94 (MQ=60)
                              GGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAG                                                                  <  SRR4302534.1164608/94‑1 (MQ=60)
                              GGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAG                                                                  <  SRR4302534.583588/94‑1 (MQ=60)
                              GGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAG                                                                  >  SRR4302534.1784868/1‑94 (MQ=60)
                                AAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCT                                                                <  SRR4302534.2676862/94‑1 (MQ=60)
                                AAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCT                                                                >  SRR4302534.1400441/1‑94 (MQ=60)
                                AAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCT                                                                <  SRR4302534.2085509/94‑1 (MQ=60)
                                AAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCT                                                                >  SRR4302534.3005221/1‑94 (MQ=60)
                                AAAAAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCT                                                                <  SRR4302534.5847281/94‑1 (MQ=60)
                                 AAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTG                                                               >  SRR4302534.2430788/1‑94 (MQ=60)
                                  AGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGC                                                              >  SRR4302534.395898/1‑94 (MQ=60)
                                     AAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGGAAGCGTGGTGCGCACACCGAGCTGCGTA                                                           >  SRR4302534.2604130/1‑94 (MQ=60)
                                     AAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTA                                                           >  SRR4302534.4432456/1‑94 (MQ=60)
                                     AAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTA                                                           >  SRR4302534.917934/1‑94 (MQ=60)
                                     AAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAACCGTGGTGCGCACACCGAGCTGCGTT                                                           >  SRR4302534.5715924/1‑94 (MQ=60)
                                      AAGAGCGACCATTTTGTGGCGGTTGCGCGCGGAAAAATTCACACACCGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGGGCTGCGTAG                                                          >  SRR4302534.3686530/1‑94 (MQ=60)
                                       AGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGC                                                         <  SRR4302534.3580845/94‑1 (MQ=60)
                                       AGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGC                                                         <  SRR4302534.6043944/94‑1 (MQ=60)
                                        GAGCGACCATTGTGTGGCGGTGCCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCG                                                        <  SRR4302534.480800/94‑1 (MQ=60)
                                           CGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATC                                                     <  SRR4302534.5239471/94‑1 (MQ=60)
                                           CGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATC                                                     >  SRR4302534.1329400/1‑94 (MQ=60)
                                           CGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGAGC                                                     >  SRR4302534.5702416/1‑94 (MQ=60)
                                             ACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCAT                                                   >  SRR4302534.802705/1‑94 (MQ=60)
                                             ACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCAT                                                   >  SRR4302534.441813/1‑94 (MQ=60)
                                                  TTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTT                                              <  SRR4302534.3587687/94‑1 (MQ=60)
                                                  TTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTT                                              <  SRR4302534.55641/94‑1 (MQ=60)
                                                  TTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTT                                              >  SRR4302534.2805631/1‑94 (MQ=60)
                                                  TTTGTGGCGGTGACGCGCGCAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTT                                              <  SRR4302534.3268071/94‑1 (MQ=60)
                                                   TTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTG                                             >  SRR4302534.2722237/1‑94 (MQ=60)
                                                    TGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGC                                            >  SRR4302534.2370465/1‑94 (MQ=60)
                                                    TGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGC                                            >  SRR4302534.1440833/1‑94 (MQ=60)
                                                      TGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTG                                          <  SRR4302534.5999920/94‑1 (MQ=60)
                                                      TGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTG                                          <  SRR4302534.1061004/94‑1 (MQ=60)
                                                      TGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTG                                          <  SRR4302534.23127/94‑1 (MQ=60)
                                                      TGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTG                                          >  SRR4302534.1563719/1‑94 (MQ=60)
                                                      TGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTG                                          <  SRR4302534.5808815/94‑1 (MQ=60)
                                                        GCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGAT                                        <  SRR4302534.2583725/94‑1 (MQ=60)
                                                          GGTGGCGCGCGGAAAAATTCACACACGGTAACCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAA                                      >  SRR4302534.3206121/1‑94 (MQ=60)
                                                          GGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAA                                      >  SRR4302534.5793742/1‑94 (MQ=60)
                                                          GGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAA                                      >  SRR4302534.3206120/1‑94 (MQ=60)
                                                           GTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAA                                     >  SRR4302534.1068710/1‑94 (MQ=60)
                                                            TGGCGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAAC                                    >  SRR4302534.4320468/1‑94 (MQ=60)
                                                              tgcgctcggaaaaagtcacaacctgtagcaCCCCACATCAGAAAGCGTGGGGCGCACAGCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACC                                   <  SRR4302534.383576/64‑1 (MQ=60)
                                                               CGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAG                                 <  SRR4302534.305757/94‑1 (MQ=60)
                                                               CGCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAG                                 >  SRR4302534.4186668/1‑94 (MQ=60)
                                                                GCGCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGC                                <  SRR4302534.4492096/94‑1 (MQ=60)
                                                                GCGCGGAAAAATTCACACACGGTAGCCCCCGACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGC                                <  SRR4302534.2685958/94‑1 (MQ=60)
                                                                  GCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCAC                              <  SRR4302534.6220648/94‑1 (MQ=60)
                                                                  GCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCAC                              <  SRR4302534.6556072/94‑1 (MQ=60)
                                                                  GCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCAC                              >  SRR4302534.5855574/1‑94 (MQ=60)
                                                                  GCGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCAC                              >  SRR4302534.1019229/1‑94 (MQ=60)
                                                                   CGGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACT                             <  SRR4302534.2530125/94‑1 (MQ=60)
                                                                    GGAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTG                            <  SRR4302534.2485303/94‑1 (MQ=60)
                                                                     GAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGG                           <  SRR4302534.589080/94‑1 (MQ=60)
                                                                     GAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGG                           <  SRR4302534.647959/94‑1 (MQ=60)
                                                                     GAAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGG                           <  SRR4302534.5253343/94‑1 (MQ=60)
                                                                      AAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGC                          >  SRR4302534.561748/1‑94 (MQ=60)
                                                                      AAAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGC                          <  SRR4302534.1733009/94‑1 (MQ=60)
                                                                       AAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCA                         >  SRR4302534.1946305/1‑94 (MQ=60)
                                                                       AAAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCA                         >  SRR4302534.2744759/1‑94 (MQ=60)
                                                                        AAATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCAC                        >  SRR4302534.6373934/1‑94 (MQ=60)
                                                                         AATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACC                       <  SRR4302534.3623780/94‑1 (MQ=60)
                                                                          ATTCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCA                      >  SRR4302534.5238500/1‑94 (MQ=60)
                                                                            TCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACT                    <  SRR4302534.5303668/94‑1 (MQ=60)
                                                                            TCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACT                    <  SRR4302534.1622864/94‑1 (MQ=60)
                                                                            TCACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACT                    <  SRR4302534.4169095/94‑1 (MQ=60)
                                                                             CACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCCCTGGCACCACTT                   <  SRR4302534.3408512/94‑1 (MQ=60)
                                                                              ACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTC                  >  SRR4302534.1889368/1‑94 (MQ=60)
                                                                              ACACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTC                  >  SRR4302534.23667/1‑94 (MQ=60)
                                                                               CACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCG                 >  SRR4302534.5534934/1‑94 (MQ=60)
                                                                               CACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCG                 <  SRR4302534.426762/94‑1 (MQ=60)
                                                                               CACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCG                 <  SRR4302534.3089917/94‑1 (MQ=60)
                                                                                ACACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGC                >  SRR4302534.5927536/1‑94 (MQ=60)
                                                                                 CACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCG               >  SRR4302534.1475829/1‑94 (MQ=60)
                                                                                  ACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAATCAGCACTGGCACCACTTCGCGG              <  SRR4302534.4199124/94‑1 (MQ=60)
                                                                                  ACGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGG              >  SRR4302534.4372013/1‑94 (MQ=60)
                                                                                   CGGTAGCCCCCCACATCAGAAAGCGTGGTGCGNACNCCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGG             <  SRR4302534.5036362/94‑1 (MQ=60)
                                                                                   CGGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGG             <  SRR4302534.6306450/94‑1 (MQ=60)
                                                                                    GGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGT            >  SRR4302534.1082086/1‑94 (MQ=60)
                                                                                    GGTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACAGAGCTGCGTAGCGATCCTCCCTTGCTGATAAACCAGAACTGGCACCACTTCGCGGGC            >  SRR4302534.6333902/1‑94 (MQ=60)
                                                                                     GTAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTA           <  SRR4302534.2065011/94‑1 (MQ=60)
                                                                                      TAGCCCCCCACATCAGAACGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTAT          <  SRR4302534.250147/94‑1 (MQ=60)
                                                                                      TAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTAT          >  SRR4302534.339933/1‑94 (MQ=60)
                                                                                      TAGCCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTAT          <  SRR4302534.4127989/94‑1 (MQ=60)
                                                                                        agcCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTATG         <  SRR4302534.2689369/91‑1 (MQ=60)
                                                                                         gcCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTATGG        <  SRR4302534.3978554/92‑1 (MQ=60)
                                                                                         CCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGGATGGT       >  SRR4302534.738068/1‑94 (MQ=60)
                                                                                           CCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTATGGTG      <  SRR4302534.3409907/94‑1 (MQ=60)
                                                                                           CCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTATGGTG      <  SRR4302534.6023775/94‑1 (MQ=60)
                                                                                           CCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTATGGTG      <  SRR4302534.1577704/94‑1 (MQ=60)
                                                                                            CCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTATGGTGG     <  SRR4302534.1983772/94‑1 (MQ=60)
                                                                                            CCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTATGGTGG     >  SRR4302534.4638043/1‑94 (MQ=60)
                                                                                             CCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTATGGTGGC    >  SRR4302534.5449511/1‑94 (MQ=60)
                                                                                              CCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTATGGTGGCT   <  SRR4302534.2823596/94‑1 (MQ=60)
                                                                                              CCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTATGGTGGCT   >  SRR4302534.3173478/1‑94 (MQ=60)
                                                                                              CCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTATGGTGGCT   <  SRR4302534.1505450/94‑1 (MQ=60)
                                                                                               CACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTATGGTGGCTG  >  SRR4302534.1323049/1‑94 (MQ=60)
                                                                                               CACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTATGGTGGCTG  <  SRR4302534.2758726/94‑1 (MQ=60)
                                                                                               |                                                                                              
TCATAGGGTGTCTCCTGCAAACCGGAGGGAGGAAAGAAAAGAGCGACCATTTTGTGGCGGTGGCGCGCGGAAAAATTCACACACGGTAGCCCCCACATCAGAAAGCGTGGTGCGCACACCGAGCTGCGTAGCGATCATCCCTTGCTGATAAACCAGCACTGGCACCACTTCGCGGGTATGGTGGCTG  >  NC_000913/3506225‑3506411

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: