Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,522,805	A→G	Y774C (TAC→TGC)	mrcA →	penicillin‑binding protein 1A

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,522,805	0	A	G	100.0%	888.4 / NA	253	Y774C (TAC→TGC)	mrcA	penicillin‑binding protein 1A
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (124/129); total (124/129)

Only 100 of 262 total aligned reads displayed.

TGACCTCGGTCTGGATTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTACGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGACGCCGC  >  NC_000913/3522715‑3522894

  aCCTCGGTCTGGATTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGaa                                                                                       <  2:4221055/93‑1 (MQ=255)

   ccTCGGTCTGGATTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAg                                                                                      <  2:6277479/93‑1 (MQ=255)

   ccTCGGTCTGGATTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAg                                                                                      <  1:3568766/93‑1 (MQ=255)

    cTCGGTCTGGATTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAgg                                                                                     >  2:2376641/1‑93 (MQ=255)

     tCGGTCTGGATTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGc                                                                                    >  2:5429624/1‑93 (MQ=255)

     tCGGTCTGGATTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGc                                                                                    >  1:2413327/1‑93 (MQ=255)

      cGGTCTGGATTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCg                                                                                   <  1:1271825/93‑1 (MQ=255)

       ggTCTGGATTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCgg                                                                                  <  1:3817043/93‑1 (MQ=255)

       ggTCTGGATTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGATGCGAaggagg                                                                                  >  2:186667/1‑93 (MQ=255)

         tCTGGATTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTg                                                                                >  2:5119347/1‑93 (MQ=255)

         tCTGGATTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGATg                                                                                <  1:1514132/93‑1 (MQ=255)

           tGGATTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGcc                                                                              <  2:5223993/93‑1 (MQ=255)

            ggATTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCa                                                                             >  2:644845/1‑93 (MQ=255)

              aTTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAag                                                                           <  1:3485630/93‑1 (MQ=255)

               ttGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAaga                                                                          <  2:2512391/93‑1 (MQ=255)

               ttGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAaga                                                                          <  1:1158096/93‑1 (MQ=255)

                 ggCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGt                                                                        <  2:4868086/93‑1 (MQ=255)

                 ggCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGt                                                                        <  2:3011714/93‑1 (MQ=255)

                   cTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGc                                                                      <  1:3308953/93‑1 (MQ=255)

                     ttGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGccc                                                                    <  2:574758/93‑1 (MQ=255)

                     ttGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGccc                                                                    >  2:4409850/1‑93 (MQ=255)

                     ttGATGATCACCGTCGTAATCTCGGTCATACAACGGCTGCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGccc                                                                    <  2:1900133/93‑1 (MQ=255)

                      tgatgaTCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCa                                                                   <  1:2566051/93‑1 (MQ=255)

                          gatCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCt                                                               >  1:1670117/1‑93 (MQ=255)

                           atCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTg                                                              >  1:4124294/1‑93 (MQ=255)

                            tCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGc                                                             <  2:6081635/93‑1 (MQ=255)

                            tCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGc                                                             >  2:3555906/1‑93 (MQ=255)

                             cACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCa                                                            >  1:1107993/1‑93 (MQ=255)

                             cACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCa                                                            >  1:435801/1‑93 (MQ=255)

                              aCCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCAt                                                           <  2:5815567/93‑1 (MQ=255)

                              aCCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCAt                                                           <  2:138158/93‑1 (MQ=255)

                               ccGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATg                                                          <  1:2542120/93‑1 (MQ=255)

                               ccGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATg                                                          <  2:1110600/93‑1 (MQ=255)

                               ccGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATg                                                          <  1:2493383/93‑1 (MQ=255)

                                cgtcgtAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATgg                                                         >  2:1449213/1‑93 (MQ=255)

                                cgtcgtAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATgg                                                         <  2:708010/93‑1 (MQ=255)

                                 gtcgtAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATggg                                                        <  1:4746655/93‑1 (MQ=255)

                                 gtcgtAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATggg                                                        >  2:2775604/1‑93 (MQ=255)

                                 gtcgtAATCTCGGTCATACAACCGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATggg                                                        >  2:6172365/1‑93 (MQ=255)

                                   cgtAATCTCGGTCATACAACGGCGTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTCCCAAGAGTGCCCAGCCTGCATGGGAc                                                      <  2:2053780/93‑1 (MQ=255)

                                    gtAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACg                                                     >  1:5350589/1‑93 (MQ=255)

                                       aTCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCtt                                                  <  1:5162887/93‑1 (MQ=255)

                                         ctcGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTtat                                                <  2:1714372/93‑1 (MQ=255)

                                           cGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTatat                                              >  2:5885580/1‑93 (MQ=255)

                                            ggTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATg                                             >  1:554407/1‑93 (MQ=255)

                                               cATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGaaa                                          >  2:113585/1‑93 (MQ=255)

                                               cATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGaaa                                          >  2:4007077/1‑93 (MQ=255)

                                                aTACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAg                                         >  2:1508231/1‑93 (MQ=255)

                                                 tACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGc                                        <  2:2155919/93‑1 (MQ=255)

                                                    aaCGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGCCGCTTATATGAAAGCCGt                                     >  1:6389373/1‑93 (MQ=255)

                                                    aaCGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGt                                     <  1:2341816/93‑1 (MQ=255)

                                                    aaCGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGt                                     <  1:6059723/93‑1 (MQ=255)

                                                        gCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCtt                                 >  2:2456145/1‑93 (MQ=255)

                                                        gCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCtt                                 <  1:5905715/93‑1 (MQ=255)

                                                         cTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTg                                <  2:6384893/93‑1 (MQ=255)

                                                          ttCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGa                               <  1:4266407/93‑1 (MQ=255)

                                                          ttCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGa                               <  2:4942828/93‑1 (MQ=255)

                                                          ttCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGa                               <  1:5745919/93‑1 (MQ=255)

                                                            ccGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAg                             <  2:457837/93‑1 (MQ=255)

                                                             cGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAgg                            >  1:6339948/1‑93 (MQ=255)

                                                             cGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAgg                            <  2:2231594/93‑1 (MQ=255)

                                                              ggAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGgt                           <  2:3485364/93‑1 (MQ=255)

                                                               gAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGgtg                          <  1:6372358/93‑1 (MQ=255)

                                                               gAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGgtg                          >  2:403786/1‑93 (MQ=255)

                                                               gAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGgtg                          >  1:2032436/1‑93 (MQ=255)

                                                                 gCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGtgtg                        >  1:4511594/1‑93 (MQ=255)

                                                                   gATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGcc                      >  1:2824081/1‑93 (MQ=255)

                                                                   gATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGcc                      <  1:3346571/93‑1 (MQ=255)

                                                                   gATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGcc                      >  2:586912/1‑93 (MQ=255)

                                                                   gATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGcc                      <  1:2164424/93‑1 (MQ=255)

                                                                    aTTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCg                     >  1:5296022/1‑93 (MQ=255)

                                                                    aTTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCg                     <  2:2859015/93‑1 (MQ=255)

                                                                        aaGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGagc                 >  1:5009637/1‑93 (MQ=255)

                                                                        aaGATCAGATCTCAGGTGGCGAAGGCGGTGCCAGGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGagc                 <  1:5791685/93‑1 (MQ=255)

                                                                          gatcagatcTCAGGTTGCGAAGGCGGTGCCAAGAGCGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGagcag               >  1:4595837/1‑93 (MQ=255)

                                                                           atcagatcTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGagcagc              <  1:2949671/93‑1 (MQ=255)

                                                                           atcagatcTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGagcagc              <  2:3626528/93‑1 (MQ=255)

                                                                            tcagatcTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGcc             <  1:6188522/93‑1 (MQ=255)

                                                                            tcagatcTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGcc             >  1:3609101/1‑93 (MQ=255)

                                                                            tcagatcTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTCATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGcc             >  1:5383418/1‑93 (MQ=255)

                                                                             cagatcTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCg            >  1:2313668/1‑93 (MQ=255)

                                                                              agatcTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGc           >  1:1857843/1‑93 (MQ=255)

                                                                              agatcTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGc           >  2:5632983/1‑93 (MQ=255)

                                                                               gatcTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCt          >  1:3945991/1‑93 (MQ=255)

                                                                               gatcTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCt          <  1:5066380/93‑1 (MQ=255)

                                                                               gatcTCAGGTTGCGAACGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCt          >  1:3010193/1‑93 (MQ=255)

                                                                                 tctcAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGa        <  1:1137723/93‑1 (MQ=255)

                                                                                 tctcAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGa        >  1:5079949/1‑93 (MQ=255)

                                                                                 tctcAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGa        <  2:3533089/93‑1 (MQ=255)

                                                                                  ctcAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGAc       <  2:5605695/93‑1 (MQ=255)

                                                                                  ctcAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGAc       >  1:3104940/1‑93 (MQ=255)

                                                                                  ctcAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGAc       >  1:1439687/1‑93 (MQ=255)

                                                                                   tcAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGAcg      >  2:4771180/1‑93 (MQ=255)

                                                                                    cAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGAcgc     >  1:4814953/1‑93 (MQ=255)

                                                                                    cAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGAcgc     <  2:1288846/93‑1 (MQ=255)

                                                                                     aGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGAcgcc    >  1:5715404/1‑93 (MQ=255)

                                                                                     aGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGAcgcc    <  2:1786722/93‑1 (MQ=255)

                                                                                      ggTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGAcgccg   >  1:265177/1‑93 (MQ=255)

                                                                                      ggTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGAcgccg   >  2:3242837/1‑93 (MQ=255)

                                                                                       gTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGAcgccgc  <  2:5363470/93‑1 (MQ=255)

TGACCTCGGTCTGGATTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTACGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGACGCCGC  >  NC_000913/3522715‑3522894

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTGTGACCTCGGTCTGGATTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTACGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGACGCCGCCACC  >  NC_000913/3522712‑3522898

TTGTGACCTCGGTCTGGATTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTG                                                                                               <  SRR4302534.6520088/94‑1 (MQ=60)

GTGTGACCTCGGTCTGGATTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTG                                                                                               <  SRR4302534.3442086/94‑1 (MQ=60)

 TGTGACCTCGGTCTGGATTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGC                                                                                              >  SRR4302534.2273859/1‑94 (MQ=60)

 TGTGACCTCGGTCTGGATTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGC                                                                                              <  SRR4302534.3904710/94‑1 (MQ=60)

 TGTGACCTCGGTCTGGATTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGC                                                                                              <  SRR4302534.4065391/94‑1 (MQ=60)

 TGTGACCTCGGTCTGGATTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGC                                                                                              >  SRR4302534.5984170/1‑94 (MQ=60)

   TGACCTCGGTCTGGATTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGA                                                                                            >  SRR4302534.5271821/1‑94 (MQ=60)

     ACCTCGGTCTGGATTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAG                                                                                          <  SRR4302534.4394641/94‑1 (MQ=60)

     ACCTCGGTCTGGATTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAG                                                                                          <  SRR4302534.4007825/94‑1 (MQ=60)

      CCTCGGTCTGGATTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGG                                                                                         <  SRR4302534.3664756/94‑1 (MQ=60)

       CTCGGTCTGGATTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGG                                                                                        >  SRR4302534.4473772/1‑94 (MQ=60)

       CTCGGTCTGGATTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGC                                                                                        >  SRR4302534.2477509/1‑94 (MQ=60)

        TCGGTCTGGATTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCG                                                                                       <  SRR4302534.4367020/94‑1 (MQ=60)

         CGGTCTGGATTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGG                                                                                      <  SRR4302534.1305310/94‑1 (MQ=60)

         CGGTCTGGATTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGG                                                                                      >  SRR4302534.6103403/1‑94 (MQ=60)

          GGTCTGGATTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGT                                                                                     <  SRR4302534.3919577/94‑1 (MQ=60)

            TCTGGATTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGATGC                                                                                   <  SRR4302534.1553926/94‑1 (MQ=60)

              TGGATTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCA                                                                                 <  SRR4302534.6528590/94‑1 (MQ=60)

               GGATTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATATCAGGTTGCGAAGGGTGTGCCAA                                                                                >  SRR4302534.637380/1‑94 (MQ=60)

                 ATTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGA                                                                              <  SRR4302534.3579321/94‑1 (MQ=60)

                  TTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAG                                                                             <  SRR4302534.1188480/94‑1 (MQ=60)

                   TGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGT                                                                            <  SRR4302534.4874263/94‑1 (MQ=60)

                   TGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGT                                                                            <  SRR4302534.2630335/94‑1 (MQ=60)

                   TGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGT                                                                            <  SRR4302534.674424/94‑1 (MQ=60)

                     GCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGC                                                                          <  SRR4302534.882847/94‑1 (MQ=60)

                     GCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGC                                                                          <  SRR4302534.1682699/94‑1 (MQ=60)

                      CTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCC                                                                         <  SRR4302534.3397320/94‑1 (MQ=60)

                        TTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCA                                                                       <  SRR4302534.6047677/94‑1 (MQ=60)

                         TGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAG                                                                      <  SRR4302534.2634051/94‑1 (MQ=60)

                            TGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCT                                                                   <  SRR4302534.6200246/94‑1 (MQ=60)

                            TGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCT                                                                   >  SRR4302534.1713593/1‑94 (MQ=60)

                             GATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTG                                                                  <  SRR4302534.525919/94‑1 (MQ=60)

                             GATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTG                                                                  >  SRR4302534.4235308/1‑94 (MQ=60)

                               TCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCA                                                                >  SRR4302534.1136886/1‑94 (MQ=60)

                               TCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCA                                                                >  SRR4302534.446905/1‑94 (MQ=60)

                               TCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCA                                                                >  SRR4302534.3260196/1‑94 (MQ=60)

                                CACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCAT                                                               <  SRR4302534.3628686/94‑1 (MQ=60)

                                CACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCAT                                                               >  SRR4302534.3421831/1‑94 (MQ=60)

                                 ACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATG                                                              >  SRR4302534.5650473/1‑94 (MQ=60)

                                  CCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGG                                                             <  SRR4302534.2609553/94‑1 (MQ=60)

                                  CCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGG                                                             <  SRR4302534.2559607/94‑1 (MQ=60)

                                   CGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGG                                                            >  SRR4302534.2349379/1‑94 (MQ=60)

                                    GTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGA                                                           <  SRR4302534.4875509/94‑1 (MQ=60)

                                    GTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGGTGCGAAGGCGGTGCCAAGAGTGCCCCGCCTGCATGGGA                                                           >  SRR4302534.2780880/1‑94 (MQ=60)

                                      CGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATTAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACG                                                         >  SRR4302534.3814375/1‑94 (MQ=60)

                                      CGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACG                                                         >  SRR4302534.5494846/1‑94 (MQ=60)

                                      CGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACG                                                         <  SRR4302534.5517367/94‑1 (MQ=60)

                                       GTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGC                                                        >  SRR4302534.4925671/1‑94 (MQ=60)

                                        TAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGgccaaaaagggccaagccgcaatgggagctt                                                       >  SRR4302534.5926046/1‑63 (MQ=60)

                                          ATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTA                                                     <  SRR4302534.5302072/94‑1 (MQ=60)

                                             TCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATAT                                                  >  SRR4302534.4168416/1‑94 (MQ=60)

                                             TCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATAT                                                  <  SRR4302534.258711/94‑1 (MQ=60)

                                              CGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATG                                                 >  SRR4302534.2533326/1‑94 (MQ=60)

                                              CGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATG                                                 >  SRR4302534.568074/1‑94 (MQ=60)

                                               GGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGA                                                >  SRR4302534.5450488/1‑94 (MQ=60)

                                                GTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAA                                               >  SRR4302534.5537579/1‑94 (MQ=60)

                                                  CATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAG                                             <  SRR4302534.6526327/94‑1 (MQ=60)

                                                  CATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAG                                             >  SRR4302534.5215100/1‑94 (MQ=60)

                                                    TACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGCTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCC                                           >  SRR4302534.5885655/1‑94 (MQ=60)

                                                      CAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGCCGCTTATATGAAAGCCGT                                         >  SRR4302534.6561949/1‑94 (MQ=60)

                                                       AACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTT                                        <  SRR4302534.6224497/94‑1 (MQ=60)

                                                       AACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTT                                        <  SRR4302534.2403967/94‑1 (MQ=60)

                                                         CGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCT                                      <  SRR4302534.3244592/94‑1 (MQ=60)

                                                         CGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCT                                      <  SRR4302534.5525977/94‑1 (MQ=60)

                                                          GGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTGTATGAAAGCCGTTCTT                                     <  SRR4302534.5330081/94‑1 (MQ=60)

                                                          GGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTT                                     >  SRR4302534.3126352/1‑94 (MQ=60)

                                                          GGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTT                                     <  SRR4302534.2418177/94‑1 (MQ=60)

                                                          GGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTT                                     <  SRR4302534.1438088/94‑1 (MQ=60)

                                                           GCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTG                                    <  SRR4302534.6550339/94‑1 (MQ=60)

                                                           GCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTG                                    >  SRR4302534.5702284/1‑94 (MQ=60)

                                                           GCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTG                                    <  SRR4302534.6066074/94‑1 (MQ=60)

                                                            CTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGA                                   >  SRR4302534.4489639/1‑94 (MQ=60)

                                                            CTTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGA                                   >  SRR4302534.1165121/1‑94 (MQ=60)

                                                             TTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAA                                  <  SRR4302534.5901714/94‑1 (MQ=60)

                                                             TTCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAA                                  <  SRR4302534.4381655/94‑1 (MQ=60)

                                                              TCCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAG                                 <  SRR4302534.4848470/94‑1 (MQ=60)

                                                              TCAGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAG                                 <  SRR4302534.3681895/94‑1 (MQ=60)

                                                               CCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGG                                >  SRR4302534.6511188/1‑94 (MQ=60)

                                                               CCGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGG                                <  SRR4302534.3688176/94‑1 (MQ=60)

                                                                CGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGT                               <  SRR4302534.1894147/94‑1 (MQ=60)

                                                                CGGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGT                               >  SRR4302534.1998190/1‑94 (MQ=60)

                                                                 GGAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTG                              >  SRR4302534.2085579/1‑94 (MQ=60)

                                                                  GAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGT                             <  SRR4302534.4094122/94‑1 (MQ=60)

                                                                  GAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGT                             >  SRR4302534.117830/1‑94 (MQ=60)

                                                                  GAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGT                             <  SRR4302534.6544412/94‑1 (MQ=60)

                                                                  GAGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGT                             <  SRR4302534.3117393/94‑1 (MQ=60)

                                                                   AGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTG                            <  SRR4302534.285337/94‑1 (MQ=60)

                                                                   AGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTG                            >  SRR4302534.4633783/1‑94 (MQ=60)

                                                                   AGCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTG                            >  SRR4302534.2992293/1‑94 (MQ=60)

                                                                    GCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGC                           <  SRR4302534.5096572/94‑1 (MQ=60)

                                                                    GCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGC                           <  SRR4302534.5158819/94‑1 (MQ=60)

                                                                    GCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGC                           <  SRR4302534.5893808/94‑1 (MQ=60)

                                                                    GCGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGC                           <  SRR4302534.643580/94‑1 (MQ=60)

                                                                     CGATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCC                          >  SRR4302534.2898323/1‑94 (MQ=60)

                                                                      GATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCG                         <  SRR4302534.1309142/94‑1 (MQ=60)

                                                                      GATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCG                         >  SRR4302534.5438954/1‑94 (MQ=60)

                                                                      GATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCG                         <  SRR4302534.1213336/94‑1 (MQ=60)

                                                                      GATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCG                         <  SRR4302534.3436155/94‑1 (MQ=60)

                                                                      GATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCG                         <  SRR4302534.2221585/94‑1 (MQ=60)

                                                                       ATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGG                        >  SRR4302534.2219681/1‑94 (MQ=60)

                                                                       ATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGG                        >  SRR4302534.2502179/1‑94 (MQ=60)

                                                                       ATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGG                        >  SRR4302534.2172588/1‑94 (MQ=60)

                                                                       ATTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGG                        >  SRR4302534.538851/1‑94 (MQ=60)

                                                                        TTAAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGA                       >  SRR4302534.517274/1‑94 (MQ=60)

                                                                          AAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGC                     >  SRR4302534.5145041/1‑94 (MQ=60)

                                                                          AAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGC                     >  SRR4302534.4909584/1‑94 (MQ=60)

                                                                          AAAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGC                     >  SRR4302534.150898/1‑94 (MQ=60)

                                                                           AAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCA                    <  SRR4302534.3039425/94‑1 (MQ=60)

                                                                           AAGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCA                    <  SRR4302534.6045896/94‑1 (MQ=60)

                                                                           AAGATCAGATCTCAGGTGGCGAAGGCGGTGCCAGGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCA                    <  SRR4302534.5948816/94‑1 (MQ=60)

                                                                            AGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTGCTTGATGGTGTGgaggagcga                   <  SRR4302534.266134/94‑10 (MQ=60)

                                                                            AGATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGCGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAG                   >  SRR4302534.4720569/1‑94 (MQ=60)

                                                                              ATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCC                 <  SRR4302534.3027039/94‑1 (MQ=60)

                                                                              ATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCC                 >  SRR4302534.3706151/1‑94 (MQ=60)

                                                                              ATCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTCATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCC                 >  SRR4302534.5528430/1‑94 (MQ=60)

                                                                               TCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCG                >  SRR4302534.3517673/1‑94 (MQ=60)

                                                                               TCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCG                >  SRR4302534.2375063/1‑94 (MQ=60)

                                                                               TCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCG                >  SRR4302534.2468698/1‑94 (MQ=60)

                                                                               TCAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCG                <  SRR4302534.6356941/94‑1 (MQ=60)

                                                                                CAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGC               >  SRR4302534.1906204/1‑94 (MQ=60)

                                                                                CAGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGC               >  SRR4302534.1181400/1‑94 (MQ=60)

                                                                                 AGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCT              >  SRR4302534.2386292/1‑94 (MQ=60)

                                                                                 AGATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCT              >  SRR4302534.4051644/1‑94 (MQ=60)

                                                                                 AGATCTCAGGTTGCGAACGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCT              >  SRR4302534.3088961/1‑94 (MQ=60)

                                                                                  GATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTG             <  SRR4302534.5203166/94‑1 (MQ=60)

                                                                                   ATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGA            >  SRR4302534.4585585/1‑94 (MQ=60)

                                                                                   ATCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGA            >  SRR4302534.5217070/1‑94 (MQ=60)

                                                                                    TCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGAC           >  SRR4302534.1477583/1‑94 (MQ=60)

                                                                                    TCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGAC           <  SRR4302534.2620861/94‑1 (MQ=60)

                                                                                    TCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGAC           >  SRR4302534.3793929/1‑94 (MQ=60)

                                                                                    TCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGAC           <  SRR4302534.1167477/94‑1 (MQ=60)

                                                                                    TCTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGAC           >  SRR4302534.3186599/1‑94 (MQ=60)

                                                                                     CTCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGACG          <  SRR4302534.1514317/94‑1 (MQ=60)

                                                                                      TCAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGACGC         >  SRR4302534.4945656/1‑94 (MQ=60)

                                                                                       CAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGACGCC        >  SRR4302534.5870252/1‑94 (MQ=60)

                                                                                       CAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGACGCC        <  SRR4302534.4707027/94‑1 (MQ=60)

                                                                                       CAGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGACGCC        >  SRR4302534.1752227/1‑94 (MQ=60)

                                                                                        AGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGACGCCG       >  SRR4302534.272058/1‑94 (MQ=60)

                                                                                        AGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGACGCCG       <  SRR4302534.3552524/94‑1 (MQ=60)

                                                                                        AGGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGACGCCG       >  SRR4302534.2915477/1‑94 (MQ=60)

                                                                                         GGTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGACGCCGC      >  SRR4302534.6291414/1‑94 (MQ=60)

                                                                                          GTTGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGACGCCGCC     <  SRR4302534.2358387/94‑1 (MQ=60)

                                                                                            TGCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGACGCCGCCAC   <  SRR4302534.5524007/94‑1 (MQ=60)

                                                                                             GCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGACGCCGCCACC  <  SRR4302534.3638442/94‑1 (MQ=60)

                                                                                             GCGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGACGCCGCCACC  <  SRR4302534.6623073/94‑1 (MQ=60)

                                                                                             GCGAAGGCGGTGCAAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGACGCCGCCACC  <  SRR4302534.4811382/94‑1 (MQ=60)

TTGTGACCTCGGTCTGGATTGGCTTTGATGATCACCGTCGTAATCTCGGTCATACAACGGCTTCCGGAGCGATTAAAGATCAGATCTCAGGTTACGAAGGCGGTGCCAAGAGTGCCCAGCCTGCATGGGACGCTTATATGAAAGCCGTTCTTGAAGGTGTGCCGGAGCAGCCGCTGACGCCGCCACC  >  NC_000913/3522712‑3522898

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 8 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`