Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,580,138 |
A→G |
L215L (CTA→CTG) |
yhhZ → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,580,138 | 0 | A | G | 100.0%
| 585.7
/ NA
| 164 | L215L (CTA→CTG) | yhhZ | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (65/99); total (65/99) |
Only 100 of 167 total aligned reads displayed.
TGGTGGCGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTAAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATAG > NC_000913/3580048‑3580227
|
tggtggCGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTgaa < 2:3920971/93‑1 (MQ=255)
ggtggCGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAAt > 2:1946532/1‑93 (MQ=255)
gtggCGTATACAATGGGAAGATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATg > 1:1472715/1‑93 (MQ=255)
cGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGaaaa < 1:3724958/93‑1 (MQ=255)
tataCAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGaaaaaa > 2:4251291/1‑93 (MQ=255)
ataCAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAAc < 2:5335827/93‑1 (MQ=255)
taCAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACa > 2:622603/1‑93 (MQ=255)
taCAATGGGAACATTGAAGGATTCAGAGATACTGCGAAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACa < 1:1253330/93‑1 (MQ=255)
aCAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAg > 2:291371/1‑93 (MQ=255)
cAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGc < 2:3797208/93‑1 (MQ=255)
aaTGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCg < 2:1557864/93‑1 (MQ=255)
aTGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCgg > 2:4472412/1‑93 (MQ=255)
aTGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCgg < 1:1711827/93‑1 (MQ=255)
aTGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCgg < 2:4117562/93‑1 (MQ=255)
gggAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGc < 2:3694024/93‑1 (MQ=255)
gggAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGc > 2:1077215/1‑93 (MQ=255)
ggAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCa < 1:298803/93‑1 (MQ=255)
aaCATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATa < 1:1752826/93‑1 (MQ=255)
cATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGc < 2:3346071/93‑1 (MQ=255)
cATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGc < 1:3739202/93‑1 (MQ=255)
aTTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCg > 2:5035608/1‑93 (MQ=255)
aTTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCg > 2:4142481/1‑93 (MQ=255)
ttGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGa > 2:3330353/1‑93 (MQ=255)
gAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATa < 2:19765/93‑1 (MQ=255)
aaGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAg > 1:1133659/1‑93 (MQ=255)
aaGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAg < 1:1119031/93‑1 (MQ=255)
aGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGc < 1:4312763/93‑1 (MQ=255)
ggATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCa < 1:4288096/93‑1 (MQ=255)
gATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCaa < 2:1723428/93‑1 (MQ=255)
aTTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAAc < 1:2668754/93‑1 (MQ=255)
ttCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACa < 1:2163481/93‑1 (MQ=255)
agagATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCa < 1:237704/93‑1 (MQ=255)
gagaTACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCAt > 1:4491649/1‑93 (MQ=255)
agaTACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATc < 2:2245243/93‑1 (MQ=255)
gaTACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCt > 2:2012891/1‑93 (MQ=255)
gaTACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCt < 2:4702600/93‑1 (MQ=255)
gaTACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCt < 2:4429419/93‑1 (MQ=255)
tACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTAt > 1:3914135/1‑93 (MQ=255)
tACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTAt < 1:3095541/93‑1 (MQ=255)
aCTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTAtt < 2:4811113/93‑1 (MQ=255)
aCTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTAtt > 2:5017603/1‑93 (MQ=255)
tGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCt > 2:3791185/1‑93 (MQ=255)
tGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCt < 1:3004675/93‑1 (MQ=255)
gCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCtt < 1:1240897/93‑1 (MQ=255)
gCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCtt < 2:5519250/93‑1 (MQ=255)
ggAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCtttt > 1:5964394/1‑93 (MQ=255)
ggAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCtttt < 2:6093278/93‑1 (MQ=255)
gAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTa < 1:4008567/93‑1 (MQ=255)
aaaaaCTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTaa > 2:100810/1‑93 (MQ=255)
aaaaCTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTaaa > 1:20917/1‑92 (MQ=255)
aaaaCTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAAc > 1:5461124/1‑93 (MQ=255)
aaaCTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACa > 2:2413790/1‑93 (MQ=255)
cTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAg < 2:2750205/93‑1 (MQ=255)
tGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGc < 1:1426264/93‑1 (MQ=255)
gggTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCg > 2:874948/1‑93 (MQ=255)
ggTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGt < 1:5057350/93‑1 (MQ=255)
gTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGtt < 1:2798892/93‑1 (MQ=255)
tGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTc < 1:4604481/93‑1 (MQ=255)
tGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTc < 1:6105390/93‑1 (MQ=255)
ggAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCt < 1:4772440/93‑1 (MQ=255)
gagaTGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTa > 2:3239511/1‑93 (MQ=255)
gaTGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAAt < 1:4604711/93‑1 (MQ=255)
tGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGt < 1:853363/93‑1 (MQ=255)
tGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGt < 2:5899649/93‑1 (MQ=255)
gCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGtt > 1:2046636/1‑93 (MQ=255)
cAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTg < 2:2336489/93‑1 (MQ=255)
aaTAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGa < 1:4694550/93‑1 (MQ=255)
aTAAAATCCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGAt < 2:1602131/93‑1 (MQ=255)
aaaaGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTACCAAAGCGTTCTAATGTTGATAc < 1:2522250/93‑1 (MQ=255)
aaaGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACa < 2:5733074/93‑1 (MQ=255)
aaaGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACa < 1:2688991/93‑1 (MQ=255)
aaaGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACa < 1:4206388/93‑1 (MQ=255)
cTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATAc < 1:5946481/93‑1 (MQ=255)
cTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATAc < 2:2157238/93‑1 (MQ=255)
tATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACa < 2:1616983/93‑1 (MQ=255)
tATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACa > 2:1240010/1‑93 (MQ=255)
tATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACa < 2:4815455/93‑1 (MQ=255)
aTGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAg < 1:5113193/93‑1 (MQ=255)
aTGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAg < 1:781676/93‑1 (MQ=255)
aTGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAg > 1:1611748/1‑93 (MQ=255)
aTGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAg < 2:3438007/93‑1 (MQ=255)
tCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGaaat > 2:5367506/1‑93 (MQ=255)
tCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGaaat < 2:6235864/93‑1 (MQ=255)
tCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGCTCTAATGTTGATACATATACAGaaat > 2:5810775/1‑93 (MQ=255)
cAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGaaata < 2:3045793/93‑1 (MQ=255)
cAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGaaata < 2:5706673/93‑1 (MQ=255)
aaaTACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGaaataa > 2:293161/1‑93 (MQ=255)
aaaTACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGaaataa > 1:2255490/1‑93 (MQ=255)
aaTACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGaaataaa < 1:1405408/93‑1 (MQ=255)
aaTACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGaaataaa < 2:5219805/93‑1 (MQ=255)
aaTACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGaaataaa > 2:3388085/1‑93 (MQ=255)
aaTACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGaaataaa < 1:1881311/93‑1 (MQ=255)
aaTACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGaaataaa > 1:5180511/1‑93 (MQ=255)
aTACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGaaataaat < 2:4929486/93‑1 (MQ=255)
aTACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGaaataaat > 1:185049/1‑93 (MQ=255)
tACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAaataaata > 2:826470/1‑93 (MQ=255)
tACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAaataaata > 1:4052094/1‑93 (MQ=255)
aCTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATAg < 2:5459777/93‑1 (MQ=255)
aCTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATAg > 2:2187627/1‑93 (MQ=255)
aCTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATAg > 1:4779110/1‑93 (MQ=255)
|
TGGTGGCGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTAAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATAG > NC_000913/3580048‑3580227
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGCTGGTGGCGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTAAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATAGTTAC > NC_000913/3580045‑3580231
|
TGCTGGTGGCGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTG < SRR4302534.3128372/94‑1 (MQ=60)
GCTGGTGGCGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGA > SRR4302534.6455462/1‑94 (MQ=60)
GCTGGTGGCGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGA < SRR4302534.2699397/94‑1 (MQ=60)
TGGTGGCGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAAT > SRR4302534.1284123/1‑94 (MQ=60)
GGTGGCGTATACAATGGGAAGATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATG > SRR4302534.1511461/1‑94 (MQ=60)
GGTGGCGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATG > SRR4302534.3643609/1‑94 (MQ=60)
TGGCGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAA < SRR4302534.5399535/94‑1 (MQ=60)
GCGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAA < SRR4302534.4163422/94‑1 (MQ=60)
CGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAA < SRR4302534.3825081/94‑1 (MQ=60)
GTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAA < SRR4302534.615448/94‑1 (MQ=60)
TACAATGGGAACATTGAAGGATTCAGAGATACTGCGAAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAG < SRR4302534.1286365/94‑1 (MQ=60)
ACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGC > SRR4302534.4091630/1‑94 (MQ=60)
CAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCG < SRR4302534.1677479/94‑1 (MQ=60)
AATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGG < SRR4302534.1507126/94‑1 (MQ=60)
ATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGG < SRR4302534.1756300/94‑1 (MQ=60)
TGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGC > SRR4302534.876477/1‑94 (MQ=60)
GGAACATTGAAGGATTCAGAGATGCTGCTGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCAT < SRR4302534.2045717/94‑1 (MQ=60)
GGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCAT < SRR4302534.1907343/94‑1 (MQ=60)
GGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCAT < SRR4302534.306528/94‑1 (MQ=60)
AACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAG < SRR4302534.1798343/94‑1 (MQ=60)
CATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCG < SRR4302534.3839667/94‑1 (MQ=60)
TGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATA > SRR4302534.2156066/1‑94 (MQ=60)
GAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAG > SRR4302534.1163294/1‑94 (MQ=60)
GAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAG < SRR4302534.2560844/94‑1 (MQ=60)
AAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGC < SRR4302534.1148263/94‑1 (MQ=60)
AGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCA < SRR4302534.4429589/94‑1 (MQ=60)
AGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCA < SRR4302534.4764073/94‑1 (MQ=60)
AGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCA < SRR4302534.3126812/94‑1 (MQ=60)
GGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAA < SRR4302534.4404267/94‑1 (MQ=60)
ATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACA < SRR4302534.2739283/94‑1 (MQ=60)
ATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACA > SRR4302534.5744668/1‑94 (MQ=60)
TTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAG < SRR4302534.2220622/94‑1 (MQ=60)
AGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCAT < SRR4302534.2776518/94‑1 (MQ=60)
AGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCAT < SRR4302534.243923/94‑1 (MQ=60)
AGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCAT > SRR4302534.4613186/1‑94 (MQ=60)
AGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAGACAGCGGGCATAGAGATAGCAACAGCATCT > SRR4302534.2958944/1‑94 (MQ=60)
ATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTAT > SRR4302534.4019077/1‑94 (MQ=60)
TACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATT < SRR4302534.3176974/94‑1 (MQ=60)
TACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATT < SRR4302534.2669931/94‑1 (MQ=60)
ACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTC < SRR4302534.1447833/94‑1 (MQ=60)
TGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTT < SRR4302534.3083276/94‑1 (MQ=60)
GCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTT < SRR4302534.1273601/94‑1 (MQ=60)
CGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTT > SRR4302534.6126348/1‑94 (MQ=60)
GAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAA < SRR4302534.4115901/94‑1 (MQ=60)
AAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAAC > SRR4302534.5608310/1‑94 (MQ=60)
AAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAAA > SRR4302534.21475/1‑94 (MQ=60)
TGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCG < SRR4302534.1463775/94‑1 (MQ=60)
GGTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTT < SRR4302534.5193954/94‑1 (MQ=60)
GTGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTC < SRR4302534.2872498/94‑1 (MQ=60)
TGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCT < SRR4302534.6271407/94‑1 (MQ=60)
TGGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCT < SRR4302534.4729430/94‑1 (MQ=60)
GGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTA < SRR4302534.4902015/94‑1 (MQ=60)
GGAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTA < SRR4302534.4437692/94‑1 (MQ=60)
GAGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAA > SRR4302534.4617033/1‑94 (MQ=60)
AGATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAAT > SRR4302534.4874813/1‑94 (MQ=60)
GATGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATG < SRR4302534.4729667/94‑1 (MQ=60)
TGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTT < SRR4302534.874894/94‑1 (MQ=60)
TGCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTT > SRR4302534.2100128/1‑94 (MQ=60)
GCAATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTG < SRR4302534.1179617/94‑1 (MQ=60)
AATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGAT < SRR4302534.4821964/94‑1 (MQ=60)
ATAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATA < SRR4302534.4351136/94‑1 (MQ=60)
TAAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATAC < SRR4302534.2308921/94‑1 (MQ=60)
AAAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTACCAAAGCGTTCTAATGTTGATACA < SRR4302534.2589200/94‑1 (MQ=60)
AAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACAT < SRR4302534.2760055/94‑1 (MQ=60)
AAAGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACAT < SRR4302534.4319925/94‑1 (MQ=60)
AGGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATAT < SRR4302534.6305957/94‑1 (MQ=60)
GGCTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATA > SRR4302534.3864349/1‑94 (MQ=60)
CTATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACA < SRR4302534.6107942/94‑1 (MQ=60)
TATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAG > SRR4302534.4922043/1‑94 (MQ=60)
TATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAG > SRR4302534.1653815/1‑94 (MQ=60)
ATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGA < SRR4302534.801172/94‑1 (MQ=60)
ATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGA < SRR4302534.5251184/94‑1 (MQ=60)
ATGATCAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGA < SRR4302534.5251183/94‑1 (MQ=60)
CAAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAA > SRR4302534.2315276/1‑94 (MQ=60)
AAATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAA > SRR4302534.5320118/1‑94 (MQ=60)
AATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAAT < SRR4302534.1930318/94‑1 (MQ=60)
AATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAAT < SRR4302534.1442372/94‑1 (MQ=60)
AATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAAT > SRR4302534.189912/1‑94 (MQ=60)
ATACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATA > SRR4302534.4160781/1‑94 (MQ=60)
TACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATAG > SRR4302534.1765957/1‑94 (MQ=60)
TACTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATAG > SRR4302534.4908887/1‑94 (MQ=60)
CTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATAGTT > SRR4302534.5402737/1‑94 (MQ=60)
CTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATAGTT < SRR4302534.554169/94‑1 (MQ=60)
CTGAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATAGTT < SRR4302534.298902/94‑1 (MQ=60)
GAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATAGTTAC > SRR4302534.4658938/1‑94 (MQ=60)
|
TGCTGGTGGCGTATACAATGGGAACATTGAAGGATTCAGAGATACTGCGGAAAAACTGGGTGGAGATGCAATAAAAGGCTATGATCAAATACTAAATGAAAAAACAGCGGGCATAGCGATAGCAACAGCATCTATTCTTTTAACAAAGCGTTCTAATGTTGATACATATACAGAAATAAATAGTTAC > NC_000913/3580045‑3580231
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
