Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,609,245	T→C	L54L (TTA→TTG)	yhhS ←	putative transport

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,609,245	0	T	C	100.0%	847.4 / NA	241	L54L (TTA→TTG)	yhhS	putative transport
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (107/134); total (107/134)

Only 100 of 245 total aligned reads displayed.

GCGGCTCAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGTAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGGCGCAATCCGTT  >  NC_000913/3609155‑3609334

gcggcTCAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCaa                                                                                         >  1:3459054/1‑93 (MQ=255)

gcggcTCAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCaa                                                                                         >  2:1432464/1‑93 (MQ=255)

  ggcTCAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATa                                                                                       >  2:1600037/1‑93 (MQ=255)

   gcTCAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATAc                                                                                      >  1:3725201/1‑93 (MQ=255)

     tCAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCCATACac                                                                                    >  1:4874036/1‑92 (MQ=255)

     tCAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACag                                                                                    <  1:5641035/93‑1 (MQ=255)

      cAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACagc                                                                                   >  2:540336/1‑93 (MQ=255)

      cAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGACCGGCCATACagc                                                                                   >  2:2764810/1‑93 (MQ=255)

       aGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACagcg                                                                                  <  2:2506723/93‑1 (MQ=255)

       aGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACagcg                                                                                  <  2:5560861/93‑1 (MQ=255)

        gCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACagcga                                                                                 <  1:1748489/93‑1 (MQ=255)

        gCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACagcga                                                                                 <  1:1691463/93‑1 (MQ=255)

         cAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACagcgag                                                                                >  2:740089/1‑93 (MQ=255)

         cAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACagcgag                                                                                >  1:3595774/1‑93 (MQ=255)

          aaGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACagcgagc                                                                               <  1:844353/93‑1 (MQ=255)

          aaGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACagcgagc                                                                               >  1:3387420/1‑93 (MQ=255)

          aaGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACagcgagc                                                                               <  2:2541837/93‑1 (MQ=255)

           aGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACagcgagcg                                                                              >  1:4747325/1‑93 (MQ=255)

            ggTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCgg                                                                             >  1:2941247/1‑93 (MQ=255)

             gTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGc                                                                            <  1:2463509/93‑1 (MQ=255)

             gTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGc                                                                            >  2:20278/1‑93 (MQ=255)

                  gAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAAccc                                                                       <  2:3348117/93‑1 (MQ=255)

                   aaaTATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCg                                                                      >  2:342570/1‑93 (MQ=255)

                    aaTATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGa                                                                     <  1:6115490/93‑1 (MQ=255)

                    aaTATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGa                                                                     <  1:1047329/93‑1 (MQ=255)

                     atatTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGAt                                                                    >  1:700025/1‑93 (MQ=255)

                      tatTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGCCATAGCCCGGCAATACAGCGAGCGGCAACCCGATg                                                                   <  1:2772904/93‑1 (MQ=255)

                       atTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATgg                                                                  <  1:3985721/93‑1 (MQ=255)

                         tGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTg                                                                >  1:5303121/1‑93 (MQ=255)

                          gCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGa                                                               <  2:507786/93‑1 (MQ=255)

                           cAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAg                                                              <  1:4238854/93‑1 (MQ=255)

                            aGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAgg                                                             >  1:4395386/1‑93 (MQ=255)

                            aGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAgg                                                             >  2:3637716/1‑93 (MQ=255)

                             ggCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGt                                                            >  1:5842157/1‑93 (MQ=255)

                             ggCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGt                                                            <  2:3288226/93‑1 (MQ=255)

                              gCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTa                                                           >  1:2202170/1‑93 (MQ=255)

                               cTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAg                                                          <  1:3177373/93‑1 (MQ=255)

                               cTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAg                                                          >  1:3805897/1‑93 (MQ=255)

                                tGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGc                                                         <  1:1342533/93‑1 (MQ=255)

                                tGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGc                                                         >  2:690696/1‑93 (MQ=255)

                                 gATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCt                                                        >  2:6039788/1‑93 (MQ=255)

                                  aTAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTg                                                       >  2:2997939/1‑93 (MQ=255)

                                   tAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTgg                                                      >  2:1765223/1‑93 (MQ=255)

                                    aaCCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGCTGGTGAGGCAGCTGGc                                                     >  2:910459/1‑93 (MQ=255)

                                    aaCCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGGAGCTGGc                                                     >  2:1208871/1‑93 (MQ=255)

                                      ccAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGa                                                   >  2:5541691/1‑93 (MQ=255)

                                       cAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGaa                                                  >  2:4634383/1‑93 (MQ=255)

                                       cAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGaa                                                  >  2:1688508/1‑93 (MQ=255)

                                        aaTCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAg                                                 >  1:2899559/1‑93 (MQ=255)

                                         aTCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGTCATAGCCCGGCAATCCAGCGAGCGGCAGCCCGATGGTGAGGTAGCTGGCGAAGt                                                <  2:2931139/93‑1 (MQ=255)

                                         aTCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGt                                                <  1:2007766/93‑1 (MQ=255)

                                         aTCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGt                                                <  2:4523033/93‑1 (MQ=255)

                                         aTCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGt                                                <  2:5846901/93‑1 (MQ=255)

                                         aTCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGt                                                >  1:5562482/1‑93 (MQ=255)

                                          tCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGtt                                               >  2:5666117/1‑93 (MQ=255)

                                             tGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTaaa                                            >  2:5188379/1‑93 (MQ=255)

                                              gCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAAc                                           <  1:5760564/93‑1 (MQ=255)

                                               cccAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACa                                          <  2:2701518/93‑1 (MQ=255)

                                               cccAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACa                                          <  2:6095929/93‑1 (MQ=255)

                                                ccAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACAt                                         >  1:1231139/1‑93 (MQ=255)

                                                 cAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATg                                        >  1:3123204/1‑93 (MQ=255)

                                                 cAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATg                                        <  2:3114055/93‑1 (MQ=255)

                                                   gAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGAc                                      <  2:3135959/93‑1 (MQ=255)

                                                     aGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACta                                    >  2:3845324/1‑93 (MQ=255)

                                                      ggCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACtat                                   <  2:4128085/93‑1 (MQ=255)

                                                       gcgcTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACtata                                  <  1:2718986/93‑1 (MQ=255)

                                                       gcgcTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACtata                                  <  1:1439719/93‑1 (MQ=255)

                                                         gcTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATaga                                >  1:1254159/1‑93 (MQ=255)

                                                         gcTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATaga                                <  2:25679/93‑1 (MQ=255)

                                                          cTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATagag                               >  1:361507/1‑93 (MQ=255)

                                                          cTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATagag                               <  1:53068/93‑1 (MQ=255)

                                                          cTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATagag                               <  1:4310194/93‑1 (MQ=255)

                                                           tAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAgaga                              <  1:4536286/93‑1 (MQ=255)

                                                            aaaGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGAc                             >  1:961831/1‑93 (MQ=255)

                                                             aaGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACa                            >  1:6162472/1‑93 (MQ=255)

                                                             aaGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACa                            <  2:5276004/93‑1 (MQ=255)

                                                              aGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACaa                           <  2:6332409/93‑1 (MQ=255)

                                                              aGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACaa                           >  2:3996254/1‑93 (MQ=255)

                                                               gCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAAt                          >  1:1895370/1‑93 (MQ=255)

                                                                cccATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATg                         <  1:6367600/93‑1 (MQ=255)

                                                                cccATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATg                         <  1:4037593/93‑1 (MQ=255)

                                                                 ccATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATgc                        >  1:1625113/1‑93 (MQ=255)

                                                                 ccATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATgc                        <  2:3906780/93‑1 (MQ=255)

                                                                 ccATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATgc                        <  1:1823248/93‑1 (MQ=255)

                                                                 ccATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATgc                        <  2:79244/93‑1 (MQ=255)

                                                                      ccatcatGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCaaa                   <  2:2735992/92‑1 (MQ=255)

                                                                      acatcaTGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCaaa                   >  1:865638/1‑93 (MQ=255)

                                                                       catcatGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAAt                  <  2:4947312/93‑1 (MQ=255)

                                                                       catcatGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAAt                  >  1:5393909/1‑93 (MQ=255)

                                                                       catcatGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAAt                  <  1:6431867/93‑1 (MQ=255)

                                                                           atGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAg              <  2:5390645/93‑1 (MQ=255)

                                                                           atGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAg              <  2:5932381/93‑1 (MQ=255)

                                                                           atGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAg              >  1:5183154/1‑93 (MQ=255)

                                                                                cATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGGCGCa         >  1:5102843/1‑93 (MQ=255)

                                                                                 aTAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGGCGCaa        <  2:2423984/93‑1 (MQ=255)

                                                                                    gCCCGGCACTACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGGCGCAATcc     >  1:6318661/1‑93 (MQ=255)

                                                                                      ccGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGGCGCAATCCGt   <  1:2382926/93‑1 (MQ=255)

                                                                                      ccGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGGCGCAATCCGt   <  2:2438852/93‑1 (MQ=255)

                                                                                      ccGGAAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGGCGCAATCCGt   <  2:4895446/93‑1 (MQ=255)

                                                                                       cGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGGCGCAATCCGtt  >  2:87587/1‑93 (MQ=255)

GCGGCTCAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGTAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGGCGCAATCCGTT  >  NC_000913/3609155‑3609334

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGCGGCTCAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGTAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGGCGCAATCCGTTTAGC  >  NC_000913/3609154‑3609338

GGCGGCTCAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAA                                                                                             >  SRR4302534.3552037/1‑94 (MQ=60)

 GCGGCTCAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAAT                                                                                            <  SRR4302534.2806959/94‑1 (MQ=60)

 GCGGCTCAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAAT                                                                                            <  SRR4302534.6309772/94‑1 (MQ=60)

  CGGCTCAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATA                                                                                           <  SRR4302534.2307478/94‑1 (MQ=60)

   GGCTCAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATAC                                                                                          >  SRR4302534.3825334/1‑94 (MQ=60)

   GGCTCAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATAC                                                                                          >  SRR4302534.1771120/1‑94 (MQ=60)

    GCTCAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACA                                                                                         <  SRR4302534.488941/94‑1 (MQ=60)

     CTCAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAG                                                                                        <  SRR4302534.4382218/94‑1 (MQ=60)

     CTCAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAG                                                                                        <  SRR4302534.4684156/94‑1 (MQ=60)

     CTCAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAG                                                                                        <  SRR4302534.6214036/94‑1 (MQ=60)

      TCAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGC                                                                                       <  SRR4302534.4106282/94‑1 (MQ=60)

      TCAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGC                                                                                       <  SRR4302534.5793717/94‑1 (MQ=60)

       CAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCG                                                                                      <  SRR4302534.5482314/94‑1 (MQ=60)

        AGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGA                                                                                     >  SRR4302534.5559236/1‑94 (MQ=60)

        AGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGA                                                                                     >  SRR4302534.4860480/1‑94 (MQ=60)

        AGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGA                                                                                     <  SRR4302534.463024/94‑1 (MQ=60)

        AGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGA                                                                                     <  SRR4302534.5018868/94‑1 (MQ=60)

         GCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAG                                                                                    <  SRR4302534.1735426/94‑1 (MQ=60)

         GCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAG                                                                                    <  SRR4302534.1793867/94‑1 (MQ=60)

         GCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAG                                                                                    >  SRR4302534.3692488/1‑94 (MQ=60)

          CAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGC                                                                                   >  SRR4302534.3478269/1‑94 (MQ=60)

          CAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGC                                                                                   >  SRR4302534.1442295/1‑94 (MQ=60)

          CAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGC                                                                                   <  SRR4302534.2133357/94‑1 (MQ=60)

           AAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCG                                                                                  >  SRR4302534.338262/1‑94 (MQ=60)

           AAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCG                                                                                  >  SRR4302534.450183/1‑94 (MQ=60)

           AAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCG                                                                                  <  SRR4302534.865626/94‑1 (MQ=60)

           AAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCG                                                                                  >  SRR4302534.4876192/1‑94 (MQ=60)

            AGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGG                                                                                 >  SRR4302534.3914548/1‑94 (MQ=60)

            AGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGG                                                                                 >  SRR4302534.3018423/1‑94 (MQ=60)

             GGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGATATAGCCCGGCAATACAGCGAGCGGC                                                                                <  SRR4302534.3709159/94‑1 (MQ=60)

              GTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCA                                                                               <  SRR4302534.2528956/94‑1 (MQ=60)

              GTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCA                                                                               <  SRR4302534.5364076/94‑1 (MQ=60)

                 GCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACC                                                                            <  SRR4302534.5512548/94‑1 (MQ=60)

                     AATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGAT                                                                        <  SRR4302534.6281854/94‑1 (MQ=60)

                     AATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGAT                                                                        >  SRR4302534.717170/1‑94 (MQ=60)

                     AATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGAT                                                                        <  SRR4302534.1074415/94‑1 (MQ=60)

                      ATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATG                                                                       <  SRR4302534.1900876/94‑1 (MQ=60)

                       TATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGCCATAGCCCGGCAATACAGCGAGCGGCAACCCGATGG                                                                      <  SRR4302534.2845867/94‑1 (MQ=60)

                        ATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGT                                                                     <  SRR4302534.4092365/94‑1 (MQ=60)

                         TTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTG                                                                    >  SRR4302534.5446212/1‑94 (MQ=60)

                         TTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTG                                                                    <  SRR4302534.1286016/94‑1 (MQ=60)

                          TGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGA                                                                   <  SRR4302534.3496866/94‑1 (MQ=60)

                           GCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAG                                                                  <  SRR4302534.1832019/94‑1 (MQ=60)

                            CAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGG                                                                 >  SRR4302534.4513941/1‑94 (MQ=60)

                            CAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGG                                                                 <  SRR4302534.4353141/94‑1 (MQ=60)

                             AGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGT                                                                >  SRR4302534.6000748/1‑94 (MQ=60)

                              GGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTA                                                               >  SRR4302534.2260435/1‑94 (MQ=60)

                               GCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAG                                                              <  SRR4302534.6623175/94‑1 (MQ=60)

                               GCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAG                                                              >  SRR4302534.3908090/1‑94 (MQ=60)

                                CTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGC                                                             <  SRR4302534.3261271/94‑1 (MQ=60)

                                 TGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCT                                                            <  SRR4302534.1377926/94‑1 (MQ=60)

                                 TGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCT                                                            <  SRR4302534.2647530/94‑1 (MQ=60)

                                     AACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCG                                                        >  SRR4302534.4400871/1‑94 (MQ=60)

                                     AACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCG                                                        >  SRR4302534.5950398/1‑94 (MQ=60)

                                        CAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAG                                                     >  SRR4302534.5883398/1‑94 (MQ=60)

                                        CAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAG                                                     >  SRR4302534.867184/1‑94 (MQ=60)

                                        CAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAG                                                     >  SRR4302534.3822687/1‑94 (MQ=60)

                                        CAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAG                                                     >  SRR4302534.2574142/1‑94 (MQ=60)

                                        CAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAG                                                     >  SRR4302534.2975658/1‑94 (MQ=60)

                                         AATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGT                                                    >  SRR4302534.5712668/1‑94 (MQ=60)

                                          ATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTT                                                   <  SRR4302534.2270377/94‑1 (MQ=60)

                                          ATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTT                                                   <  SRR4302534.2060309/94‑1 (MQ=60)

                                            CCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAA                                                 >  SRR4302534.3013048/1‑94 (MQ=60)

                                              TGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAAC                                               <  SRR4302534.2870471/94‑1 (MQ=60)

                                               GCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACA                                              >  SRR4302534.508910/1‑94 (MQ=60)

                                               GCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACA                                              <  SRR4302534.5916838/94‑1 (MQ=60)

                                               GCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACA                                              <  SRR4302534.3104296/94‑1 (MQ=60)

                                                CCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGACGTTAAACAT                                             <  SRR4302534.6433851/94‑1 (MQ=60)

                                                CCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACAT                                             >  SRR4302534.1263551/1‑94 (MQ=60)

                                                 CCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATG                                            <  SRR4302534.844080/94‑1 (MQ=60)

                                                 CCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATG                                            <  SRR4302534.1109939/94‑1 (MQ=60)

                                                 CCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATG                                            >  SRR4302534.3205312/1‑94 (MQ=60)

                                                  CAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGA                                           <  SRR4302534.728224/94‑1 (MQ=60)

                                                    GAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACT                                         <  SRR4302534.974652/94‑1 (MQ=60)

                                                     AAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTA                                        >  SRR4302534.1962701/1‑94 (MQ=60)

                                                       GGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATA                                      >  SRR4302534.5446668/1‑94 (MQ=60)

                                                       GGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATA                                      <  SRR4302534.6568886/94‑1 (MQ=60)

                                                        GCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAG                                     <  SRR4302534.2790738/94‑1 (MQ=60)

                                                        GCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAG                                     <  SRR4302534.1477615/94‑1 (MQ=60)

                                                         CGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGA                                    >  SRR4302534.316520/1‑94 (MQ=60)

                                                         CGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGA                                    >  SRR4302534.1287214/1‑94 (MQ=60)

                                                          GCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAG                                   >  SRR4302534.4102171/1‑94 (MQ=60)

                                                          GCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAG                                   >  SRR4302534.370722/1‑94 (MQ=60)

                                                           CTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGA                                  <  SRR4302534.4426969/94‑1 (MQ=60)

                                                           CTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGA                                  <  SRR4302534.54495/94‑1 (MQ=60)

                                                            TAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGAC                                 <  SRR4302534.3591609/94‑1 (MQ=60)

                                                            TAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGAC                                 >  SRR4302534.986333/1‑94 (MQ=60)

                                                            TAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGAC                                 >  SRR4302534.1479942/1‑94 (MQ=60)

                                                            TAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGAC                                 <  SRR4302534.4659223/94‑1 (MQ=60)

                                                             AAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACA                                >  SRR4302534.6330090/1‑94 (MQ=60)

                                                              AAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAA                               >  SRR4302534.3872511/1‑94 (MQ=60)

                                                               AGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAAT                              >  SRR4302534.5406590/1‑94 (MQ=60)

                                                               AGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAAT                              >  SRR4302534.1944812/1‑94 (MQ=60)

                                                                GCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATG                             <  SRR4302534.3895293/94‑1 (MQ=60)

                                                                 CCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGC                            <  SRR4302534.6539534/94‑1 (MQ=60)

                                                                 CCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGC                            >  SRR4302534.1667519/1‑94 (MQ=60)

                                                                 CCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGC                            <  SRR4302534.4145844/94‑1 (MQ=60)

                                                                  CCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCG                           <  SRR4302534.1870655/94‑1 (MQ=60)

                                                                     TCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAA                        <  SRR4302534.601600/94‑1 (MQ=60)

                                                                      CACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAA                       >  SRR4302534.887499/1‑94 (MQ=60)

                                                                       ACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAAT                      >  SRR4302534.5539142/1‑94 (MQ=60)

                                                                        CATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATT                     <  SRR4302534.6605261/94‑1 (MQ=60)

                                                                         ATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTC                    >  SRR4302534.1913878/1‑94 (MQ=60)

                                                                          TCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCA                   <  SRR4302534.6553427/94‑1 (MQ=60)

                                                                          TCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCA                   <  SRR4302534.640753/94‑1 (MQ=60)

                                                                           CATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAG                  >  SRR4302534.5322848/1‑94 (MQ=60)

                                                                           CATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAG                  >  SRR4302534.2463375/1‑94 (MQ=60)

                                                                            ATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGG                 <  SRR4302534.3223198/94‑1 (MQ=60)

                                                                              GGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGGCG               <  SRR4302534.5750250/94‑1 (MQ=60)

                                                                                TCATAGCCCGTCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGGCGCA             <  SRR4302534.3340386/94‑1 (MQ=60)

                                                                                ACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGGCGCA             >  SRR4302534.5240571/1‑94 (MQ=60)

                                                                                 CATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGGCGCAA            >  SRR4302534.1291930/1‑94 (MQ=60)

                                                                                  ATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGGCGCAAT           >  SRR4302534.3694937/1‑94 (MQ=60)

                                                                                   TAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGGCGCAATC          <  SRR4302534.4147370/94‑1 (MQ=60)

                                                                                    AGCCCGGCACTACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGGCGCAATCC         >  SRR4302534.6489427/1‑94 (MQ=60)

                                                                                    AGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGGCGCAATCC         >  SRR4302534.157068/1‑94 (MQ=60)

                                                                                    AGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGGCGCAATCC         >  SRR4302534.1298544/1‑94 (MQ=60)

                                                                                    AGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTAAGGCGCAATCC         >  SRR4302534.167213/1‑94 (MQ=60)

                                                                                      CCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGGCGCAATCCGT       <  SRR4302534.571568/94‑1 (MQ=60)

                                                                                       CCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGGCGCAATCCGTT      <  SRR4302534.5244184/94‑1 (MQ=60)

                                                                                       CCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGGCGCAATCCGTT      <  SRR4302534.2446246/94‑1 (MQ=60)

                                                                                       CCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGGCGCAATCCGTT      <  SRR4302534.1740137/94‑1 (MQ=60)

                                                                                        CGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGGCGCAATCCGTTT     <  SRR4302534.6523763/94‑1 (MQ=60)

                                                                                        CGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGGCGCAATCCGTTT     >  SRR4302534.219356/1‑94 (MQ=60)

                                                                                        CGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGGCGCAATCCGTTT     >  SRR4302534.2373124/1‑94 (MQ=60)

                                                                                          GCAATACAGCGACCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAAGTCAGGCGCAATCCGTTTAG   >  SRR4302534.2074309/1‑94 (MQ=60)

                                                                                           CAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGGCGCAATCCGTTTAGC  >  SRR4302534.4536215/1‑94 (MQ=60)

GGCGGCTCAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGTAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGGCGCAATCCGTTTAGC  >  NC_000913/3609154‑3609338

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`