Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,579,035	T→C	R89R (CGT→CGC)	yhhY →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,579,035	0	T	C	100.0%	806.1 / NA	228	R89R (CGT→CGC)	yhhY	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (94/134); total (94/134)

Only 100 of 232 total aligned reads displayed.

TGGAGACGTCGTGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGTTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGATCGCATTGAACTAAC  >  NC_000913/3578945‑3579124

tGGAGACGTCGTGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTg                                                                                         <  1:1151848/93‑1 (MQ=255)

  gagaCGTCGTGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGga                                                                                       >  2:2161788/1‑93 (MQ=255)

     aCGTCGTGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGgaaga                                                                                    >  2:3808136/1‑93 (MQ=255)

        tcgtGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAAcc                                                                                 <  1:3074907/93‑1 (MQ=255)

        tcgtGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAAcc                                                                                 <  2:3272058/93‑1 (MQ=255)

        tcgtGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAAcc                                                                                 <  2:1246956/93‑1 (MQ=255)

          gtGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTTATGTTGCCTATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACcgc                                                                               <  1:4024727/93‑1 (MQ=255)

          gtGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACcgc                                                                               <  1:4640717/93‑1 (MQ=255)

          gtGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACcgc                                                                               <  1:2063438/93‑1 (MQ=255)

          gtGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACcgc                                                                               <  2:2721614/93‑1 (MQ=255)

           tGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACcgcg                                                                              <  2:3918405/93‑1 (MQ=255)

             ggCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCgcggc                                                                            >  1:329237/1‑93 (MQ=255)

             ggCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCgcggc                                                                            <  2:1142756/93‑1 (MQ=255)

              gCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTTGTATCTGTGTCGACTCTCGCTGGAAGAACCgcggcg                                                                           >  1:3990241/1‑93 (MQ=255)

              gCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCgcggcg                                                                           >  1:4139571/1‑93 (MQ=255)

               ccATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGt                                                                          <  2:3730672/93‑1 (MQ=255)

                cATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTc                                                                         <  2:3065003/93‑1 (MQ=255)

                 aTCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCg                                                                        >  1:2706395/1‑93 (MQ=255)

                        cATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAgcgc                                                                 >  1:3504494/1‑93 (MQ=255)

                         aTTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGcc                                                                >  2:3716428/1‑93 (MQ=255)

                          ttGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGccc                                                               >  2:1958828/1‑93 (MQ=255)

                          ttGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGccc                                                               <  2:4553563/93‑1 (MQ=255)

                          ttGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGccc                                                               <  2:6389650/93‑1 (MQ=255)

                             aCGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGa                                                            <  2:3926762/93‑1 (MQ=255)

                               gTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGGCTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATg                                                          <  1:134833/93‑1 (MQ=255)

                                tGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGc                                                         <  2:483836/93‑1 (MQ=255)

                                 gCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCg                                                        >  2:343181/1‑93 (MQ=255)

                                  cAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCga                                                       <  2:1680958/93‑1 (MQ=255)

                                  cAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGGATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCga                                                       >  2:4085599/1‑93 (MQ=255)

                                   aaCAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCgag                                                      <  2:3184039/93‑1 (MQ=255)

                                   aaCAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAAACGCGGCGTCGCCAGCGCCCTGATGCgag                                                      >  1:5105678/1‑93 (MQ=255)

                                    aCAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCgaga                                                     >  2:5707343/1‑93 (MQ=255)

                                      aGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCgagaga                                                   >  1:633886/1‑93 (MQ=255)

                                      aGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCgagaga                                                   <  2:2105879/93‑1 (MQ=255)

                                        cgcCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAgatg                                                 >  1:3848206/1‑93 (MQ=255)

                                        cgcCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAgatg                                                 >  1:5132003/1‑93 (MQ=255)

                                        ccgccACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAgatg                                                 <  2:1570146/90‑1 (MQ=255)

                                         gcCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTTGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAgatga                                                <  1:3487298/93‑1 (MQ=255)

                                          cccACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAgatgat                                               <  1:1734979/93‑1 (MQ=255)

                                          cccACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAgatgat                                               <  2:3253482/93‑1 (MQ=255)

                                          cccACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAgatgat                                               >  2:5988282/1‑93 (MQ=255)

                                          cccACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAgatgat                                               >  1:3406130/1‑93 (MQ=255)

                                          cccACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGACAGCGCCCTGATGCGAGAgatgat                                               <  2:4599788/93‑1 (MQ=255)

                                           ccACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGAtt                                              <  1:6394555/93‑1 (MQ=255)

                                           ccACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTCGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGAtt                                              <  2:3245560/93‑1 (MQ=255)

                                            cACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTg                                             >  2:2263408/1‑93 (MQ=255)

                                            cACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTg                                             <  1:5762625/93‑1 (MQ=255)

                                              cgccgcAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGaa                                           >  1:1396501/1‑93 (MQ=255)

                                              cgccgcAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGaa                                           >  2:249851/1‑93 (MQ=255)

                                                ccgcAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAAt                                         >  2:2651862/1‑93 (MQ=255)

                                                ccgcAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAAt                                         >  2:4961918/1‑93 (MQ=255)

                                                ccgcAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAAt                                         <  2:2063655/93‑1 (MQ=255)

                                                ccgcAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAAt                                         <  1:2292017/93‑1 (MQ=255)

                                                 cgcAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAAtg                                        <  2:4351777/93‑1 (MQ=255)

                                                  gcAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAAtgt                                       <  1:1713129/93‑1 (MQ=255)

                                                    aGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGc                                     >  2:2797303/1‑93 (MQ=255)

                                                    aGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGc                                     <  1:5277465/93‑1 (MQ=255)

                                                    aGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGc                                     <  2:5204817/93‑1 (MQ=255)

                                                    aGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGc                                     <  1:2773825/93‑1 (MQ=255)

                                                     gTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCg                                    >  2:506356/1‑93 (MQ=255)

                                                     gTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCAGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCg                                    <  2:4526977/93‑1 (MQ=255)

                                                      tCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGa                                   >  1:26599/1‑93 (MQ=255)

                                                      tCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGa                                   <  1:4287360/93‑1 (MQ=255)

                                                       cATGTTGCCGTTTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGAc                                  >  2:2571557/1‑93 (MQ=255)

                                                        aTGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACa                                 <  1:2368712/93‑1 (MQ=255)

                                                        aTGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACa                                 >  2:4673848/1‑93 (MQ=255)

                                                        aTGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACa                                 >  2:3378638/1‑93 (MQ=255)

                                                          gTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAAc                               >  1:3677140/1‑93 (MQ=255)

                                                             gCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTgg                            <  1:681492/93‑1 (MQ=255)

                                                             gCCGATTTGGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTgg                            <  2:5351977/93‑1 (MQ=255)

                                                              ccGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGt                           >  1:5902059/1‑93 (MQ=255)

                                                               cGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTggat                          >  1:867300/1‑91 (MQ=255)

                                                               cGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGtt                          <  2:5945982/93‑1 (MQ=255)

                                                               cGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGtt                          <  2:624408/93‑1 (MQ=255)

                                                                 aTTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGc                        <  2:4796434/93‑1 (MQ=255)

                                                                 aTTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGc                        <  2:5809928/93‑1 (MQ=255)

                                                                 aTTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGc                        <  1:1082496/93‑1 (MQ=255)

                                                                 aTTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGc                        <  1:1060046/93‑1 (MQ=255)

                                                                 aTTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGc                        <  1:3791498/93‑1 (MQ=255)

                                                                 aTTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGc                        <  1:500205/93‑1 (MQ=255)

                                                                 aTTTTGGTATCTGTGTCGACTCCCGCTGGAAGAACCGCGGCGTCGCGAGCGCCCTGATGCGAGAGATGATTGAACTGTGCGACAACTGGTTGc                        <  1:6044883/93‑1 (MQ=255)

                                                                  ttttGGTATCTGTGTCGCCTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCg                       <  1:5844914/93‑1 (MQ=255)

                                                                     tGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGt                    <  1:6075734/93‑1 (MQ=255)

                                                                     tGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGt                    <  1:5549984/93‑1 (MQ=255)

                                                                       gTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAg                  <  2:5238489/93‑1 (MQ=255)

                                                                        tATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGa                 >  2:648262/1‑93 (MQ=255)

                                                                         aTCTGTGTCGACTCTCGCTGGAAGACCCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGAt                <  1:1125080/93‑1 (MQ=255)

                                                                            tgtgTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGATCGc             >  1:4869002/1‑93 (MQ=255)

                                                                            tgtgTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGATCGc             <  2:5608661/93‑1 (MQ=255)

                                                                            tgtgTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGATCGc             <  2:4464645/93‑1 (MQ=255)

                                                                             gtgtCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGATCGCa            >  1:5388031/1‑93 (MQ=255)

                                                                              tgtCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGATCGCAt           <  2:6184274/93‑1 (MQ=255)

                                                                               gtCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGATCGCAtt          <  1:5236434/93‑1 (MQ=255)

                                                                                  gACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGGAGATCGCATTGaa       >  1:2332006/1‑93 (MQ=255)

                                                                                   aCTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGATCGCATTGAAc      <  1:1485131/93‑1 (MQ=255)

                                                                                    ctctCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGATCGCATTGAACt     <  2:3790763/93‑1 (MQ=255)

                                                                                    ctctCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGATCGCATTGAACt     >  1:3554588/1‑93 (MQ=255)

                                                                                      ctcGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATTCGCGACAACTGGTTGCGGGTAGATCGCATTGAACTac   >  2:3193041/1‑92 (MQ=255)

                                                                                      ctcGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGATCGCATTGAACTaa   <  2:180372/93‑1 (MQ=255)

                                                                                       tcGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGATCGCATTGAACTAAc  <  1:3939956/93‑1 (MQ=255)

TGGAGACGTCGTGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGTTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGATCGCATTGAACTAAC  >  NC_000913/3578945‑3579124

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GATGGAGACGTCGTGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGTTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGATCGCATTGAACTAACC  >  NC_000913/3578943‑3579125

GATGGAGACGTCGTGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCT                                                                                           <  SRR4302534.3543643/94‑1 (MQ=60)

 ATGGAGACGTCGTGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTG                                                                                          <  SRR4302534.1387258/94‑1 (MQ=60)

  TGGAGACGTCGTGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGG                                                                                         <  SRR4302534.602089/94‑1 (MQ=60)

  TGGAGACGTCGTGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGG                                                                                         <  SRR4302534.6196100/94‑1 (MQ=60)

  TGGAGACGTCGTGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGG                                                                                         <  SRR4302534.1182041/94‑1 (MQ=60)

   GGAGACGTCGTGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGA                                                                                        <  SRR4302534.3681402/94‑1 (MQ=60)

    GAGACGTCGTGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAA                                                                                       >  SRR4302534.3581515/1‑94 (MQ=60)

    GAGACGTCGTGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAA                                                                                       >  SRR4302534.524234/1‑94 (MQ=60)

      GACGTCGTGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGA                                                                                     >  SRR4302534.5677836/1‑94 (MQ=60)

      GACGTCGTGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTAGCTGGAAGA                                                                                     >  SRR4302534.1712681/1‑94 (MQ=60)

         GTCGTGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACC                                                                                  >  SRR4302534.3972323/1‑94 (MQ=60)

          TCGTGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCG                                                                                 <  SRR4302534.3155680/94‑1 (MQ=60)

           CGTGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGC                                                                                <  SRR4302534.2400890/94‑1 (MQ=60)

            GTGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTTATGTTGCCTATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCG                                                                               <  SRR4302534.4132644/94‑1 (MQ=60)

            GTGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCG                                                                               <  SRR4302534.2117393/94‑1 (MQ=60)

            GTGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCG                                                                               <  SRR4302534.4766646/94‑1 (MQ=60)

            GTGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCG                                                                               <  SRR4302534.423661/94‑1 (MQ=60)

             TGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGG                                                                              >  SRR4302534.689410/1‑94 (MQ=60)

              GGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGC                                                                             >  SRR4302534.337695/1‑94 (MQ=60)

               GGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTTGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCG                                                                            >  SRR4302534.4097023/1‑94 (MQ=60)

               GGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCG                                                                            >  SRR4302534.4251287/1‑94 (MQ=60)

               GGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCG                                                                            >  SRR4302534.4344595/1‑94 (MQ=60)

               GGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCG                                                                            >  SRR4302534.3571321/1‑94 (MQ=60)

                 CCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTC                                                                          <  SRR4302534.3739471/94‑1 (MQ=60)

                  CATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCG                                                                         >  SRR4302534.2777867/1‑94 (MQ=60)

                    TCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCC                                                                       >  SRR4302534.1110236/1‑94 (MQ=60)

                    TCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGCCGACTCTCGCTGGAAGAACCGCGGCGTCGCC                                                                       <  SRR4302534.3385692/94‑1 (MQ=60)

                     CTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCA                                                                      <  SRR4302534.4507402/94‑1 (MQ=60)

                         CCATTGACGTGCAACAGCGCCCAGGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGC                                                                  <  SRR4302534.4106888/94‑1 (MQ=60)

                         CCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGC                                                                  <  SRR4302534.1396611/94‑1 (MQ=60)

                         CCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGC                                                                  >  SRR4302534.3598762/1‑94 (MQ=60)

                            TTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCT                                                               <  SRR4302534.1181582/94‑1 (MQ=60)

                             TGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTG                                                              >  SRR4302534.398136/1‑94 (MQ=60)

                               ACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGAT                                                            <  SRR4302534.3011796/94‑1 (MQ=60)

                                 GTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGGCTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGC                                                          <  SRR4302534.138370/94‑1 (MQ=60)

                                  TGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCG                                                         <  SRR4302534.1941120/94‑1 (MQ=60)

                                    CAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAG                                                       <  SRR4302534.776833/94‑1 (MQ=60)

                                    CAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAAACGCGGCGTCGCCAGCGCCCTGATGCGAG                                                       >  SRR4302534.5243466/1‑94 (MQ=60)

                                     AACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGA                                                      >  SRR4302534.4091993/1‑94 (MQ=60)

                                      ACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAG                                                     >  SRR4302534.5317063/1‑94 (MQ=60)

                                       CAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGA                                                    >  SRR4302534.649266/1‑94 (MQ=60)

                                         GCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATG                                                  >  SRR4302534.3951542/1‑94 (MQ=60)

                                         GCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATG                                                  >  SRR4302534.5270543/1‑94 (MQ=60)

                                         GCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATG                                                  >  SRR4302534.973212/1‑94 (MQ=60)

                                           GCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTTGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGAT                                                <  SRR4302534.3581026/94‑1 (MQ=60)

                                           GCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGAT                                                >  SRR4302534.3497599/1‑94 (MQ=60)

                                           GCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGAT                                                >  SRR4302534.5326850/1‑94 (MQ=60)

                                           GCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGAT                                                <  SRR4302534.1281793/94‑1 (MQ=60)

                                           GCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGAT                                                <  SRR4302534.6402969/94‑1 (MQ=60)

                                           GCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGAT                                                >  SRR4302534.3284293/1‑94 (MQ=60)

                                            CCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATT                                               <  SRR4302534.1780037/94‑1 (MQ=60)

                                             CCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTG                                              <  SRR4302534.6567249/94‑1 (MQ=60)

                                              CACGCCGCAGTCATGTTGGCGATTTTGGTATGTGTGTCGACTGTCGCTGGAAGAACCGGGGAGGCGGCAGCGCCCTGATGCGAGAGATGAGTGA                                             >  SRR4302534.2218607/1‑94 (MQ=55)

                                              CACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGA                                             <  SRR4302534.5918954/94‑1 (MQ=60)

                                              CACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGA                                             >  SRR4302534.1333938/1‑94 (MQ=60)

                                              CACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGA                                             <  SRR4302534.654110/94‑1 (MQ=60)

                                               ACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAA                                            >  SRR4302534.1433245/1‑94 (MQ=60)

                                               ACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAA                                            >  SRR4302534.5863428/1‑94 (MQ=60)

                                                CGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAA                                           >  SRR4302534.883916/1‑94 (MQ=60)

                                                  CCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATG                                         <  SRR4302534.2352851/94‑1 (MQ=60)

                                                    GCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTG                                       <  SRR4302534.1757627/94‑1 (MQ=60)

                                                      AGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCG                                     <  SRR4302534.2846813/94‑1 (MQ=60)

                                                      AGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCG                                     <  SRR4302534.5419964/94‑1 (MQ=60)

                                                      AGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCG                                     <  SRR4302534.3513340/94‑1 (MQ=60)

                                                       GTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGA                                    >  SRR4302534.27304/1‑94 (MQ=60)

                                                        TCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGAC                                   <  SRR4302534.4403509/94‑1 (MQ=60)

                                                          ATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAA                                 >  SRR4302534.2756985/1‑94 (MQ=60)

                                                          ATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAA                                 >  SRR4302534.2641477/1‑94 (MQ=60)

                                                          ATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAA                                 <  SRR4302534.2431600/94‑1 (MQ=60)

                                                           TGTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAAC                                >  SRR4302534.3776002/1‑94 (MQ=60)

                                                            GTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACT                               >  SRR4302534.4264306/1‑94 (MQ=60)

                                                            GTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACT                               <  SRR4302534.377305/94‑1 (MQ=60)

                                                            GTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACT                               >  SRR4302534.5032431/1‑94 (MQ=60)

                                                            GTTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACT                               <  SRR4302534.5119474/94‑1 (MQ=60)

                                                             TTGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTG                              <  SRR4302534.6440991/94‑1 (MQ=60)

                                                              TGCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGG                             <  SRR4302534.237721/94‑1 (MQ=60)

                                                               GCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGT                            >  SRR4302534.6062304/1‑94 (MQ=60)

                                                               GCCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGT                            <  SRR4302534.698139/94‑1 (MQ=60)

                                                                CCGATTTTGGTATCTGTGTCGACTGTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTT                           <  SRR4302534.2251131/94‑1 (MQ=60)

                                                                CCGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGAT                           >  SRR4302534.889197/1‑94 (MQ=60)

                                                                 CGATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTG                          <  SRR4302534.5525890/94‑1 (MQ=60)

                                                                   ATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCG                        <  SRR4302534.1110639/94‑1 (MQ=60)

                                                                   ATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCG                        <  SRR4302534.1087517/94‑1 (MQ=60)

                                                                   ATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCG                        <  SRR4302534.3893286/94‑1 (MQ=60)

                                                                   ATTTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCG                        <  SRR4302534.512669/94‑1 (MQ=60)

                                                                   ATTTTGGTATCTGTGTCGACTCCCGCTGGAAGAACCGCGGCGTCGCGAGCGCCCTGATGCGAGAGATGATTGAACTGTGCGACAACTGGTTGCG                        <  SRR4302534.6209203/94‑1 (MQ=60)

                                                                    TTTTGGTATCTGTGTCGCCTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGG                       <  SRR4302534.6003596/94‑1 (MQ=60)

                                                                     TTTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGG                      <  SRR4302534.5417801/94‑1 (MQ=60)

                                                                      TTGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGT                     <  SRR4302534.1484261/94‑1 (MQ=60)

                                                                       TGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTA                    <  SRR4302534.6240930/94‑1 (MQ=60)

                                                                       TGGTATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTA                    <  SRR4302534.5699787/94‑1 (MQ=60)

                                                                          TATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGAT                 >  SRR4302534.3897584/1‑94 (MQ=60)

                                                                           ATCTGTGTCGACTCTCGCTGGAAGACCCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGATC                <  SRR4302534.1154485/94‑1 (MQ=60)

                                                                           ATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGATC                <  SRR4302534.1117359/94‑1 (MQ=60)

                                                                           ATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGATC                >  SRR4302534.2124092/1‑94 (MQ=60)

                                                                           ATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGATC                <  SRR4302534.281940/94‑1 (MQ=60)

                                                                           ATCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGATC                >  SRR4302534.6219701/1‑94 (MQ=60)

                                                                            TCTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGATCG               <  SRR4302534.598479/94‑1 (MQ=60)

                                                                             CTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGATCGC              >  SRR4302534.5001074/1‑94 (MQ=60)

                                                                             CTGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGATCGC              >  SRR4302534.2662055/1‑94 (MQ=60)

                                                                              TGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGATCGCA             >  SRR4302534.5533147/1‑94 (MQ=60)

                                                                              TGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGATCGCA             >  SRR4302534.4773379/1‑94 (MQ=60)

                                                                              TGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGATCGCA             >  SRR4302534.1779923/1‑94 (MQ=60)

                                                                              TGTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAANNTGCNACAACTGGTTGCGNGNAGATCNCA             >  SRR4302534.3576455/1‑94 (MQ=60)

                                                                               GTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGATCGCAT            <  SRR4302534.1580488/94‑1 (MQ=60)

                                                                               GTGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGGAGATCGCAT            >  SRR4302534.3614396/1‑94 (MQ=60)

                                                                                TGTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGATCGCATT           <  SRR4302534.3095631/94‑1 (MQ=60)

                                                                                 GTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGATCGCATTG          <  SRR4302534.563095/94‑1 (MQ=60)

                                                                                 GTCGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGATCGCATTG          <  SRR4302534.5377807/94‑1 (MQ=60)

                                                                                   CGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGATCGCATTGAA        <  SRR4302534.513818/94‑1 (MQ=60)

                                                                                   CGACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGGAGATCGCATTGAA        >  SRR4302534.2393867/1‑94 (MQ=60)

                                                                                     ACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGATCGCATTGAACT      <  SRR4302534.6035859/94‑1 (MQ=60)

                                                                                     ACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGATCGCATTGAACT      >  SRR4302534.3650187/1‑94 (MQ=60)

                                                                                     ACTCTCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGATCGCATTGAACT      <  SRR4302534.1524205/94‑1 (MQ=60)

                                                                                         TCGCTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGATCGCATTGAACTAACC  <  SRR4302534.4045473/94‑1 (MQ=60)

GATGGAGACGTCGTGGGCCATCTCACCATTGACGTGCAACAGCGCCCACGCCGCAGTCATGTTGCCGATTTTGGTATCTGTGTCGACTCTCGTTGGAAGAACCGCGGCGTCGCCAGCGCCCTGATGCGAGAGATGATTGAAATGTGCGACAACTGGTTGCGGGTAGATCGCATTGAACTAACC  >  NC_000913/3578943‑3579125

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`