Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,610,686 |
A→G |
P29P (CCA→CCG) |
yhhU → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,610,686 | 0 | A | G | 100.0%
| 915.6
/ NA
| 265 | P29P (CCA→CCG) | yhhU | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (134/131); total (134/131) |
Only 100 of 275 total aligned reads displayed.
TGATATGTATCGGATAGTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCACCGGGTTTACGCGAGCAAGCACCGCAAGGTCCACGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCAAACC > NC_000913/3610596‑3610775
|
tGATATGTATCGGATAGTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCcgcg > 1:5302352/1‑93 (MQ=255)
tatGTATCGGATAGTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCgcgacg < 1:1575713/93‑1 (MQ=255)
atGTATCGGATAGTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGAcgc > 2:2572850/1‑93 (MQ=255)
tCGGATAGTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACg > 1:1368312/1‑93 (MQ=255)
tCGGATAGTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACg > 2:3805823/1‑93 (MQ=255)
cGGATAGTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACgc > 1:3649940/1‑93 (MQ=255)
cGGATAGTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACgc < 1:5918723/93‑1 (MQ=255)
gATAGTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACgctg < 2:1754252/93‑1 (MQ=255)
gATAGTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACgctg > 2:5314884/1‑93 (MQ=255)
tAGTTCTGGGGAAAGTTTCGACCTTAAGCTCAGCTCCACTCCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACgctggc < 1:2437869/93‑1 (MQ=255)
tAGTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACgctggc < 2:3347311/93‑1 (MQ=255)
tAGTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACgctggc > 2:2273489/1‑93 (MQ=255)
aGTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACgctggct < 2:5009786/93‑1 (MQ=255)
gTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGCTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACgctggctg > 2:1030585/1‑93 (MQ=255)
ttCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGctggctgg < 1:1987247/93‑1 (MQ=255)
tCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCtggctggc < 2:4113664/93‑1 (MQ=255)
tCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCtggctggc < 2:1328552/93‑1 (MQ=255)
tCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCtggctggc < 2:86212/93‑1 (MQ=255)
cTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCg < 1:5006161/93‑1 (MQ=255)
tGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCgg < 2:3215532/93‑1 (MQ=255)
tGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCgg < 1:2539746/93‑1 (MQ=255)
ggggAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCggg > 1:6031007/1‑93 (MQ=255)
ggggAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCggg < 1:120429/93‑1 (MQ=255)
gggAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCgggg > 1:670191/1‑93 (MQ=255)
ggAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCggggg > 1:4753701/1‑92 (MQ=255)
ggAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGc < 2:4417762/93‑1 (MQ=255)
ggAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGc > 2:160169/1‑93 (MQ=255)
gAAAGTTTCGACCTTAAGCGCAGCTCCACTCCCGCCGGGTTTACGCGAGCACGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCg < 1:4216565/93‑1 (MQ=255)
aaaCTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGt < 2:1679871/93‑1 (MQ=255)
aaGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTg < 2:1444638/93‑1 (MQ=255)
aaGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTg > 1:3671043/1‑93 (MQ=255)
aaGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGCCTGGCGGGGGGTg > 2:4253942/1‑93 (MQ=255)
aGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTACGCGACGCGAACGCTGGCTGGCGGGGCGTGc > 2:2050798/1‑93 (MQ=255)
tCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTg > 1:5538628/1‑93 (MQ=255)
ggccTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGGGCATTGCt > 1:6177551/3‑93 (MQ=255)
gACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCt < 2:5069894/93‑1 (MQ=255)
gACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGCGCGGGCATTGCt > 2:1922932/1‑93 (MQ=255)
ccTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCttt > 1:4297529/1‑93 (MQ=255)
ccTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCttt > 1:124388/1‑93 (MQ=255)
cTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTc < 1:5426217/93‑1 (MQ=255)
tAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGc > 2:362365/1‑93 (MQ=255)
tAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGc < 2:1861067/93‑1 (MQ=255)
aaGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGca < 1:941833/93‑1 (MQ=255)
aGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCCTTTCTTTCGccc > 2:58840/1‑91 (MQ=255)
aGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGcac > 2:5169064/1‑93 (MQ=255)
gcgcAGCTCCCCTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGcaca < 2:6266792/93‑1 (MQ=255)
gcAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGGATTGCTTTCCCacacc > 1:2359123/1‑92 (MQ=255)
cAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGc < 2:4215243/93‑1 (MQ=255)
aGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCCCACGCt > 1:4714453/1‑93 (MQ=255)
aGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCt < 1:3148770/93‑1 (MQ=255)
gCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCtt < 2:4071027/93‑1 (MQ=255)
tCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTc < 2:3650896/93‑1 (MQ=255)
ccACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTcc < 2:3864705/93‑1 (MQ=255)
ccACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTcc < 2:3397721/93‑1 (MQ=255)
ccACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTcc > 1:3434244/1‑93 (MQ=255)
cACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTccc < 2:2127023/93‑1 (MQ=255)
tGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGc > 2:3290127/1‑93 (MQ=255)
gccgccGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCt > 1:2786131/1‑93 (MQ=255)
gccgccGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCt > 2:6355938/1‑93 (MQ=255)
ccgccGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTa < 1:2981289/90‑1 (MQ=255)
gccGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGATCGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCCTTCCCCGCTAcc > 2:4534325/2‑93 (MQ=255)
ccGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCg > 1:4848236/1‑93 (MQ=255)
gggTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGga < 2:4918231/93‑1 (MQ=255)
gggTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGga > 1:1095495/1‑93 (MQ=255)
gggTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGga > 1:582031/1‑93 (MQ=255)
ggTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGgag > 2:4816477/1‑93 (MQ=255)
gTTTACGCGGGCAAGCAACGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTTATTTCGTACACGCTTTCCCCGCTACCTgagg > 1:3090337/1‑92 (MQ=255)
gTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCCgaga > 2:3757896/1‑93 (MQ=255)
tttACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGat > 2:3922452/1‑93 (MQ=255)
gttACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGat < 2:694975/92‑1 (MQ=255)
ttACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGatc < 2:4362367/93‑1 (MQ=255)
aCGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGatcat > 2:5591385/1‑93 (MQ=255)
cgcgAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGatcatc < 1:4139870/93‑1 (MQ=255)
gcgAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTTGCACACGCCTTTCCCGCTTCCCGAGATCATCt > 1:1117008/1‑93 (MQ=255)
gcgAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCt < 1:4429843/93‑1 (MQ=255)
gcgAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCt < 2:2523221/93‑1 (MQ=255)
cgAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTa < 2:2189172/93‑1 (MQ=255)
cgAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTa > 2:3568175/1‑93 (MQ=255)
gAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTAt > 2:3167763/1‑93 (MQ=255)
gcaagcaCCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATgg < 1:5353776/93‑1 (MQ=255)
caagcaCCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGc < 1:2103817/93‑1 (MQ=255)
caagcaCCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGc < 1:1696329/93‑1 (MQ=255)
agcaCCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGa > 2:3502380/1‑93 (MQ=255)
gcaCCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGaa > 2:3074473/1‑93 (MQ=255)
caCCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAAc < 1:75022/93‑1 (MQ=255)
aCCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACa < 1:3327397/93‑1 (MQ=255)
gCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAgg > 2:1222264/1‑93 (MQ=255)
gCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAgg < 2:592860/93‑1 (MQ=255)
gCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAgg < 2:5984201/93‑1 (MQ=255)
cAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGc < 2:1125557/93‑1 (MQ=255)
cAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGc < 2:5756693/93‑1 (MQ=255)
aaGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCa > 1:2301541/1‑93 (MQ=255)
aaGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCa > 2:638176/1‑93 (MQ=255)
aaGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCa < 2:294285/93‑1 (MQ=255)
aGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCaa > 2:2163930/1‑93 (MQ=255)
aGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCaa < 2:561220/93‑1 (MQ=255)
ggTCCGCGACGCGATCGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCaaa < 2:2094012/93‑1 (MQ=255)
gTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCAAAc > 1:3956622/1‑93 (MQ=255)
tCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCAAAcc < 1:5858162/93‑1 (MQ=255)
tCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCAAAcc < 1:1461129/93‑1 (MQ=255)
|
TGATATGTATCGGATAGTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCACCGGGTTTACGCGAGCAAGCACCGCAAGGTCCACGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCAAACC > NC_000913/3610596‑3610775
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCCTGATATGTATCGGATAGTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCACCGGGTTTACGCGAGCAAGCACCGCAAGGTCCACGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCAAACCTGCA > NC_000913/3610593‑3610779
|
CCCTGATATGTATCGGATAGTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCG < SRR4302534.3899096/94‑1 (MQ=60)
CCCTGATATGTATCGGATAGTTCTGGGGAAAGATTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCG > SRR4302534.5834660/1‑94 (MQ=60)
CCTGATATGTATCGGATAGTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGC > SRR4302534.1990382/1‑94 (MQ=60)
CCTGATATGTATCGGATAGTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGC < SRR4302534.3378410/94‑1 (MQ=60)
CTGATATGTATCGGATAGTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCG > SRR4302534.5445426/1‑94 (MQ=60)
CTGATATGTATCGGATAGTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCG > SRR4302534.4879059/1‑94 (MQ=60)
ATATGTATCGGATAGTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACG > SRR4302534.6184073/1‑94 (MQ=60)
TATGTATCGGATAGTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGC < SRR4302534.1616943/94‑1 (MQ=60)
GTATCGGATAGTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAA < SRR4302534.3110968/94‑1 (MQ=60)
TATCGGATAGTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAAC > SRR4302534.4571490/1‑94 (MQ=60)
ATCGGATAGTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACG > SRR4302534.1404358/1‑94 (MQ=60)
TCGGATAGTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGC > SRR4302534.3748029/1‑94 (MQ=60)
CGGATAGTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCT < SRR4302534.3070043/94‑1 (MQ=60)
CGGATAGTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCT < SRR4302534.6079431/94‑1 (MQ=60)
CGGATAGTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCT < SRR4302534.4221165/94‑1 (MQ=60)
GGATAGTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTG > SRR4302534.4778021/1‑94 (MQ=60)
GGATAGTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTG > SRR4302534.5858898/1‑94 (MQ=60)
GGATAGTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTG > SRR4302534.1608567/1‑94 (MQ=60)
GATAGTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGG < SRR4302534.2632000/94‑1 (MQ=60)
TAGTTCTGGGGAAAGTTTCGACCTTAAGCTCAGCTCCACTCCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCT < SRR4302534.2502661/94‑1 (MQ=60)
TAGTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCT < SRR4302534.1364020/94‑1 (MQ=60)
TAGTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCT > SRR4302534.3315357/1‑94 (MQ=60)
AGTGCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGACCGCGACGCGAACGCTGGCTG < SRR4302534.6263212/94‑1 (MQ=60)
GTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGG > SRR4302534.2427196/1‑94 (MQ=60)
TTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGC < SRR4302534.2039287/94‑1 (MQ=60)
TCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCG > SRR4302534.5824532/1‑94 (MQ=60)
CTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGG > SRR4302534.3426591/1‑94 (MQ=60)
CTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGG < SRR4302534.5141473/94‑1 (MQ=60)
ttggtaaagtgtcgccctaAAGCGCAGCTCCACTGCCGCCTGGTTTACGCGAGCAAGCGCCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGG < SRR4302534.3283486/75‑1 (MQ=60)
TGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGG < SRR4302534.2607133/94‑1 (MQ=60)
TGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGG < SRR4302534.6048658/94‑1 (MQ=60)
TGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGG > SRR4302534.6194892/1‑94 (MQ=60)
GGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGG < SRR4302534.123620/94‑1 (MQ=60)
GGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGG > SRR4302534.686522/1‑94 (MQ=60)
GGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGG > SRR4302534.4882752/1‑94 (MQ=60)
GGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGC > SRR4302534.3212391/1‑94 (MQ=60)
ggaaatgatgtACCTTCAGCGCAGCGCCACTTCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCG < SRR4302534.5103112/83‑1 (MQ=60)
GGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCG > SRR4302534.2764511/1‑94 (MQ=60)
aaaatTTTCGACCTAAAGCGCAGCCCCACTGCCGCCGGTTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCaaacccggcggcagt < SRR4302534.197570/89‑16 (MQ=60)
GAAAGTTTCGACCTTAAGCGCAGCTCCACTCCCGCCGGGTTTACGCGAGCACGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGT < SRR4302534.4330282/94‑1 (MQ=60)
AAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTG > SRR4302534.3769736/1‑94 (MQ=60)
AAAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTG < SRR4302534.1017257/94‑1 (MQ=60)
AAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGC > SRR4302534.2950972/1‑94 (MQ=60)
AAGTTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGCGC > SRR4302534.4045771/1‑94 (MQ=60)
TTTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATT < SRR4302534.4259985/94‑1 (MQ=60)
TTTCGACCTTAAGCGCAGCCCCACTGCCGCCGGGTCTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGACCGCTGGCTGGCTGAGCGTGCATT < SRR4302534.3283638/94‑1 (MQ=60)
TTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTG > SRR4302534.4932288/1‑94 (MQ=60)
TTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTG > SRR4302534.4882205/1‑94 (MQ=60)
TTCGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTG > SRR4302534.5688134/1‑94 (MQ=60)
CGGCCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGGGCATTGCT > SRR4302534.6345659/1‑94 (MQ=60)
CGACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGGGTGCCTTGCT > SRR4302534.1379100/1‑94 (MQ=60)
GACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGgct > SRR4302534.5173879/1‑91 (MQ=60)
ACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTT > SRR4302534.127674/1‑94 (MQ=60)
ACCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTT > SRR4302534.4413978/1‑94 (MQ=60)
CCTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCCTTGCTTTC > SRR4302534.683957/1‑94 (MQ=60)
CTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCG < SRR4302534.5572256/94‑1 (MQ=60)
CTTAAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCG > SRR4302534.6285101/1‑94 (MQ=60)
AAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCAC > SRR4302534.547581/1‑94 (MQ=60)
AAGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCAC < SRR4302534.965788/94‑1 (MQ=60)
AGCGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACA < SRR4302534.1008494/94‑1 (MQ=60)
CGCAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGGATTGCTTTCCCACACC > SRR4302534.2421747/1‑94 (MQ=60)
CAGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCCCACGCT > SRR4302534.4842481/1‑94 (MQ=60)
AGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTT < SRR4302534.3231613/94‑1 (MQ=60)
AGCTCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTT < SRR4302534.4419279/94‑1 (MQ=60)
TCCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCC > SRR4302534.3526520/1‑94 (MQ=60)
CCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCC > SRR4302534.5003050/1‑94 (MQ=60)
CCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCC > SRR4302534.377998/1‑94 (MQ=60)
CCACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCC < SRR4302534.368296/94‑1 (MQ=60)
CACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGATGCGAACGCTGGCTGGCGCGGCGTagcttgctttgccaggcggattgccc > SRR4302534.1825181/1‑68 (MQ=60)
CACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCC < SRR4302534.1933643/94‑1 (MQ=60)
ACTGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCG < SRR4302534.5387528/94‑1 (MQ=60)
TGCCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCT > SRR4302534.2859410/1‑94 (MQ=60)
GCCGCTGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTA < SRR4302534.202027/94‑1 (MQ=60)
CCGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTAC < SRR4302534.3059302/94‑1 (MQ=60)
CGCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGGGTGCATTGCTTTCGCACACGCTTTCCCCGCTACC > SRR4302534.224807/1‑94 (MQ=60)
CGCCGGGTGTACGCGAGCAAGCACCGCAAGGTCGGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACC < SRR4302534.4984882/94‑1 (MQ=60)
gcggaGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCG < SRR4302534.1249204/89‑1 (MQ=60)
GCCGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCG > SRR4302534.4979765/1‑94 (MQ=60)
CGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGA > SRR4302534.1123995/1‑94 (MQ=60)
CGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGA > SRR4302534.596277/1‑94 (MQ=60)
CGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGA > SRR4302534.1235381/1‑94 (MQ=60)
CGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCCGA > SRR4302534.5644296/1‑94 (MQ=60)
CGGGTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGGGCATTGCTTTCGCACACGATTTCCCCGCTACCGGG > SRR4302534.4415911/1‑94 (MQ=60)
GGTTTACGCGGGCAAGCAACGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTTATTTCGTACACGCTTTCCCCGCTACCtgagg > SRR4302534.3171595/1‑89 (MQ=60)
GTTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGAT < SRR4302534.2402585/94‑1 (MQ=60)
TTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATC < SRR4302534.5678107/94‑1 (MQ=60)
TTTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATC < SRR4302534.6636332/94‑1 (MQ=60)
TTACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCACCGCTACCGGAGATCA > SRR4302534.3760338/1‑94 (MQ=60)
ACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATC > SRR4302534.6184751/1‑94 (MQ=60)
ACGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATC > SRR4302534.1128596/1‑94 (MQ=60)
CGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTTGCACACGCCTTTCCCGCTTCCCGAGATCATCT > SRR4302534.1146178/1‑94 (MQ=60)
CGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCT < SRR4302534.1237352/94‑1 (MQ=60)
CGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCT < SRR4302534.4251589/94‑1 (MQ=60)
CGCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTACCCGCTACCGGAGATCATCT > SRR4302534.1729512/1‑94 (MQ=60)
GCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTA < SRR4302534.4549451/94‑1 (MQ=60)
GCGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTA < SRR4302534.942024/94‑1 (MQ=60)
CGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTAT > SRR4302534.3307111/1‑94 (MQ=60)
CGAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTAT < SRR4302534.4299690/94‑1 (MQ=60)
GAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATG < SRR4302534.870074/94‑1 (MQ=60)
GAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATG > SRR4302534.744134/1‑94 (MQ=60)
GAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATG > SRR4302534.2515943/1‑94 (MQ=60)
GAGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATG < SRR4302534.1703929/94‑1 (MQ=60)
AGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATTG > SRR4302534.1467765/1‑94 (MQ=60)
AGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGG < SRR4302534.4084260/94‑1 (MQ=60)
AGCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGG < SRR4302534.2080565/94‑1 (MQ=60)
GCAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGC < SRR4302534.5498110/94‑1 (MQ=60)
CAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCG < SRR4302534.2159053/94‑1 (MQ=60)
CAAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCG < SRR4302534.1740415/94‑1 (MQ=60)
AAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTTCCCGCTACCGGAGATCATCTATTGCGA > SRR4302534.2367006/1‑94 (MQ=60)
AAGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGA < SRR4302534.6003044/94‑1 (MQ=60)
AGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGGGGGGGGTGCATTGCTTTCGCACACGCTTTTCCCGCTACCGGAGATCATCTATGGCGCA > SRR4302534.1615924/1‑94 (MQ=60)
AGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAA > SRR4302534.1839225/1‑94 (MQ=60)
AGCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAA < SRR4302534.2175316/94‑1 (MQ=60)
GCACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAAC < SRR4302534.5987473/94‑1 (MQ=60)
CACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACA < SRR4302534.77054/94‑1 (MQ=60)
CACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACA > SRR4302534.4382698/1‑94 (MQ=60)
ACCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAA < SRR4302534.3416383/94‑1 (MQ=60)
CCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAG < SRR4302534.3478761/94‑1 (MQ=60)
CCGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAG < SRR4302534.2475058/94‑1 (MQ=60)
CGCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGG > SRR4302534.370445/1‑94 (MQ=60)
CACAAGTTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGG < SRR4302534.552353/94‑1 (MQ=60)
GCAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGA > SRR4302534.3031408/1‑94 (MQ=60)
CAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCA < SRR4302534.1233766/94‑1 (MQ=60)
CAAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCA > SRR4302534.2362629/1‑94 (MQ=60)
AAGGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCAA > SRR4302534.1555994/1‑94 (MQ=60)
GGTCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCAAAC > SRR4302534.4062568/1‑94 (MQ=60)
TCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCAAACCT < SRR4302534.127274/94‑1 (MQ=60)
TCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCAAACCT < SRR4302534.54894/94‑1 (MQ=60)
TCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCAAACCT < SRR4302534.6017222/94‑1 (MQ=60)
TCCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCAAACCT < SRR4302534.1499551/94‑1 (MQ=60)
CCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCAAACCTG < SRR4302534.2176195/94‑1 (MQ=60)
CCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCAAACCTG < SRR4302534.5393398/94‑1 (MQ=60)
CCGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCAAACCTG < SRR4302534.4542441/94‑1 (MQ=60)
CGCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCAAACCTGC > SRR4302534.6627565/1‑94 (MQ=60)
GCGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCCGAGATCATCTATGGCGAACAAGGCAAACCTGCA > SRR4302534.2286625/1‑94 (MQ=60)
|
CCCTGATATGTATCGGATAGTTCTGGGGAAAGTTTCGACCTTAAGCGCAGCTCCACTGCCACCGGGTTTACGCGAGCAAGCACCGCAAGGTCCACGACGCGAACGCTGGCTGGCGGGGCGTGCATTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCAAACCTGCA > NC_000913/3610593‑3610779
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
