Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	744	338.8	17650688	97.8%	17262372	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,580,138	A→G	L215L (CTA→CTG)	yhhZ →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,580,138	0	A	G	99.7%	1070.7 / NA	303	L215L (CTA→CTG)	yhhZ	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (128/174); total (128/175)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 306 total aligned reads displayed.

GGTGGCGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTAAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATAG  >  NC_000913/3580049‑3580227

ggtggCGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAAt                                                                                        <  1:5766125/93‑1 (MQ=255)

ggtggCGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAAt                                                                                        <  1:6162287/93‑1 (MQ=255)

 gtggCGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATg                                                                                       <  1:7607294/93‑1 (MQ=255)

  tggCGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGa                                                                                      <  2:3627187/93‑1 (MQ=255)

    gCGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGaaa                                                                                    >  1:1616062/1‑93 (MQ=255)

      gTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGaaaaa                                                                                  >  1:4149407/1‑93 (MQ=255)

      gTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGaaaaa                                                                                  >  2:2539713/1‑93 (MQ=255)

      gTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGaaaaa                                                                                  >  1:4611743/1‑93 (MQ=255)

      gTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGaaaaa                                                                                  <  2:4438638/93‑1 (MQ=255)

      gTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGaaaaa                                                                                  <  2:400519/93‑1 (MQ=255)

       tataCAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGaaaaaa                                                                                 >  2:3297972/1‑93 (MQ=255)

         taCAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAAAAAAAGGCTATGATCAAATACTGAATGAAAAAACa                                                                               <  2:7585446/93‑1 (MQ=255)

          aCAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAg                                                                              >  1:8410171/1‑93 (MQ=255)

           cAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGc                                                                             >  2:6605864/1‑93 (MQ=255)

            aaTGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCg                                                                            <  2:4358354/93‑1 (MQ=255)

            aaTGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCg                                                                            >  2:198427/1‑93 (MQ=255)

             aTGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCgg                                                                           >  1:1854822/1‑93 (MQ=255)

             aTGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCgg                                                                           >  1:4069092/1‑93 (MQ=255)

                ggAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCa                                                                        >  2:5148015/1‑93 (MQ=255)

                ggAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCa                                                                        <  2:1897648/93‑1 (MQ=255)

                ggAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCa                                                                        >  1:2129070/1‑93 (MQ=255)

                 gAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCAt                                                                       <  1:1429699/93‑1 (MQ=255)

                  aaCATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATa                                                                      <  2:4642735/93‑1 (MQ=255)

                   aCATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAg                                                                     >  1:8693448/1‑93 (MQ=255)

                       tGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGAt                                                                 >  1:7382409/1‑93 (MQ=255)

                        gAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATa                                                                >  2:4746157/1‑93 (MQ=255)

                         aatgATTCAGAGATACTGCTGAAAAACTGGGTGTAGATGCAATAAAAGGCTATGATCAAATACTGAAAGAAAAAACAGCGGGCAGAGCGATAg                                                               <  2:2380891/90‑1 (MQ=255)

                         aaGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAg                                                               >  2:2696489/1‑93 (MQ=255)

                         aaGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAg                                                               <  1:1225449/93‑1 (MQ=255)

                          aGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGc                                                              >  2:1481627/1‑93 (MQ=255)

                            gATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCaa                                                            >  2:1284329/1‑93 (MQ=255)

                            gATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCaa                                                            <  1:5484520/93‑1 (MQ=255)

                             aTTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAAc                                                           >  2:728180/1‑93 (MQ=255)

                              ttCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACa                                                          <  2:276096/93‑1 (MQ=255)

                              ttCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACa                                                          <  2:6120353/93‑1 (MQ=255)

                                 agagATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGcg                                                       >  2:640163/1‑92 (MQ=255)

                                  gagaTACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCAt                                                      <  1:5656921/93‑1 (MQ=255)

                                   agaTACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATc                                                     >  1:916632/1‑93 (MQ=255)

                                   agaTACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATc                                                     <  1:4743655/93‑1 (MQ=255)

                                   agaTACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATc                                                     <  2:8638119/93‑1 (MQ=255)

                                    gaTACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCt                                                    <  2:2893774/93‑1 (MQ=255)

                                     aTACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTa                                                   >  1:3884637/1‑93 (MQ=255)

                                      tACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTAt                                                  >  1:5866207/1‑93 (MQ=255)

                                      tACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTAt                                                  <  1:3197488/93‑1 (MQ=255)

                                      tACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTAt                                                  <  2:8229937/93‑1 (MQ=255)

                                       aCTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTAtt                                                 <  2:554227/93‑1 (MQ=255)

                                       aCTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTAtt                                                 >  1:7971053/1‑93 (MQ=255)

                                            ggAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCtttt                                            >  2:2945470/1‑93 (MQ=255)

                                               aaaaCTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAAc                                         >  2:4623786/1‑93 (MQ=255)

                                               aaaaCTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAAc                                         <  1:1058492/93‑1 (MQ=255)

                                               aaaaCTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAAc                                         <  1:3257528/93‑1 (MQ=255)

                                                aaaCTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACa                                        <  1:4501077/93‑1 (MQ=255)

                                                  aCTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACaaa                                      >  2:8767931/1‑93 (MQ=255)

                                                  aCTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACaaa                                      >  1:8653635/1‑93 (MQ=255)

                                                  aCTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACaaa                                      <  2:6821900/93‑1 (MQ=255)

                                                   cTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAg                                     <  1:7266762/93‑1 (MQ=255)

                                                   cTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAg                                     >  1:4397815/1‑93 (MQ=255)

                                                   cTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAg                                     >  2:2988448/1‑93 (MQ=255)

                                                     gggTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCg                                   <  2:7382321/93‑1 (MQ=255)

                                                      ggTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGt                                  <  1:8783037/93‑1 (MQ=255)

                                                      ggTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGt                                  <  1:5412459/93‑1 (MQ=255)

                                                        tGGAGATGCAATAAAAGGCTATGATCAAATACTAAATGAAAAAACAGCGGGCATAGCGATGGCAACAGCATCTATTCTTTTAGCAAAGCGTTc                                <  1:7818603/93‑1 (MQ=255)

                                                         ggAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCt                               >  1:2426277/1‑93 (MQ=255)

                                                         ggAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCt                               <  2:6697113/93‑1 (MQ=255)

                                                           agaTGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTaa                             >  2:7759002/1‑93 (MQ=255)

                                                           agaTGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTaa                             <  1:3757855/93‑1 (MQ=255)

                                                            gaTGCAATAAAAGGCTGTGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAAt                            >  2:5792316/1‑93 (MQ=255)

                                                             aTGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATg                           >  1:6051574/1‑93 (MQ=255)

                                                              tGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGt                          >  1:2879497/1‑93 (MQ=255)

                                                               gCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGtt                         <  1:3053638/93‑1 (MQ=255)

                                                                cAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTg                        >  2:1646108/1‑93 (MQ=255)

                                                                cAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTg                        >  1:3088633/1‑93 (MQ=255)

                                                                 aaTAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGa                       >  1:1033523/1‑93 (MQ=255)

                                                                 aaTAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGa                       <  2:3772126/93‑1 (MQ=255)

                                                                   tAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATa                     <  2:5961665/93‑1 (MQ=255)

                                                                   tAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATa                     >  2:7881354/1‑93 (MQ=255)

                                                                    aaaaGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATAc                    >  2:4878435/1‑93 (MQ=255)

                                                                     aaaGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACa                   <  1:6406220/93‑1 (MQ=255)

                                                                      aaGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACat                  <  2:2282572/93‑1 (MQ=255)

                                                                       aGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACata                 >  2:6896729/1‑93 (MQ=255)

                                                                       aGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACata                 >  2:7177472/1‑93 (MQ=255)

                                                                        ggCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACatat                >  2:3094315/1‑93 (MQ=255)

                                                                        ggCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGAATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACatat                >  1:2622573/1‑93 (MQ=255)

                                                                          cTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATAc              <  1:4556491/93‑1 (MQ=255)

                                                                          cTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATAc              <  2:394054/93‑1 (MQ=255)

                                                                           tATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACa             >  2:8530932/1‑93 (MQ=255)

                                                                             tGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGa           >  1:7061703/1‑93 (MQ=255)

                                                                             tGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGa           >  2:8361526/1‑93 (MQ=255)

                                                                                tCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGaaat        <  2:1140632/93‑1 (MQ=255)

                                                                                tCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGaaat        >  2:5344708/1‑93 (MQ=255)

                                                                                   aaTACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGaaataaa     <  1:4848436/93‑1 (MQ=255)

                                                                                    aTACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGaaataagt    <  2:6469241/93‑3 (MQ=255)

                                                                                    aTACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGaaataaat    <  1:51525/93‑1 (MQ=255)

                                                                                    aTACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGaaataaaa    >  2:2690787/1‑92 (MQ=255)

                                                                                     tACTGAATGAAAAAACAGCGTGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAaataaata   <  1:4933567/93‑1 (MQ=255)

                                                                                     tACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAaataaata   <  1:3489791/93‑1 (MQ=255)

                                                                                     tACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAaataaata   <  1:6561078/93‑1 (MQ=255)

                                                                                     tACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTATTTTAACAAAGCGTTCTAATGTTGATACATATACAGAaataaata   <  2:8113413/93‑1 (MQ=255)

                                                                                      aCTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATAg  <  1:6767342/93‑1 (MQ=255)

                                                                                      aCTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATAg  <  1:5943177/93‑1 (MQ=255)

GGTGGCGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTAAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATAG  >  NC_000913/3580049‑3580227

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGCTGGTGGCGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTAAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATAGTTAC  >  NC_000913/3580045‑3580231

TGCTGGTGGCGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTG                                                                                               <  SRR4302541.4864343/94‑1 (MQ=60)

    GGTGGCGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATG                                                                                           <  SRR4302541.6225258/94‑1 (MQ=60)

    GGTGGCGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATG                                                                                           <  SRR4302541.5824805/94‑1 (MQ=60)

    GGTGGCGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATG                                                                                           <  SRR4302541.5531766/94‑1 (MQ=60)

    GGTGGCGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATG                                                                                           <  SRR4302541.379468/94‑1 (MQ=60)

     GTTGCGTAGACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGA                                                                                          <  SRR4302541.7688576/94‑1 (MQ=60)

     GTGGCGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGA                                                                                          <  SRR4302541.1061436/94‑1 (MQ=60)

     GTGGCGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGA                                                                                          <  SRR4302541.8915250/94‑1 (MQ=60)

     GTGGCGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGA                                                                                          <  SRR4302541.7688578/94‑1 (MQ=60)

     GTGGCGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGA                                                                                          <  SRR4302541.7688577/94‑1 (MQ=60)

      TGGCGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAA                                                                                         <  SRR4302541.4139712/94‑1 (MQ=60)

      TGGCGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAA                                                                                         >  SRR4302541.7215201/1‑94 (MQ=60)

       GGCGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAA                                                                                        <  SRR4302541.785877/94‑1 (MQ=60)

       GGCGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAA                                                                                        >  SRR4302541.1632105/1‑94 (MQ=60)

         CGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAA                                                                                      >  SRR4302541.996160/1‑94 (MQ=60)

         CGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAA                                                                                      <  SRR4302541.6210589/94‑1 (MQ=60)

         CGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAA                                                                                      >  SRR4302541.4190429/1‑94 (MQ=60)

         CGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAA                                                                                      >  SRR4302541.4658592/1‑94 (MQ=60)

          GTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAA                                                                                     >  SRR4302541.8804257/1‑94 (MQ=60)

             TACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAG                                                                                  >  SRR4302541.8501121/1‑94 (MQ=60)

                AATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGG                                                                               >  SRR4302541.4109256/1‑94 (MQ=60)

                AATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGG                                                                               >  SRR4302541.1872736/1‑94 (MQ=60)

                  TGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGC                                                                             <  SRR4302541.2709779/94‑1 (MQ=60)

                  TGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGC                                                                             <  SRR4302541.4936864/94‑1 (MQ=60)

                  TGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGC                                                                             <  SRR4302541.4648886/94‑1 (MQ=60)

                   GGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCA                                                                            >  SRR4302541.2149655/1‑94 (MQ=60)

                    GGAACATTGAAGGATTCAGATATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCAT                                                                           >  SRR4302541.1847255/1‑94 (MQ=60)

                     GAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATA                                                                          <  SRR4302541.6132218/94‑1 (MQ=60)

                     GAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATA                                                                          <  SRR4302541.1443606/94‑1 (MQ=60)

                     GAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATA                                                                          <  SRR4302541.8247882/94‑1 (MQ=60)

                      AACATTGAAGGATTCAGAGATACTGCGTAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAG                                                                         <  SRR4302541.6234000/94‑1 (MQ=60)

                      AACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAG                                                                         <  SRR4302541.60460/94‑1 (MQ=60)

                      AACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAG                                                                         >  SRR4302541.1851471/1‑94 (MQ=60)

                      AACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAG                                                                         >  SRR4302541.8786505/1‑94 (MQ=60)

                      AACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAG                                                                         >  SRR4302541.5411805/1‑94 (MQ=60)

                        CATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCG                                                                       >  SRR4302541.5756378/1‑94 (MQ=60)

                          TTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGAT                                                                     >  SRR4302541.7461335/1‑94 (MQ=60)

                          TTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGAT                                                                     <  SRR4302541.8782864/94‑1 (MQ=60)

                           TGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATA                                                                    <  SRR4302541.3987375/94‑1 (MQ=60)

                           TGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATA                                                                    <  SRR4302541.5456786/94‑1 (MQ=60)

                             AAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGC                                                                  <  SRR4302541.4114066/94‑1 (MQ=60)

                             AAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGC                                                                  <  SRR4302541.1237469/94‑1 (MQ=60)

                                GATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAAC                                                               <  SRR4302541.5540738/94‑1 (MQ=60)

                                 ATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACA                                                              <  SRR4302541.8674643/94‑1 (MQ=60)

                                  TTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAG                                                             <  SRR4302541.831266/94‑1 (MQ=60)

                                     AGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCAT                                                          <  SRR4302541.5200972/94‑1 (MQ=60)

                                     AGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCAT                                                          >  SRR4302541.3135331/1‑94 (MQ=60)

                                     AGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCAT                                                          >  SRR4302541.5896220/1‑94 (MQ=60)

                                     AGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCAT                                                          <  SRR4302541.7405127/94‑1 (MQ=60)

                                      GAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATC                                                         <  SRR4302541.5714697/94‑1 (MQ=60)

                                      GAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATC                                                         >  SRR4302541.925205/1‑94 (MQ=60)

                                      GAGATACTGCGGAAAAACTGGGCGGAGATGCAATAAAAGGGTATGATCAAATACTGAATGAAAAAACAGCTGGCATAGCGATAGCAACAGCATC                                                         <  SRR4302541.851397/94‑1 (MQ=60)

                                       AGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCT                                                        <  SRR4302541.4792098/94‑1 (MQ=60)

                                        GATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTA                                                       >  SRR4302541.3923617/1‑94 (MQ=60)

                                        GATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTA                                                       <  SRR4302541.7405730/94‑1 (MQ=60)

                                         ATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTAT                                                      >  SRR4302541.5925889/1‑94 (MQ=60)

                                          TACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATT                                                     <  SRR4302541.3229792/94‑1 (MQ=60)

                                          TACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATT                                                     >  SRR4302541.8058893/1‑94 (MQ=60)

                                           ACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTC                                                    <  SRR4302541.8702102/94‑1 (MQ=60)

                                            CTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCT                                                   >  SRR4302541.79367/1‑94 (MQ=60)

                                            CTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCT                                                   >  SRR4302541.5732184/1‑94 (MQ=60)

                                            CTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCT                                                   <  SRR4302541.8895611/94‑1 (MQ=60)

                                               CGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTT                                                <  SRR4302541.7918574/94‑1 (MQ=60)

                                                GGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTA                                               >  SRR4302541.4667809/1‑94 (MQ=60)

                                                 GAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAA                                              <  SRR4302541.464310/94‑1 (MQ=60)

                                                 GAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAA                                              >  SRR4302541.1900773/1‑94 (MQ=60)

                                                  AAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAAC                                             >  SRR4302541.211047/1‑94 (MQ=60)

                                                  AAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAAC                                             >  SRR4302541.1209617/1‑94 (MQ=60)

                                                   AAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACA                                            >  SRR4302541.1283602/1‑94 (MQ=60)

                                                   AAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACA                                            <  SRR4302541.1068323/94‑1 (MQ=60)

                                                   AAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACA                                            <  SRR4302541.3290417/94‑1 (MQ=60)

                                                    AAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAA                                           <  SRR4302541.4546482/94‑1 (MQ=60)

                                                     AACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAA                                          >  SRR4302541.8746292/1‑94 (MQ=60)

                                                     AACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAA                                          <  SRR4302541.3231653/94‑1 (MQ=60)

                                                      ACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAG                                         <  SRR4302541.3556902/94‑1 (MQ=60)

                                                      ACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAG                                         <  SRR4302541.6744380/94‑1 (MQ=60)

                                                      ACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAG                                         >  SRR4302541.4441803/1‑94 (MQ=60)

                                                      ACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAG                                         <  SRR4302541.4707164/94‑1 (MQ=60)

                                                      ACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAG                                         <  SRR4302541.873562/94‑1 (MQ=60)

                                                       CTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGC                                        <  SRR4302541.4866885/94‑1 (MQ=60)

                                                       CTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGC                                        <  SRR4302541.7344279/94‑1 (MQ=60)

                                                       CTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGC                                        <  SRR4302541.7344280/94‑1 (MQ=60)

                                                       CTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGC                                        <  SRR4302541.5960607/94‑1 (MQ=60)

                                                       CTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGC                                        <  SRR4302541.5960608/94‑1 (MQ=60)

                                                          GGTGGAGATGCAATAAAAGGGTATGATCAAACACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTT                                     <  SRR4302541.5467983/94‑1 (MQ=60)

                                                          GGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTT                                     <  SRR4302541.8876890/94‑1 (MQ=60)

                                                          GGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTT                                     <  SRR4302541.5467980/94‑1 (MQ=60)

                                                           GTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTC                                    <  SRR4302541.3053193/94‑1 (MQ=60)

                                                           GTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTC                                    >  SRR4302541.1349114/1‑94 (MQ=60)

                                                           GTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTC                                    <  SRR4302541.3483138/94‑1 (MQ=60)

                                                           GTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTC                                    >  SRR4302541.4433889/1‑94 (MQ=60)

                                                            TGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTTTTTTAACAAAGCGTTCT                                   >  SRR4302541.2450257/1‑94 (MQ=60)

                                                            TGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCT                                   >  SRR4302541.2450259/1‑94 (MQ=60)

                                                            TGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCT                                   >  SRR4302541.2788948/1‑94 (MQ=60)

                                                            TGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCT                                   <  SRR4302541.298406/94‑1 (MQ=60)

                                                            TGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCT                                   <  SRR4302541.8832828/94‑1 (MQ=60)

                                                            TGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCT                                   <  SRR4302541.110496/94‑1 (MQ=60)

                                                            TGGAGATGCAATAAAAGGCTATGATCAAATACTAAATGAAAAAACAGCGGGCATAGCGATGGCAACAGCATCTATTCTTTTAGCAAAGCGTTCT                                   <  SRR4302541.7903328/94‑1 (MQ=60)

                                                              GAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAGCAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAA                                 <  SRR4302541.3104119/94‑1 (MQ=60)

                                                              GAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAA                                 <  SRR4302541.3104118/94‑1 (MQ=60)

                                                               AGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAAT                                >  SRR4302541.5566631/1‑94 (MQ=60)

                                                               AGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAAT                                <  SRR4302541.3795623/94‑1 (MQ=60)

                                                                GATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATG                               <  SRR4302541.2464540/94‑1 (MQ=60)

                                                                GATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATG                               >  SRR4302541.6113445/1‑94 (MQ=60)

                                                                GATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATG                               <  SRR4302541.4517017/94‑1 (MQ=60)

                                                                GATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATG                               <  SRR4302541.4267700/94‑1 (MQ=60)

                                                                 ATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGT                              >  SRR4302541.2908395/1‑94 (MQ=60)

                                                                  TGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGTGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTT                             <  SRR4302541.3170093/94‑1 (MQ=60)

                                                                  TGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTT                             <  SRR4302541.5893702/94‑1 (MQ=60)

                                                                  TGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTT                             <  SRR4302541.4800921/94‑1 (MQ=60)

                                                                   GCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTG                            <  SRR4302541.3084557/94‑1 (MQ=60)

                                                                   GCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTG                            >  SRR4302541.3119963/1‑94 (MQ=60)

                                                                   GCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTG                            <  SRR4302541.7693718/94‑1 (MQ=60)

                                                                    CAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGA                           >  SRR4302541.4911334/1‑94 (MQ=60)

                                                                    CAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGA                           >  SRR4302541.1043064/1‑94 (MQ=60)

                                                                     AATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGAT                          >  SRR4302541.6498857/1‑94 (MQ=60)

                                                                     AATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGAT                          >  SRR4302541.2311970/1‑94 (MQ=60)

                                                                     AATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGAT                          >  SRR4302541.6498856/1‑94 (MQ=60)

                                                                     AATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGAT                          >  SRR4302541.1562819/1‑94 (MQ=60)

                                                                     AATAAAAGGCTATGATCAAATACTGAAGGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGAT                          <  SRR4302541.4575903/94‑1 (MQ=60)

                                                                      ATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTACTGTTGATA                         >  SRR4302541.6321345/1‑94 (MQ=60)

                                                                       TAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATAC                        >  SRR4302541.4578671/1‑94 (MQ=60)

                                                                        AAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACA                       <  SRR4302541.325754/94‑1 (MQ=60)

                                                                        AAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACA                       <  SRR4302541.3796691/94‑1 (MQ=60)

                                                                         AAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACAT                      <  SRR4302541.6471571/94‑1 (MQ=60)

                                                                           AGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATAT                    >  SRR4302541.405702/1‑94 (MQ=60)

                                                                           AGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATAT                    <  SRR4302541.4495235/94‑1 (MQ=60)

                                                                           AGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGAATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATAT                    >  SRR4302541.2648746/1‑94 (MQ=60)

                                                                            GGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATA                   >  SRR4302541.6943791/1‑94 (MQ=60)

                                                                             GCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATAC                  >  SRR4302541.2522615/1‑94 (MQ=60)

                                                                              CTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACA                 <  SRR4302541.5164955/94‑1 (MQ=60)

                                                                              CTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACA                 <  SRR4302541.4602601/94‑1 (MQ=60)

                                                                               TATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAG                <  SRR4302541.6133251/94‑1 (MQ=60)

                                                                               TATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAG                >  SRR4302541.4072949/1‑94 (MQ=60)

                                                                                ATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGA               >  SRR4302541.7136803/1‑94 (MQ=60)

                                                                                ATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGA               >  SRR4302541.5644934/1‑94 (MQ=60)

                                                                                  GATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAA             >  SRR4302541.6021037/1‑94 (MQ=60)

                                                                                  GATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAA             >  SRR4302541.6747674/1‑94 (MQ=60)

                                                                                   ATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAAT            >  SRR4302541.6876707/1‑94 (MQ=60)

                                                                                   ATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAAT            >  SRR4302541.1064177/1‑94 (MQ=60)

                                                                                     CAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCTTCAGCATCTATTCCTGTAACAAAGCGTTCTAGTATTGATACATACACAGAAATAA          <  SRR4302541.52802/94‑1 (MQ=60)

                                                                                     CAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAA          >  SRR4302541.1503036/1‑94 (MQ=60)

                                                                                       AATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAAT        <  SRR4302541.4897868/94‑1 (MQ=60)

                                                                                        ATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATA       <  SRR4302541.51928/94‑1 (MQ=60)

                                                                                        ATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATA       <  SRR4302541.3629951/94‑1 (MQ=60)

                                                                                         TACTGAATGAAAAAACAGCGTGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATAG      <  SRR4302541.4983906/94‑1 (MQ=60)

                                                                                         TACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATAG      <  SRR4302541.6628170/94‑1 (MQ=60)

                                                                                         TACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATAG      <  SRR4302541.3445832/94‑1 (MQ=60)

                                                                                         TACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATAG      <  SRR4302541.3524744/94‑1 (MQ=60)

                                                                                          ACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATAGT     <  SRR4302541.6839713/94‑1 (MQ=60)

                                                                                          ACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATAGT     >  SRR4302541.2987636/1‑94 (MQ=60)

                                                                                          ACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATAGT     <  SRR4302541.6003731/94‑1 (MQ=60)

                                                                                           CTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATAGTT    <  SRR4302541.1803127/94‑1 (MQ=60)

                                                                                           CTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATAGTT    >  SRR4302541.3704277/1‑94 (MQ=60)

                                                                                            TGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATAGTTA   <  SRR4302541.289014/94‑1 (MQ=60)

                                                                                            TGAATCAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATAGTTA   <  SRR4302541.1210120/94‑1 (MQ=60)

                                                                                             GAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATGTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATAGTTAC  >  SRR4302541.3387422/1‑94 (MQ=60)

                                                                                             GAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATAGTTAC  <  SRR4302541.6387612/94‑1 (MQ=60)

                                                                                             GAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATAGTTAC  <  SRR4302541.247474/94‑1 (MQ=60)

                                                                                             GAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATAGTTAC  <  SRR4302541.2466501/94‑1 (MQ=60)

                                                                                             GAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATAGTTAC  >  SRR4302541.658270/1‑94 (MQ=60)

TGCTGGTGGCGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTAAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATAGTTAC  >  NC_000913/3580045‑3580231

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`