Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,519,337	T→C	T92A (ACC→GCC)	yrfC ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,519,337	0	T	C	99.6%	941.9 / NA	269	T92A (ACC→GCC)	yrfC	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (124/144); minor base A (0/1); total (124/145)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 274 total aligned reads displayed.

GCGTTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGG  >  NC_000913/3519247‑3519426

gCGTTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCaa                                                                                         <  2:724689/93‑1 (MQ=255)

 cGTTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCaaa                                                                                        <  2:2836662/93‑1 (MQ=255)

 cGTTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCaaa                                                                                        <  2:3752130/93‑1 (MQ=255)

 cGTTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCaaa                                                                                        >  1:3268011/1‑93 (MQ=255)

  gTTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAAt                                                                                       >  1:776536/1‑93 (MQ=255)

  gTTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAAt                                                                                       >  2:265528/1‑93 (MQ=255)

   ttCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAAtt                                                                                      <  1:771243/93‑1 (MQ=255)

     cccTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGt                                                                                    >  2:1381774/1‑93 (MQ=255)

     cccTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGt                                                                                    >  2:1010196/1‑93 (MQ=255)

      ccTGCTGCCAGCTGATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTc                                                                                   <  1:2938775/93‑1 (MQ=255)

       ctgctgCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCg                                                                                  >  1:4155683/1‑93 (MQ=255)

        tgctgcCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGc                                                                                 >  2:4914680/1‑93 (MQ=255)

         gctgcCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCt                                                                                <  2:1716122/93‑1 (MQ=255)

         gctgcCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCt                                                                                <  1:5047809/93‑1 (MQ=255)

          ctgcCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTg                                                                               <  2:4725830/93‑1 (MQ=255)

           tgcCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTgg                                                                              >  2:2039359/1‑93 (MQ=255)

            gcCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGgc                                                                             >  2:1091268/1‑93 (MQ=255)

              cAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGgcgc                                                                           <  2:380865/93‑1 (MQ=255)

              cAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGgcgc                                                                           >  1:5887413/1‑93 (MQ=255)

                gCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTg                                                                         <  2:2877193/93‑1 (MQ=255)

                 cTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGc                                                                        <  1:2585278/93‑1 (MQ=255)

                  ttATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGcc                                                                       <  2:2124735/93‑1 (MQ=255)

                  ttATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGcc                                                                       <  1:3125354/93‑1 (MQ=255)

                  ttATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGcc                                                                       >  1:1542092/1‑93 (MQ=255)

                   tATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCg                                                                      <  1:4356387/93‑1 (MQ=255)

                     tCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGtt                                                                    <  1:5229530/93‑1 (MQ=255)

                       gTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGc                                                                  >  1:6057657/1‑93 (MQ=255)

                         tGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGa                                                                >  1:2132257/1‑93 (MQ=255)

                          gTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTTCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGaa                                                               <  1:5158843/93‑1 (MQ=255)

                          gTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGaa                                                               <  2:5766926/93‑1 (MQ=255)

                           tCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAAc                                                              <  2:4757625/93‑1 (MQ=255)

                            cAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACg                                                             <  2:5027356/93‑1 (MQ=255)

                             aGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGc                                                            <  2:789687/93‑1 (MQ=255)

                             aGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGC‑GGCCAATTTTCGCTGGCGCTGCCGGTGCGGACACt                                                           >  2:3582033/1‑93 (MQ=255)

                              gCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCt                                                           >  2:4775064/1‑93 (MQ=255)

                              gCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCt                                                           <  2:2229313/93‑1 (MQ=255)

                                cAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGt                                                         <  2:5689909/93‑1 (MQ=255)

                                 aGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGtt                                                        <  1:3384063/93‑1 (MQ=255)

                                  ggCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTc                                                       >  2:344365/1‑93 (MQ=255)

                                  ggCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTc                                                       >  2:4715912/1‑93 (MQ=255)

                                   gCGTGGTCGGGTAAAAGCGCCGCAAGTGCTTCCAGCGCAGATTGCAAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTcg                                                      <  2:5210207/93‑1 (MQ=255)

                                     gTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTcgcg                                                    >  1:3783136/1‑93 (MQ=255)

                                      tGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGt                                                   <  1:5403635/93‑1 (MQ=255)

                                      tGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGt                                                   >  2:1936459/1‑93 (MQ=255)

                                       gCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTa                                                  >  1:4145557/1‑93 (MQ=255)

                                       gCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTa                                                  >  2:2566483/1‑93 (MQ=255)

                                         tCGGGTAAAAGCGCCGCCAGTTCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAAc                                                >  2:5989584/1‑93 (MQ=255)

                                           ggggAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCCGATTGCAGCTGGCGCTGCCGTTGCGAACGCTGGTCGCGTAActg                                              >  1:2654595/1‑93 (MQ=255)

                                           gggTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAActg                                              >  1:3730008/1‑93 (MQ=255)

                                            ggTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAActgc                                             <  2:5927709/93‑1 (MQ=255)

                                             gTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAActgct                                            >  1:2399141/1‑93 (MQ=255)

                                              tAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAActgctg                                           <  1:4265383/93‑1 (MQ=255)

                                               aaaaGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGt                                          >  1:4479144/1‑93 (MQ=255)

                                                aaaGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGtt                                         <  2:3989293/93‑1 (MQ=255)

                                                aaaGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGtt                                         <  2:950038/93‑1 (MQ=255)

                                                aaaGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGtt                                         >  1:3016558/1‑93 (MQ=255)

                                                   gcgcCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCt                                      >  1:4597093/1‑93 (MQ=255)

                                                   gcgcCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCt                                      <  2:3637306/93‑1 (MQ=255)

                                                     gccgccAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTcc                                    <  1:3950732/93‑1 (MQ=255)

                                                     gccgccAGTGCTTCCAGCGCAGATTGCAAGTCGCGGGAAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTcc                                    <  2:4194365/93‑1 (MQ=255)

                                                        gccAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGc                                 >  2:2154001/1‑93 (MQ=255)

                                                         ccAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCa                                <  1:281730/93‑1 (MQ=255)

                                                          cAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCaa                               <  2:1553358/93‑1 (MQ=255)

                                                          cAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCaa                               <  1:1815198/93‑1 (MQ=255)

                                                          cAGTGCTTCCAGCGCAGATTGCAAGGCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCaa                               >  1:2193006/1‑93 (MQ=255)

                                                            gTGCTTCCGGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAAc                             >  1:6324566/1‑93 (MQ=255)

                                                            gTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAAc                             <  1:3549048/93‑1 (MQ=255)

                                                               cTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTg                          >  2:6023058/1‑93 (MQ=255)

                                                                 tCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGc                        <  1:4227146/93‑1 (MQ=255)

                                                                  ccAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCt                       <  2:6186212/93‑1 (MQ=255)

                                                                  ccAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCt                       <  2:203093/93‑1 (MQ=255)

                                                                   cAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCtt                      <  1:102237/93‑1 (MQ=255)

                                                                    agggcAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACTCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTc                     <  1:1222392/90‑1 (MQ=255)

                                                                     gcgcAGATTGCCCGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGGACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGGTTCg                    >  1:4793734/1‑93 (MQ=255)

                                                                     gcgcAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCg                    >  1:5586014/1‑93 (MQ=255)

                                                                     gcgcAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCg                    >  2:4649603/1‑93 (MQ=255)

                                                                      cgcATATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGt                   <  1:1617857/93‑1 (MQ=255)

                                                                       gcAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGtt                  >  1:94277/1‑93 (MQ=255)

                                                                       gcAGATTGCCAGGCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGtt                  <  2:527460/93‑1 (MQ=255)

                                                                        cAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTa                 <  1:4071683/93‑1 (MQ=255)

                                                                         aGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTAt                <  2:774265/93‑1 (MQ=255)

                                                                         aGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTAt                <  2:1186848/93‑1 (MQ=255)

                                                                          gATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTGCAGCAAACGTGGCTTCGTTATc               >  2:5471410/1‑93 (MQ=255)

                                                                          gATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATc               >  1:34575/1‑93 (MQ=255)

                                                                          gATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATc               >  2:4297835/1‑93 (MQ=255)

                                                                           aTTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCt              <  1:2002270/93‑1 (MQ=255)

                                                                            ttGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTg             <  1:4951285/93‑1 (MQ=255)

                                                                            ttGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTg             <  1:4861823/93‑1 (MQ=255)

                                                                             tGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGt            <  1:1065907/93‑1 (MQ=255)

                                                                              gCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTa           >  1:6194490/1‑93 (MQ=255)

                                                                              gCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTa           <  1:653899/93‑1 (MQ=255)

                                                                                cAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAg         >  2:1868795/1‑93 (MQ=255)

                                                                                 aGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGc        <  2:558339/93‑1 (MQ=255)

                                                                                  gTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCt       >  2:3893401/1‑93 (MQ=255)

                                                                                     gtgggCAAATTGTCGCTGGCGCTGCCGTTGAGAACGCAGTTCGCGTAACTGCTGTTGGTCTAGCAACCGTGGCTTAGTTATCTGTACTCTGCg    >  2:451662/3‑93 (MQ=255)

                                                                                     gcgGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCg    <  2:2433465/93‑1 (MQ=255)

                                                                                     gcgGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCg    >  1:3623041/1‑93 (MQ=255)

                                                                                     gcgGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCg    <  2:308042/93‑1 (MQ=255)

                                                                                      cgGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCgg   <  2:5036434/93‑1 (MQ=255)

                                                                                       gggCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCggg  <  1:1473772/93‑1 (MQ=255)

GCGTTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGG  >  NC_000913/3519247‑3519426

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCGTTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCG  >  NC_000913/3519247‑3519428

GCGTTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAA                                                                                          >  SRR4302534.3355056/1‑94 (MQ=60)

 CGTTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAAT                                                                                         >  SRR4302534.795885/1‑94 (MQ=60)

   TTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTG                                                                                       <  SRR4302534.790435/94‑1 (MQ=60)

    TCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGT                                                                                      >  SRR4302534.4242233/1‑94 (MQ=60)

      CCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCG                                                                                    >  SRR4302534.4267886/1‑94 (MQ=60)

      CCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCG                                                                                    >  SRR4302534.5006202/1‑94 (MQ=60)

      CCTGCTGCCAGCTGATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCG                                                                                    <  SRR4302534.3015901/94‑1 (MQ=60)

       CTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGC                                                                                   >  SRR4302534.3088839/1‑94 (MQ=60)

       CTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGC                                                                                   <  SRR4302534.1621286/94‑1 (MQ=60)

        TGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCT                                                                                  <  SRR4302534.2911422/94‑1 (MQ=60)

        TGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCT                                                                                  <  SRR4302534.1571751/94‑1 (MQ=60)

        TGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCT                                                                                  <  SRR4302534.351134/94‑1 (MQ=60)

         GCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTG                                                                                 <  SRR4302534.5184107/94‑1 (MQ=60)

          CTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAATCGCGTCCAGTGCTTCCAGGGCAGATTGGCAGTCGCGGGCAAATTGgtgcttt                                                                                <  SRR4302534.5906298/94‑8 (MQ=60)

          CTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGG                                                                                >  SRR4302534.6005026/1‑94 (MQ=60)

          CTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGG                                                                                <  SRR4302534.1894963/94‑1 (MQ=60)

           TGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGC                                                                               >  SRR4302534.3831868/1‑94 (MQ=60)

           TGACAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGC                                                                               >  SRR4302534.4165101/1‑94 (MQ=60)

             CCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGC                                                                             >  SRR4302534.6047264/1‑94 (MQ=60)

             CCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGC                                                                             >  SRR4302534.5622904/1‑94 (MQ=60)

              CAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCT                                                                            >  SRR4302534.4354904/1‑94 (MQ=60)

               AGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTG                                                                           >  SRR4302534.4358640/1‑94 (MQ=60)

                GCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGC                                                                          <  SRR4302534.5352832/94‑1 (MQ=60)

                GCTTATCGTTGTCAGCCAGGAGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGC                                                                          >  SRR4302534.6436210/1‑94 (MQ=60)

                 CTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCC                                                                         >  SRR4302534.1582512/1‑94 (MQ=60)

                 CTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCC                                                                         <  SRR4302534.2653716/94‑1 (MQ=60)

                  TTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCG                                                                        <  SRR4302534.3207520/94‑1 (MQ=60)

                  TTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCG                                                                        >  SRR4302534.327516/1‑94 (MQ=60)

                   TATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGT                                                                       >  SRR4302534.5501585/1‑94 (MQ=60)

                   TATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGT                                                                       <  SRR4302534.4473951/94‑1 (MQ=60)

                    ATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTT                                                                      <  SRR4302534.4304359/94‑1 (MQ=60)

                     TCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTG                                                                     <  SRR4302534.5370709/94‑1 (MQ=60)

                      CGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGC                                                                    >  SRR4302534.6222380/1‑94 (MQ=60)

                      CGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGC                                                                    <  SRR4302534.3458107/94‑1 (MQ=60)

                       GTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCG                                                                   <  SRR4302534.1011602/94‑1 (MQ=60)

                       GTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCG                                                                   >  SRR4302534.1300511/1‑94 (MQ=60)

                        TTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGA                                                                  >  SRR4302534.2188434/1‑94 (MQ=60)

                        TTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGA                                                                  <  SRR4302534.65456/94‑1 (MQ=60)

                          GTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTTCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAAC                                                                <  SRR4302534.5297941/94‑1 (MQ=60)

                          GTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAAC                                                                >  SRR4302534.681913/1‑94 (MQ=60)

                           TCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGTCAAATTGTCGCTGGCGCTGCCGTTGCGAACG                                                               <  SRR4302534.4468102/94‑1 (MQ=60)

                            CAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGC                                                              >  SRR4302534.3233939/1‑94 (MQ=60)

                             AGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCT                                                             <  SRR4302534.2739069/94‑1 (MQ=60)

                                CAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAATTTGTCGCTGGCGCTGCCGTTGCGAACGCTGTT                                                          <  SRR4302534.5285862/94‑1 (MQ=60)

                                CAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTT                                                          >  SRR4302534.492339/1‑94 (MQ=60)

                                CAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTT                                                          >  SRR4302534.4308381/1‑94 (MQ=60)

                                 AGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTC                                                         >  SRR4302534.2622327/1‑94 (MQ=60)

                                 AGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTC                                                         <  SRR4302534.3474796/94‑1 (MQ=60)

                                  GGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCG                                                        <  SRR4302534.4559455/94‑1 (MQ=60)

                                    CGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCG                                                      >  SRR4302534.3884709/1‑94 (MQ=60)

                                     GTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGT                                                     >  SRR4302534.4937327/1‑94 (MQ=60)

                                     GTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGCTCGCGT                                                     >  SRR4302534.4452702/1‑94 (MQ=60)

                                      TGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTA                                                    <  SRR4302534.2629196/94‑1 (MQ=60)

                                      TGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTA                                                    >  SRR4302534.4257440/1‑94 (MQ=60)

                                      TGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTA                                                    <  SRR4302534.2341260/94‑1 (MQ=60)

                                      TGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTA                                                    <  SRR4302534.5549065/94‑1 (MQ=60)

                                        GTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAAC                                                  >  SRR4302534.3810639/1‑94 (MQ=60)

                                         TCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGGGGAACT                                                 >  SRR4302534.1320364/1‑94 (MQ=60)

                                          CGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTG                                                <  SRR4302534.1604782/94‑1 (MQ=60)

                                          CGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTG                                                >  SRR4302534.1188009/1‑94 (MQ=60)

                                          CGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTG                                                >  SRR4302534.3830238/1‑94 (MQ=60)

                                          CGGGGAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCCGATTGCAGCTGGCGCTGCCGTTGCGAACGCTGGTCGCGTAACTG                                                >  SRR4302534.2724794/1‑94 (MQ=60)

                                           GGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGC                                               >  SRR4302534.3935575/1‑94 (MQ=60)

                                           GGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGC                                               >  SRR4302534.3778148/1‑94 (MQ=60)

                                           GGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTCGCGAATGCTGTTCTCGTAACAGC                                               >  SRR4302534.320511/1‑94 (MQ=60)

                                            GGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCT                                              >  SRR4302534.2462890/1‑94 (MQ=60)

                                            GGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCT                                              <  SRR4302534.3847945/94‑1 (MQ=60)

                                             GTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTG                                             <  SRR4302534.5275085/94‑1 (MQ=60)

                                              TAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGT                                            <  SRR4302534.4380603/94‑1 (MQ=60)

                                              TAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGT                                            >  SRR4302534.4600319/1‑94 (MQ=60)

                                               AAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTT                                           <  SRR4302534.885118/94‑1 (MQ=60)

                                               AAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTT                                           >  SRR4302534.3095526/1‑94 (MQ=60)

                                               AAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTT                                           <  SRR4302534.3447049/94‑1 (MQ=60)

                                                AAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTG                                          <  SRR4302534.4164588/94‑1 (MQ=60)

                                                 AAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTtgtggcggtactgctgttgt                                         >  SRR4302534.4674627/1‑74 (MQ=60)

                                                 AAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGC                                         <  SRR4302534.6057306/94‑1 (MQ=60)

                                                  AGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCT                                        >  SRR4302534.4721856/1‑94 (MQ=60)

                                                   GCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTC                                       >  SRR4302534.2216695/1‑94 (MQ=60)

                                                    CGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCC                                      <  SRR4302534.762570/94‑1 (MQ=60)

                                                    CGCCGCCAGCGCTTCCAGCGCAGATGGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCC                                      <  SRR4302534.1733476/94‑1 (MQ=60)

                                                     GCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCA                                     <  SRR4302534.4056497/94‑1 (MQ=60)

                                                     GCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCA                                     <  SRR4302534.3153578/94‑1 (MQ=60)

                                                     GCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCA                                     <  SRR4302534.795334/94‑1 (MQ=60)

                                                         CCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAA                                 >  SRR4302534.4218211/1‑94 (MQ=60)

                                                         CCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAA                                 <  SRR4302534.289008/94‑1 (MQ=60)

                                                         CCAGTGCTTCCAGCGCAGATTGCAAGGCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAA                                 >  SRR4302534.2250984/1‑94 (MQ=60)

                                                          CAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAA                                <  SRR4302534.1862367/94‑1 (MQ=60)

                                                           AGTGCTTTCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAAC                               <  SRR4302534.3090791/94‑1 (MQ=60)

                                                           AGTGCTTCCGGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAAC                               >  SRR4302534.6495442/1‑94 (MQ=60)

                                                           AGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAAC                               <  SRR4302534.1924287/94‑1 (MQ=60)

                                                           AGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAAC                               >  SRR4302534.2086571/1‑94 (MQ=60)

                                                           AGTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAAC                               <  SRR4302534.5090949/94‑1 (MQ=60)

                                                            GTGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACG                              <  SRR4302534.3644484/94‑1 (MQ=60)

                                                             TGCTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGT                             <  SRR4302534.2336858/94‑1 (MQ=60)

                                                               CTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGG                           >  SRR4302534.1794361/1‑94 (MQ=60)

                                                               CTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGG                           >  SRR4302534.4266876/1‑94 (MQ=60)

                                                               CTTCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGG                           <  SRR4302534.1002805/94‑1 (MQ=60)

                                                                 TCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCT                         <  SRR4302534.4341062/94‑1 (MQ=60)

                                                                 TCCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCT                         >  SRR4302534.1190377/1‑94 (MQ=60)

                                                                  CCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTT                        <  SRR4302534.3706540/94‑1 (MQ=60)

                                                                  CCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTT                        <  SRR4302534.4773809/94‑1 (MQ=60)

                                                                  CCAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTT                        <  SRR4302534.3672638/94‑1 (MQ=60)

                                                                   CAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTC                       <  SRR4302534.104971/94‑1 (MQ=60)

                                                                   CAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTC                       <  SRR4302534.570831/94‑1 (MQ=60)

                                                                   CAGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTC                       <  SRR4302534.1058718/94‑1 (MQ=60)

                                                                    AGGGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACTCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCG                      <  SRR4302534.1254582/94‑1 (MQ=60)

                                                                    AGCGCAGATTGCCCGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGGACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGGTTCG                      >  SRR4302534.4923890/1‑94 (MQ=60)

                                                                    AGCGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCG                      >  SRR4302534.5736980/1‑94 (MQ=60)

                                                                      CGCATATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTT                    <  SRR4302534.1660063/94‑1 (MQ=60)

                                                                      CGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTT                    <  SRR4302534.4700363/94‑1 (MQ=60)

                                                                      CGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTT                    >  SRR4302534.4766320/1‑94 (MQ=60)

                                                                      CGCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTT                    >  SRR4302534.96791/1‑94 (MQ=60)

                                                                       GCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTA                   >  SRR4302534.2560579/1‑94 (MQ=60)

                                                                       GCAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTA                   >  SRR4302534.2667306/1‑94 (MQ=60)

                                                                        CAGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTAT                  <  SRR4302534.4180939/94‑1 (MQ=60)

                                                                         AGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATC                 >  SRR4302534.5348366/1‑94 (MQ=60)

                                                                         AGATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATC                 >  SRR4302534.35485/1‑94 (MQ=60)

                                                                          GATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCT                <  SRR4302534.3504594/94‑1 (MQ=60)

                                                                          GATTGCCAGACGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCT                <  SRR4302534.2206742/94‑1 (MQ=60)

                                                                           ATTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTG               <  SRR4302534.2054686/94‑1 (MQ=60)

                                                                            TTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGT              <  SRR4302534.5085390/94‑1 (MQ=60)

                                                                            TTGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGT              <  SRR4302534.4993715/94‑1 (MQ=60)

                                                                             TGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTA             <  SRR4302534.6251473/94‑1 (MQ=60)

                                                                             TGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTA             >  SRR4302534.6363039/1‑94 (MQ=60)

                                                                             TGCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTA             <  SRR4302534.1093538/94‑1 (MQ=60)

                                                                              GCCAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAA            <  SRR4302534.669818/94‑1 (MQ=60)

                                                                                CAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGC          >  SRR4302534.6400244/1‑94 (MQ=60)

                                                                                CAGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGC          <  SRR4302534.6012148/94‑1 (MQ=60)

                                                                                 AGTCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCT         >  SRR4302534.3601538/1‑94 (MQ=60)

                                                                                   TCGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGC       >  SRR4302534.1724404/1‑94 (MQ=60)

                                                                                    CGCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCG      >  SRR4302534.3720442/1‑94 (MQ=60)

                                                                                     GCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGG     <  SRR4302534.2779120/94‑1 (MQ=60)

                                                                                     GCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGG     >  SRR4302534.6517417/1‑94 (MQ=60)

                                                                                     GCGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTGGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGG     <  SRR4302534.6218083/94‑1 (MQ=60)

                                                                                      CGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGG    >  SRR4302534.2934625/1‑94 (MQ=60)

                                                                                      CGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGG    <  SRR4302534.1369416/94‑1 (MQ=60)

                                                                                      CGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGG    >  SRR4302534.5129005/1‑94 (MQ=60)

                                                                                      CGGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGG    <  SRR4302534.949230/94‑1 (MQ=60)

                                                                                       GGGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGC   <  SRR4302534.1512544/94‑1 (MQ=60)

                                                                                        GGCAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCG  <  SRR4302534.864399/94‑1 (MQ=60)

GCGTTCCCTGCTGCCAGCTTATCGTTGTCAGCCAGGCGTGCTCGGGTAAAAGCGCCGCCAGTGCTTCCAGCGCAGATTGCCAGTCGCGGGTAAATTGTCGCTGGCGCTGCCGTTGCGAACGCTGTTCGCGTAACTGCTGTTGCTCCAGCAAACGTGGCTTCGTTATCTGTAAGCTGCGGGCG  >  NC_000913/3519247‑3519428

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`