Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 884 257.2 12958910 96.9% 12557183 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,558,932 2 bp→GC coding (153‑154/831 nt) glpG ← GlpG

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,558,9320CG100.0% 825.5 / NA 242V52L (GTG→CTG) glpGGlpG
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (109/133);  total (109/133)
*NC_0009133,558,9330GC100.0% 821.6 / NA 242D51E (GAC→GAG) glpGGlpG
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base C (109/133);  total (109/133)

Only 100 of 255 total aligned reads displayed.

GATAATGCAGGCCACTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCACGTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAGGATAACACCCTG  >  NC_000913/3558845‑3559019
                                                                                       ||                                                                                      
gATAATGCAGGCCACTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCg                                                                                    >  2:1199223/1‑93 (MQ=255)
gATAATGCAGGCCACTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCg                                                                                    >  2:3199539/1‑93 (MQ=255)
  tAATGCAGGCCACTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGcc                                                                                  >  2:4575310/1‑93 (MQ=255)
     tGCAGGCCACTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGt                                                                               <  1:4567476/93‑1 (MQ=255)
     tGCAGGCCACTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGt                                                                               <  2:2487273/93‑1 (MQ=255)
      gCAGGCCACTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTa                                                                              <  1:4689427/93‑1 (MQ=255)
      gCAGGCCACTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCCAGAAAACGCGCCAGCTCCGCCCgga                                                                              >  2:2241861/1‑91 (MQ=255)
       cAGGCCACTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGGTTTCGAGAAAACGCGCCAGCTCCGCCCGTAc                                                                             >  2:145409/1‑93 (MQ=255)
       cAGCCCACTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTAc                                                                             <  2:664141/93‑1 (MQ=255)
        aGGCCACTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTAcg                                                                            >  1:2850383/1‑93 (MQ=255)
         ggCCACTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGGTTTCGAGAAAACGCGCCAGCTCCGCCCGTAcgc                                                                           >  1:2175255/1‑93 (MQ=255)
            cACTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCt                                                                        >  2:5552715/1‑93 (MQ=255)
            cACTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCt                                                                        >  2:2932076/1‑93 (MQ=255)
             aCTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTc                                                                       <  1:3611087/93‑1 (MQ=255)
             aCTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTc                                                                       >  2:6448555/1‑93 (MQ=255)
              cTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCg                                                                      >  1:4953176/1‑93 (MQ=255)
               tGCCGGTATGGCTTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCgg                                                                     <  2:2095680/93‑1 (MQ=255)
                gCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGc                                                                    <  1:3210065/93‑1 (MQ=255)
                 ccGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGcc                                                                   >  2:1956678/1‑93 (MQ=255)
                 ccGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGcc                                                                   <  1:3999272/93‑1 (MQ=255)
                  cGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCt                                                                  <  1:5734606/93‑1 (MQ=255)
                  cGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCt                                                                  <  1:3393155/93‑1 (MQ=255)
                   ggTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTg                                                                 <  2:2329004/93‑1 (MQ=255)
                    gTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTgg                                                                >  2:1872310/1‑93 (MQ=255)
                       tgccctgcctgCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGAc                                                             <  1:4582762/90‑1 (MQ=255)
                       tGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGAc                                                             <  1:75169/93‑1 (MQ=255)
                        ggCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACt                                                            <  2:5620109/93‑1 (MQ=255)
                        ggCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACt                                                            >  1:1430100/1‑93 (MQ=255)
                        ggCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAAAGCGCCAGCTCCGCCCGTACGCGCTCGGCCTTGGACt                                                            >  1:1774003/1‑93 (MQ=255)
                         gcctgcctGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTc                                                           >  1:1981887/1‑93 (MQ=255)
                         gcctgcctGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTc                                                           <  1:151384/93‑1 (MQ=255)
                         gccggcctGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTc                                                           <  2:6122946/93‑1 (MQ=255)
                           ctgcctgcCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCAt                                                         >  2:5760062/1‑93 (MQ=255)
                            tgcctgccAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATc                                                        <  2:2700966/93‑1 (MQ=255)
                            tgcctgccAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATc                                                        <  2:5338879/93‑1 (MQ=255)
                            tgcctgccAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATc                                                        >  1:6081937/1‑93 (MQ=255)
                            tgcctgccAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATc                                                        <  2:871654/93‑1 (MQ=255)
                             gcctgccAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATcc                                                       <  1:1033432/93‑1 (MQ=255)
                             gcctgccAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATcc                                                       >  1:5406297/1‑93 (MQ=255)
                             gcctgccAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATcc                                                       <  1:762180/93‑1 (MQ=255)
                             gcctgcaAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATcc                                                       <  2:3333284/93‑1 (MQ=255)
                                tgccAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCgcc                                                    <  2:5238751/93‑1 (MQ=255)
                                tgccAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCgcc                                                    >  1:654029/1‑93 (MQ=255)
                                 gccAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCgcca                                                   >  1:2253456/1‑93 (MQ=255)
                                 gccAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCgcca                                                   >  2:3139584/1‑93 (MQ=255)
                                  ccAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCgccac                                                  >  1:3941698/1‑92 (MQ=255)
                                   cAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCgccagc                                                 <  2:4003772/93‑1 (MQ=255)
                                    aGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCgccagcc                                                >  1:4400906/1‑93 (MQ=255)
                                    aGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCgccagcc                                                <  1:4531296/93‑1 (MQ=255)
                                      cTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGccagccag                                              <  1:2787572/93‑1 (MQ=255)
                                       tCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGa                                             >  1:3115853/1‑93 (MQ=255)
                                       tCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGa                                             >  2:490495/1‑93 (MQ=255)
                                        cgccgcCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGccagccagcc                                            >  1:2747247/1‑91 (MQ=255)
                                        cgccgcCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGAc                                            >  2:4330695/1‑93 (MQ=255)
                                         gccgccAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACa                                           >  2:6217067/1‑93 (MQ=255)
                                         gccgccAGATAACGCGGATCTGCAGGGTTTTCGAGAAAACGCGCCAGCTCCGCACGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACa                                           >  2:2729049/1‑93 (MQ=255)
                                          ccgccAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACAt                                          <  2:3898861/93‑1 (MQ=255)
                                          ccgccAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACAt                                          <  2:3617860/93‑1 (MQ=255)
                                           cgccAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATc                                         >  2:4137523/1‑93 (MQ=255)
                                           cgccAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATc                                         >  1:1727239/1‑93 (MQ=255)
                                            gccAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCg                                        <  2:1422809/93‑1 (MQ=255)
                                              cAGATAACGCGGATCTGCCGGGTTTTAGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCt                                      >  1:2178432/1‑93 (MQ=255)
                                                gATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCttt                                    <  2:2601760/93‑1 (MQ=255)
                                                gATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCttt                                    >  1:865429/1‑93 (MQ=255)
                                                   aaCGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGt                                 <  1:5115281/93‑1 (MQ=255)
                                                   aaCGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGt                                 <  1:5372057/93‑1 (MQ=255)
                                                   aaCGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGt                                 >  1:4302910/1‑93 (MQ=255)
                                                    aCGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGtt                                >  2:6064831/1‑93 (MQ=255)
                                                     cgcgGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTa                               <  1:6034691/93‑1 (MQ=255)
                                                     cgcgGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTa                               <  2:379184/93‑1 (MQ=255)
                                                        ggATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTAtgt                            >  1:3346584/1‑93 (MQ=255)
                                                         gATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTAtgtt                           >  2:5195644/1‑93 (MQ=255)
                                                          aTCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTAtgttg                          <  2:4676415/93‑1 (MQ=255)
                                                            cTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATgttgtt                        <  2:2301599/93‑1 (MQ=255)
                                                              gCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGa                      >  2:3413198/1‑93 (MQ=255)
                                                              cccGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGa                      <  1:6189067/92‑1 (MQ=255)
                                                               ccGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGaa                     >  1:4779149/1‑93 (MQ=255)
                                                               ccGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGaa                     >  1:5647104/1‑93 (MQ=255)
                                                                cGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAAt                    >  2:5454886/1‑93 (MQ=255)
                                                                cGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAAt                    >  1:1900990/1‑93 (MQ=255)
                                                                cGGGTTTTCGAGAAAACGCCCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAAt                    <  2:1730890/93‑1 (MQ=255)
                                                                 gggTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATc                   >  1:4224806/1‑93 (MQ=255)
                                                                 gggTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATc                   >  2:2819373/1‑93 (MQ=255)
                                                                   gTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGt                 <  2:4432836/93‑1 (MQ=255)
                                                                   gTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGt                 >  2:5096057/1‑93 (MQ=255)
                                                                   gTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGt                 <  2:687885/93‑1 (MQ=255)
                                                                    ttttCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTg                <  2:6409478/93‑1 (MQ=255)
                                                                    ttttCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTg                <  2:1010472/93‑1 (MQ=255)
                                                                    ttttCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTg                >  1:5887466/1‑93 (MQ=255)
                                                                        cGAGAAACCGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAGGa            <  1:1149480/93‑1 (MQ=255)
                                                                         gagaAACCGCGCCAGCTCCCCCCGTACGCGCTCGGCCTGGCACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAGGAt           <  1:5093117/93‑1 (MQ=255)
                                                                         gagaAAATGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAGGAt           <  2:3028955/93‑1 (MQ=255)
                                                                         gagaAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAGGAt           >  2:5300693/1‑93 (MQ=255)
                                                                             aaaCGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAGGATAaca       >  1:6410924/1‑93 (MQ=255)
                                                                              aaCGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAGGATAacac      >  1:5207327/1‑93 (MQ=255)
                                                                              aaCGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAGGATAacac      >  2:3450956/1‑93 (MQ=255)
                                                                               aCGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAGGATAACAcc     >  2:3684347/1‑93 (MQ=255)
                                                                                cgcgCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAGGATAACAccc    <  1:2526109/93‑1 (MQ=255)
                                                                                cgcgCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAGGATAACAccc    <  1:5233291/93‑1 (MQ=255)
                                                                                 gcgcCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAGGATAACACCCt   <  1:5556848/93‑1 (MQ=255)
                                                                                       ||                                                                                      
GATAATGCAGGCCACTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCACGTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAGGATAACACCCTG  >  NC_000913/3558845‑3559019

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AACGGCGATAATGCAGGCCACTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCACGTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAGGATAACACCCTGCG  >  NC_000913/3558839‑3559021
                                                                                             |                                                                                         
AACGGCGATAATGCAGGCCACTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAG                                                                                           >  SRR4302534.5728274/1‑94 (MQ=60)
AACGGCGATAATGCAGGCCACTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAG                                                                                           >  SRR4302534.1164922/1‑94 (MQ=60)
AACGGCGATAATGCAGGCCACTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAG                                                                                           >  SRR4302534.2096253/1‑94 (MQ=60)
     CGATAATGCAGGCCACTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCG                                                                                      <  SRR4302534.3768167/94‑1 (MQ=60)
     CGATAATGCAGGCCACTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCG                                                                                      <  SRR4302534.5398282/94‑1 (MQ=60)
      GATAATGCAGGCCACTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGC                                                                                     <  SRR4302534.4413239/94‑1 (MQ=60)
      GATAATGCAGGCCACTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGC                                                                                     <  SRR4302534.2533982/94‑1 (MQ=60)
         AATGCAGGCCACTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCG                                                                                  >  SRR4302534.2857327/1‑94 (MQ=60)
           TGCAGGCCACTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTA                                                                                <  SRR4302534.4691303/94‑1 (MQ=60)
            GCAGGCCACTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTAC                                                                               <  SRR4302534.4816709/94‑1 (MQ=60)
            GCAGCCCACTGCCGGTATGCCCTCCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTAC                                                                               <  SRR4302534.2093398/94‑1 (MQ=60)
             CAGGCCACTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACG                                                                              >  SRR4302534.2925251/1‑94 (MQ=60)
              ggacaacggcgggaATGGCATGCCTGCAAGCTCGCCGCCAGATAACGCGCATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGC                                                                             <  SRR4302534.4611978/80‑1 (MQ=60)
              AGGCCACTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGC                                                                             >  SRR4302534.4467366/1‑94 (MQ=60)
              AGGCCACTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGC                                                                             >  SRR4302534.3499370/1‑94 (MQ=60)
              AGGCCACTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGGTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGC                                                                             >  SRR4302534.2232725/1‑94 (MQ=60)
               GGCCACTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCG                                                                            >  SRR4302534.397008/1‑94 (MQ=60)
                 CCCCTGCCGGTAGGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCT                                                                          <  SRR4302534.4800754/94‑1 (MQ=60)
                  CACTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTC                                                                         >  SRR4302534.1261670/1‑94 (MQ=60)
                   CCTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCG                                                                        <  SRR4302534.1077677/94‑1 (MQ=60)
                   ACTGCCGGTATGGCCTGCCTGGCAGCTCGCCGCCAGATAACGCGGATCTGACGGGTTTTCGAGAAAACGCGCCAGCTCCGCGCGTACGCGCTCG                                                                        >  SRR4302534.6142122/1‑94 (MQ=60)
                   ACTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCG                                                                        <  SRR4302534.563707/94‑1 (MQ=60)
                   ACTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCG                                                                        <  SRR4302534.3708196/94‑1 (MQ=60)
                   ACTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCG                                                                        >  SRR4302534.5087330/1‑94 (MQ=60)
                    CTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGG                                                                       <  SRR4302534.3998796/94‑1 (MQ=60)
                     TGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGC                                                                      >  SRR4302534.5374781/1‑94 (MQ=60)
                      GCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCC                                                                     <  SRR4302534.3295244/94‑1 (MQ=60)
                       CCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCT                                                                    <  SRR4302534.1472787/94‑1 (MQ=60)
                       CCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCT                                                                    <  SRR4302534.4106322/94‑1 (MQ=60)
                        CGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTG                                                                   <  SRR4302534.3484179/94‑1 (MQ=60)
                        CGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTG                                                                   <  SRR4302534.5890004/94‑1 (MQ=60)
                          GTATGCCCTGCGTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGG                                                                 <  SRR4302534.3363307/94‑1 (MQ=60)
                           TATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGA                                                                >  SRR4302534.5466527/1‑94 (MQ=60)
                           TATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGA                                                                >  SRR4302534.678581/1‑94 (MQ=60)
                            agggccgcCCTGCCAGCTCGCCGCCAGAAAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGAC                                                               <  SRR4302534.3387515/86‑1 (MQ=60)
                             TGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACT                                                              >  SRR4302534.1467738/1‑94 (MQ=60)
                             TGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACT                                                              >  SRR4302534.4336817/1‑94 (MQ=60)
                             TGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACT                                                              <  SRR4302534.77202/94‑1 (MQ=60)
                             TGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAAAGCGCCAGCTCCGCCCGTACGCGCTCGGCCTTGGACT                                                              >  SRR4302534.1820045/1‑94 (MQ=60)
                             TGCCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACT                                                              <  SRR4302534.4707093/94‑1 (MQ=60)
                              GGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTC                                                             >  SRR4302534.5818227/1‑94 (MQ=60)
                              GGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTC                                                             >  SRR4302534.2033784/1‑94 (MQ=60)
                              GGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTC                                                             <  SRR4302534.3522083/94‑1 (MQ=60)
                               GCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCA                                                            <  SRR4302534.155331/94‑1 (MQ=60)
                                 CTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATC                                                          >  SRR4302534.6247340/1‑94 (MQ=60)
                                  TGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCC                                                         <  SRR4302534.1189643/94‑1 (MQ=60)
                                  TGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCC                                                         >  SRR4302534.2236707/1‑94 (MQ=60)
                                  TGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCC                                                         <  SRR4302534.1784660/94‑1 (MQ=60)
                                  TGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCC                                                         >  SRR4302534.5551770/1‑94 (MQ=60)
                                   GCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCG                                                        <  SRR4302534.1060097/94‑1 (MQ=60)
                                   GCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCG                                                        >  SRR4302534.5626244/1‑94 (MQ=60)
                                   GCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCG                                                        <  SRR4302534.781101/94‑1 (MQ=60)
                                    CCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGC                                                       <  SRR4302534.1718348/94‑1 (MQ=60)
                                    CCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGC                                                       >  SRR4302534.5321386/1‑94 (MQ=60)
                                     CTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCC                                                      >  SRR4302534.669951/1‑94 (MQ=60)
                                     CTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCC                                                      >  SRR4302534.4367967/1‑94 (MQ=60)
                                      TGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCC                                                     >  SRR4302534.2547814/1‑94 (MQ=60)
                                      TGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCA                                                     >  SRR4302534.2793348/1‑94 (MQ=60)
                                      TGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCA                                                     >  SRR4302534.2313189/1‑94 (MQ=60)
                                      TGCCAGCTCGCCGCCACATAACGCGGATCTGCCGGCTTTTAGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCA                                                     <  SRR4302534.3105804/94‑1 (MQ=60)
                                       GCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAG                                                    <  SRR4302534.1872179/94‑1 (MQ=60)
                                       GCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAC                                                    >  SRR4302534.4047260/1‑94 (MQ=60)
                                         CAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCC                                                  >  SRR4302534.5171429/1‑94 (MQ=60)
                                         CAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCC                                                  >  SRR4302534.4519648/1‑94 (MQ=60)
                                          AGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCA                                                 <  SRR4302534.4654077/94‑1 (MQ=60)
                                          AGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCA                                                 <  SRR4302534.791004/94‑1 (MQ=60)
                                            CTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGA                                               >  SRR4302534.6202745/1‑94 (MQ=60)
                                            CTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGA                                               <  SRR4302534.2860888/94‑1 (MQ=60)
                                            CTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGA                                               >  SRR4302534.3197783/1‑94 (MQ=60)
                                             TCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGCC                                              >  SRR4302534.2819627/1‑94 (MQ=60)
                                             TCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGAC                                              <  SRR4302534.531781/94‑1 (MQ=60)
                                             TCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGAC                                              <  SRR4302534.6534219/94‑1 (MQ=60)
                                             TCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGAC                                              <  SRR4302534.3321362/94‑1 (MQ=60)
                                              CGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACA                                             >  SRR4302534.6584680/1‑94 (MQ=60)
                                                CCGCCAGATAACGCGTATCTGCCGGGTTTTCGAGAAATCGCGCCAGCTCCGCCCGTCCGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATC                                           <  SRR4302534.5263542/94‑1 (MQ=60)
                                                CCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATC                                           >  SRR4302534.1772089/1‑94 (MQ=60)
                                                  GCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGC                                         >  SRR4302534.51758/1‑94 (MQ=60)
                                                   CCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCT                                        >  SRR4302534.4686577/1‑94 (MQ=60)
                                                   CCAGATAACGCGGATCTGCCGGGTTTTAGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCT                                        >  SRR4302534.2235992/1‑94 (MQ=60)
                                                     AGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTT                                      >  SRR4302534.887287/1‑94 (MQ=60)
                                                      GATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTG                                     <  SRR4302534.776396/94‑1 (MQ=60)
                                                       ATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGG                                    <  SRR4302534.4077490/94‑1 (MQ=60)
                                                        TAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGT                                   <  SRR4302534.4691836/94‑1 (MQ=60)
                                                        TAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGT                                   >  SRR4302534.4419563/1‑94 (MQ=60)
                                                        TAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGT                                   <  SRR4302534.2235047/94‑1 (MQ=60)
                                                        TAACGATGATCTGCCGTGTTTTCGAGAAAACGCTCCAGCTCCGCCCGTACGCGCTCGGCCTGTGACCCCTCCGCCAGCAAGACATCGaatcggt                                   >  SRR4302534.4299568/1‑87 (MQ=36)
                                                         AACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTT                                  <  SRR4302534.5253327/94‑1 (MQ=60)
                                                         AACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTT                                  >  SRR4302534.5745442/1‑94 (MQ=60)
                                                         AACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTT                                  <  SRR4302534.5516810/94‑1 (MQ=60)
                                                           CGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTAT                                <  SRR4302534.2229538/94‑1 (MQ=60)
                                                           CGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTAT                                <  SRR4302534.6198703/94‑1 (MQ=60)
                                                             CGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGT                              <  SRR4302534.321884/94‑1 (MQ=60)
                                                             CGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGT                              >  SRR4302534.3436168/1‑94 (MQ=60)
                                                             CGGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGT                              >  SRR4302534.5072368/1‑94 (MQ=60)
                                                              GGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTT                             <  SRR4302534.2990510/94‑1 (MQ=60)
                                                              GGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTT                             >  SRR4302534.1588511/1‑94 (MQ=60)
                                                              GGATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTT                             >  SRR4302534.5526194/1‑94 (MQ=60)
                                                               GATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTG                            <  SRR4302534.3439959/94‑1 (MQ=60)
                                                                ATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGT                           >  SRR4302534.6221221/1‑94 (MQ=60)
                                                                ATCTGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGT                           >  SRR4302534.4884587/1‑94 (MQ=60)
                                                                   TGCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGA                        <  SRR4302534.5245507/94‑1 (MQ=60)
                                                                    GCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAA                       >  SRR4302534.5838375/1‑94 (MQ=60)
                                                                    GCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAA                       >  SRR4302534.4908926/1‑94 (MQ=60)
                                                                    GCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAA                       <  SRR4302534.2897726/94‑1 (MQ=60)
                                                                    GCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAA                       >  SRR4302534.5799970/1‑94 (MQ=60)
                                                                    CCCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAA                       <  SRR4302534.6357496/94‑1 (MQ=60)
                                                                     CCGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAAT                      >  SRR4302534.1950568/1‑94 (MQ=60)
                                                                      CGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATC                     <  SRR4302534.465882/94‑1 (MQ=60)
                                                                      CGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATC                     <  SRR4302534.4586998/94‑1 (MQ=60)
                                                                      CGGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATC                     >  SRR4302534.4338683/1‑94 (MQ=60)
                                                                       GGTTTTTCGAGAAACCGCTCCAGCTCCACCCGTACGTGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCG                    <  SRR4302534.997142/94‑1 (MQ=60)
                                                                       GGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCG                    >  SRR4302534.1942280/1‑94 (MQ=60)
                                                                       GGGTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCG                    <  SRR4302534.4302610/94‑1 (MQ=60)
                                                                         GTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGGCTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTCAATCGTG                  >  SRR4302534.6268370/1‑94 (MQ=60)
                                                                         GTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTG                  <  SRR4302534.3067620/94‑1 (MQ=60)
                                                                         GTTTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTG                  >  SRR4302534.6047319/1‑94 (MQ=60)
                                                                          TTTTGGAGAAACCGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGA                 <  SRR4302534.4506190/94‑1 (MQ=60)
                                                                           TTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAG                >  SRR4302534.2822499/1‑94 (MQ=60)
                                                                           TTTCGAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAG                <  SRR4302534.5996336/94‑1 (MQ=60)
                                                                              CGAGAAACCGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAGGAT             <  SRR4302534.1179612/94‑1 (MQ=60)
                                                                               GAGAAACCGCGCCAGCTCCCCCCGTACGCGCTCGGCCTGGCACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAGGATA            <  SRR4302534.5230602/94‑1 (MQ=60)
                                                                               GAGAAAACGCGCCAGCTCCGGCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAGGATA            >  SRR4302534.6404638/1‑94 (MQ=60)
                                                                               GAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAGGATA            <  SRR4302534.4961002/94‑1 (MQ=60)
                                                                               GAGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAGGATA            <  SRR4302534.6153996/94‑1 (MQ=60)
                                                                                AGAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAGGATAA           >  SRR4302534.6263345/1‑94 (MQ=60)
                                                                                 GAAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAGGATAAC          <  SRR4302534.2496730/94‑1 (MQ=60)
                                                                                  AAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAGGATAACA         <  SRR4302534.2305252/94‑1 (MQ=60)
                                                                                  AAAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAGGATAACA         >  SRR4302534.6583916/1‑94 (MQ=60)
                                                                                   AAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAGGATAACAC        >  SRR4302534.5347843/1‑94 (MQ=60)
                                                                                   AAACGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAGGATAACAC        >  SRR4302534.717070/1‑94 (MQ=60)
                                                                                    ACCGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAGGATAACACA       <  SRR4302534.823160/94‑1 (MQ=60)
                                                                                      CGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAGGATAACACCCT     <  SRR4302534.5374582/94‑1 (MQ=60)
                                                                                      CGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAGGATAACACCCT     <  SRR4302534.2593149/94‑1 (MQ=60)
                                                                                      CGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAGGATAACACCCT     <  SRR4302534.4804850/94‑1 (MQ=60)
                                                                                      CGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAGGATAACACCCT     <  SRR4302534.6012861/94‑1 (MQ=60)
                                                                                      CGCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAGGATAACACCCT     <  SRR4302534.5366049/94‑1 (MQ=60)
                                                                                       GCGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAGGATAACACCCTG    <  SRR4302534.5706872/94‑1 (MQ=60)
                                                                                        CGCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAGGATAACACCCTGC   <  SRR4302534.2030618/94‑1 (MQ=60)
                                                                                         GCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAGGATAACACCCTGCG  >  SRR4302534.3636110/1‑94 (MQ=60)
                                                                                         GCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAGGATAACACCCTGCG  >  SRR4302534.5875669/1‑94 (MQ=60)
                                                                                         GCCAGCTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAGGATAACACCCTGCG  >  SRR4302534.1049950/1‑94 (MQ=60)
                                                                                             |                                                                                         
AACGGCGATAATGCAGGCCACTGCCGGTATGGCCTGCCTGCCAGCTCGCCGCCAGATAACGCGGATCTGCCGGGTTTTCGAGAAAACGCGCCACGTCCGCCCGTACGCGCTCGGCCTGGGACTCATCCGCCAGCCAGACATCGCTTTGGTTATGTTGTTGAATCGTGAGGATAACACCCTGCG  >  NC_000913/3558839‑3559021

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑