Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,682,619	A→G	R199R (CGT→CGC)	yhjK ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,682,619	0	A	G	100.0%	942.5 / NA	272	R199R (CGT→CGC)	yhjK	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (124/148); total (124/148)

Only 100 of 278 total aligned reads displayed.

TTCGTTCTGTTCTTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGACGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAACGGATGCAAAATCA  >  NC_000913/3682529‑3682707

ttCGTTCTGTTCTTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGcg                                                                                        >  1:6422605/1‑93 (MQ=255)

  cGTTCTGTTCTTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGcgcg                                                                                      <  1:5490703/93‑1 (MQ=255)

    ttctgttctTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGt                                                                                    >  1:2259276/1‑93 (MQ=255)

      ctgttctTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTaa                                                                                  <  2:4639646/93‑1 (MQ=255)

       tgttctTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAAt                                                                                 <  2:5761420/93‑1 (MQ=255)

       tgttctTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAAt                                                                                 >  1:312315/1‑93 (MQ=255)

       tgttctTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAAt                                                                                 >  1:2325627/1‑93 (MQ=255)

         ttcttcATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGc                                                                               >  1:2916383/1‑93 (MQ=255)

          tcttcATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGcc                                                                              <  1:5175368/93‑1 (MQ=255)

          tcttcATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGcc                                                                              <  2:6178246/93‑1 (MQ=255)

            ttcATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAg                                                                            >  2:5226225/1‑93 (MQ=255)

              cATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGtt                                                                          <  2:1602948/93‑1 (MQ=255)

               aTAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTg                                                                         >  2:2639254/1‑93 (MQ=255)

               aTAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTg                                                                         <  1:845243/93‑1 (MQ=255)

                tAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTgg                                                                        >  1:1343238/1‑93 (MQ=255)

                tAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTgg                                                                        >  1:4622119/1‑93 (MQ=255)

                tAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTgg                                                                        >  1:3935741/1‑93 (MQ=255)

                 aaTGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGt                                                                       >  2:60514/1‑93 (MQ=255)

                  aTGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTg                                                                      >  1:3868061/1‑93 (MQ=255)

                  aTGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTg                                                                      <  1:4830669/93‑1 (MQ=255)

                  aTGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTg                                                                      <  1:1823656/93‑1 (MQ=255)

                   tGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGa                                                                     <  2:3698676/93‑1 (MQ=255)

                   tGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGa                                                                     >  2:668/1‑93 (MQ=255)

                     gcgcTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGAcc                                                                   >  2:2937940/1‑93 (MQ=255)

                      cgcTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACca                                                                  <  2:5931511/93‑1 (MQ=255)

                       gcTGCAGCAATTGCTGGTTGAGGTTGTCACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGACAGTTGGTGACcaa                                                                 >  1:3712951/1‑93 (MQ=255)

                        cTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACcaac                                                                <  2:5855768/93‑1 (MQ=255)

                          gcagcaATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACcaacaa                                                              <  2:384455/93‑1 (MQ=255)

                          gcagcaATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACcaacaa                                                              <  1:4802187/93‑1 (MQ=255)

                          gcagcaATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACcaacaa                                                              <  1:2602372/93‑1 (MQ=255)

                           cagcaATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAg                                                             >  1:3287411/1‑93 (MQ=255)

                            agcaATTGCTGGTTGAGGTTGTAACTGCGGACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGc                                                            <  2:4975628/93‑1 (MQ=255)

                             gcaATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCt                                                           <  2:4407773/93‑1 (MQ=255)

                               aaTTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTcc                                                         >  1:200339/1‑93 (MQ=255)

                               aaTTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTcc                                                         >  1:3636688/1‑93 (MQ=255)

                                aTTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCt                                                        <  2:5108417/93‑1 (MQ=255)

                                aTTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCt                                                        >  2:3560696/1‑93 (MQ=255)

                                aTTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCt                                                        <  1:6131040/93‑1 (MQ=255)

                                 ttGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCtt                                                       <  1:2714929/93‑1 (MQ=255)

                                  tGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTg                                                      <  2:3743469/93‑1 (MQ=255)

                                  tGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTg                                                      >  1:60143/1‑93 (MQ=255)

                                  tGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTg                                                      <  2:4355312/93‑1 (MQ=255)

                                    cTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGc                                                    <  1:5567333/93‑1 (MQ=255)

                                      ggTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTg                                                  <  1:5678648/93‑1 (MQ=255)

                                       gTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTgg                                                 <  2:4386447/93‑1 (MQ=255)

                                       gTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTgg                                                 >  1:2449629/1‑93 (MQ=255)

                                        ttGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTggg                                                <  2:443355/93‑1 (MQ=255)

                                         tGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGa                                               >  2:5159763/1‑93 (MQ=255)

                                          gAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGAt                                              >  2:1862465/1‑93 (MQ=255)

                                          gAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGAt                                              <  2:3802034/93‑1 (MQ=255)

                                           aGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATg                                             <  1:6343385/93‑1 (MQ=255)

                                           aGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATg                                             <  2:409933/93‑1 (MQ=255)

                                           aGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATg                                             >  1:1064730/1‑93 (MQ=255)

                                            ggTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGTTGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATgg                                            <  1:4930534/93‑1 (MQ=255)

                                            ggTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATgg                                            <  2:4731781/93‑1 (MQ=255)

                                            ggTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATgg                                            <  2:1562626/93‑1 (MQ=255)

                                             gTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGc                                           >  2:6255794/1‑93 (MQ=255)

                                             gTTGTAACTGCCCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGGTGGc                                           >  1:4405075/1‑93 (MQ=255)

                                                gTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGtt                                        <  2:590321/93‑1 (MQ=255)

                                                  aaCTGCGCACCGACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTaa                                      >  1:1257753/1‑93 (MQ=255)

                                                  aaCTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTaa                                      >  1:4198983/1‑93 (MQ=255)

                                                   aCTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAg                                     >  2:3163811/1‑93 (MQ=255)

                                                   aCTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAg                                     <  2:5460544/93‑1 (MQ=255)

                                                    cTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGt                                    <  2:2004424/93‑1 (MQ=255)

                                                    cTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGt                                    <  1:2507530/93‑1 (MQ=255)

                                                    cTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGt                                    >  2:1793066/1‑93 (MQ=255)

                                                    cTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGt                                    <  1:5199822/93‑1 (MQ=255)

                                                     tGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGtt                                   <  1:43501/93‑1 (MQ=255)

                                                     tGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGtt                                   <  2:5692272/93‑1 (MQ=255)

                                                     tGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGtt                                   <  2:4869303/93‑1 (MQ=255)

                                                      gcgcACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTc                                  <  1:4122173/93‑1 (MQ=255)

                                                      gcgcACCAACATACCGATTTAATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTc                                  <  2:6437293/93‑1 (MQ=255)

                                                       cgcACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTcg                                 >  2:4259576/1‑93 (MQ=255)

                                                       cgcACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTcg                                 <  1:995701/93‑1 (MQ=255)

                                                        gcACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTcgc                                >  2:5549278/1‑93 (MQ=255)

                                                        gcACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTcgc                                >  1:4241752/1‑93 (MQ=255)

                                                         cACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTcgcg                               >  2:1341753/1‑93 (MQ=255)

                                                          aCCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTcgcgc                              >  2:3283073/1‑92 (MQ=255)

                                                           ccAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAg                             <  1:2198247/93‑1 (MQ=255)

                                                              aCATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGcca                          <  1:5116401/93‑3 (MQ=255)

                                                                 tACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAatat                       <  1:4660552/93‑1 (MQ=255)

                                                                  aCCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATAtt                      >  1:5845403/1‑93 (MQ=255)

                                                                  aCCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATAtt                      <  1:1662850/93‑1 (MQ=255)

                                                                  aCCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATAtt                      <  1:3554880/93‑1 (MQ=255)

                                                                     gATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCg                   <  1:2245201/93‑1 (MQ=255)

                                                                      aTTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGt                  >  1:4867385/1‑93 (MQ=255)

                                                                      aTTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGt                  <  1:2866681/93‑1 (MQ=255)

                                                                      aTTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGt                  >  1:5862330/1‑93 (MQ=255)

                                                                         tCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAAc               >  2:4214904/1‑93 (MQ=255)

                                                                         tCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAAc               <  1:5954880/93‑1 (MQ=255)

                                                                          cATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAACg              <  2:1249840/93‑1 (MQ=255)

                                                                          cATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAACg              <  2:6297396/93‑1 (MQ=255)

                                                                           aTCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAACgg             <  1:3736867/93‑1 (MQ=255)

                                                                           aTCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAACgg             >  1:4026238/1‑93 (MQ=255)

                                                                           aTCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAACgg             <  1:1540901/93‑1 (MQ=255)

                                                                              gTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAACGGATg          >  2:811424/1‑93 (MQ=255)

                                                                              gTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAACGGATg          <  2:2208148/93‑1 (MQ=255)

                                                                                 cTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAACGGATGCaa       >  2:2381338/1‑93 (MQ=255)

                                                                                  tGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAACGGATGCaaa      <  1:3392939/93‑1 (MQ=255)

                                                                                      gCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAACGGATGCAAAATCa  <  1:3233538/93‑1 (MQ=255)

TTCGTTCTGTTCTTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGACGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAACGGATGCAAAATCA  >  NC_000913/3682529‑3682707

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATTTTCGTTCTGTTCTTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGACGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAACGGATGCAAAATCAGGC  >  NC_000913/3682526‑3682710

ATTTTCGTTCTGTTCTTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGG                                                                                             >  SRR4302534.2105045/1‑94 (MQ=60)

ATTTTCGTTCTGTTCTTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGG                                                                                             <  SRR4302534.5306847/94‑1 (MQ=60)

ATTTTCGTTCTGTTCTTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGG                                                                                             >  SRR4302534.1591808/1‑94 (MQ=60)

ATTTTCGTTCTGTTCTTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGG                                                                                             <  SRR4302534.5622732/94‑1 (MQ=60)

ATTTTCGTTCTGTTCTTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGG                                                                                             <  SRR4302534.5648162/94‑1 (MQ=60)

  TTTCGTTCTGTTCTTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCG                                                                                           >  SRR4302534.6595825/1‑94 (MQ=60)

  TTTCGTTCTGTTCTTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCG                                                                                           >  SRR4302534.4989098/1‑94 (MQ=60)

   TTCGTTCTGTTCTTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGC                                                                                          <  SRR4302534.2609707/94‑1 (MQ=60)

   TTCGTTCTGTTCTTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGC                                                                                          >  SRR4302534.4442874/1‑94 (MQ=60)

    TCGTTCTGTTGTTCATAATTGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTGCTGATGCAGGCGCG                                                                                         >  SRR4302534.3878661/1‑94 (MQ=60)

     CGTTCTGTTCTTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGG                                                                                        <  SRR4302534.5638772/94‑1 (MQ=60)

     CGTTCTGTTCTTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGG                                                                                        >  SRR4302534.2227316/1‑94 (MQ=60)

     CGTTCTGTTCTTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGG                                                                                        >  SRR4302534.2816446/1‑94 (MQ=60)

     CGTTCTGTTCTTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGG                                                                                        >  SRR4302534.810978/1‑94 (MQ=60)

     CGTTCTGTTCTTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGG                                                                                        >  SRR4302534.231582/1‑94 (MQ=60)

      GTTCTGTTCTTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGT                                                                                       >  SRR4302534.1262334/1‑94 (MQ=60)

      GTTCTGTTCTTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGT                                                                                       >  SRR4302534.2319173/1‑94 (MQ=60)

      GTTCTGTTCTTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGT                                                                                       >  SRR4302534.2319172/1‑94 (MQ=60)

       TTCTGTTCTTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTA                                                                                      <  SRR4302534.2302140/94‑1 (MQ=60)

       TTCTGTTCTTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTA                                                                                      >  SRR4302534.3533403/1‑94 (MQ=60)

         CTGTTCTTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAAT                                                                                    >  SRR4302534.320366/1‑94 (MQ=60)

         CTGTTCTTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAAT                                                                                    >  SRR4302534.6254608/1‑94 (MQ=60)

         CTGTTCTTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAAT                                                                                    <  SRR4302534.2965316/94‑1 (MQ=60)

         CTGTTCTTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAAT                                                                                    >  SRR4302534.2387336/1‑94 (MQ=60)

          TGTTCTTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATG                                                                                   >  SRR4302534.1635007/1‑94 (MQ=60)

          TGTTCTTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATG                                                                                   >  SRR4302534.5693541/1‑94 (MQ=60)

           GTTCTTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGC                                                                                  >  SRR4302534.5279616/1‑94 (MQ=60)

           GTTCTTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGC                                                                                  >  SRR4302534.2992918/1‑94 (MQ=60)

             TCTTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCA                                                                                >  SRR4302534.3723483/1‑94 (MQ=60)

             TCTTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCA                                                                                <  SRR4302534.5314828/94‑1 (MQ=60)

              CTTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAG                                                                               >  SRR4302534.2290076/1‑94 (MQ=60)

              CTTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAG                                                                               >  SRR4302534.6481093/1‑94 (MQ=60)

               TTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGT                                                                              >  SRR4302534.3719790/1‑94 (MQ=60)

                TCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTT                                                                             >  SRR4302534.5833929/1‑94 (MQ=60)

                TCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTT                                                                             <  SRR4302534.6173305/94‑1 (MQ=60)

                  ATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGG                                                                           >  SRR4302534.4747538/1‑94 (MQ=60)

                  ATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGG                                                                           <  SRR4302534.866543/94‑1 (MQ=60)

                  ATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGG                                                                           >  SRR4302534.1378657/1‑94 (MQ=60)

                  ATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGG                                                                           >  SRR4302534.4041164/1‑94 (MQ=60)

                   TAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGT                                                                          >  SRR4302534.4339068/1‑94 (MQ=60)

                   TAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGT                                                                          >  SRR4302534.5725749/1‑94 (MQ=60)

                   TAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGT                                                                          <  SRR4302534.819958/94‑1 (MQ=60)

                    AATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTG                                                                         <  SRR4302534.5336581/94‑1 (MQ=60)

                    AATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTG                                                                         <  SRR4302534.454060/94‑1 (MQ=60)

                    AATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTG                                                                         >  SRR4302534.3971914/1‑94 (MQ=60)

                    AATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTG                                                                         >  SRR4302534.3836556/1‑94 (MQ=60)

                    AATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTG                                                                         >  SRR4302534.3128733/1‑94 (MQ=60)

                     ATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGA                                                                        >  SRR4302534.2524981/1‑94 (MQ=60)

                     ATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGA                                                                        <  SRR4302534.4961732/94‑1 (MQ=60)

                     ATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGA                                                                        >  SRR4302534.4485821/1‑94 (MQ=60)

                     ATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGA                                                                        <  SRR4302534.1871070/94‑1 (MQ=60)

                       GGCGCGGCCGCAATTGCTGGGTGAGGTTGCAACTGCGCACCAACATACCGATTGCATCGTCCCGATGTAGGCGAGGTAATGCCAGTTGGTAACC                                                                      <  SRR4302534.2909835/94‑1 (MQ=46)

                        GCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCA                                                                     <  SRR4302534.2177460/94‑1 (MQ=60)

                        GCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCA                                                                     <  SRR4302534.6529834/94‑1 (MQ=60)

                        GCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCA                                                                     <  SRR4302534.1940459/94‑1 (MQ=60)

                         CGCTGCAGCAATTGCTGGTTGAGGTTGTCACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGACAGTTGGTGACCAA                                                                    >  SRR4302534.3812785/1‑94 (MQ=60)

                         CGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAA                                                                    >  SRR4302534.3812786/1‑94 (MQ=60)

                         CGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAA                                                                    >  SRR4302534.4216017/1‑94 (MQ=60)

                          GCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAAC                                                                   <  SRR4302534.5630070/94‑1 (MQ=60)

                          GCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAAC                                                                   >  SRR4302534.2485205/1‑94 (MQ=60)

                             GCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAG                                                                >  SRR4302534.3375068/1‑94 (MQ=60)

                             GCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAG                                                                <  SRR4302534.2671208/94‑1 (MQ=60)

                             GCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAG                                                                <  SRR4302534.478950/94‑1 (MQ=60)

                             GCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAG                                                                <  SRR4302534.4932583/94‑1 (MQ=60)

                              CAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGC                                                               <  SRR4302534.5755307/94‑1 (MQ=60)

                               AGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCT                                                              <  SRR4302534.6192136/94‑1 (MQ=60)

                                GCAATTGCTGGTGGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTC                                                             <  SRR4302534.2015159/94‑1 (MQ=60)

                                 CAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCC                                                            >  SRR4302534.205597/1‑94 (MQ=60)

                                 CAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCC                                                            >  SRR4302534.2925832/1‑94 (MQ=60)

                                 CAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCC                                                            >  SRR4302534.3734435/1‑94 (MQ=60)

                                 CAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCC                                                            <  SRR4302534.5023124/94‑1 (MQ=60)

                                  AATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCT                                                           >  SRR4302534.5106595/1‑94 (MQ=60)

                                   ATTGGTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTT                                                          <  SRR4302534.5005671/94‑1 (MQ=60)

                                   ATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTGATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTT                                                          <  SRR4302534.3280396/94‑1 (MQ=60)

                                   ATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTT                                                          <  SRR4302534.6297812/94‑1 (MQ=60)

                                   ATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTT                                                          <  SRR4302534.5714162/94‑1 (MQ=60)

                                   ATTGCTGGTTGAGCTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTT                                                          <  SRR4302534.4646436/94‑1 (MQ=60)

                                    TTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTG                                                         >  SRR4302534.61769/1‑94 (MQ=60)

                                    TTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTG                                                         <  SRR4302534.2786590/94‑1 (MQ=60)

                                       CTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCT                                                      <  SRR4302534.5717684/94‑1 (MQ=60)

                                       CTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCT                                                      >  SRR4302534.1416607/1‑94 (MQ=60)

                                        TGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTG                                                     >  SRR4302534.407399/1‑94 (MQ=60)

                                         GGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGG                                                    <  SRR4302534.5832390/94‑1 (MQ=60)

                                         GGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGG                                                    >  SRR4302534.336630/1‑94 (MQ=60)

                                         GGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGG                                                    >  SRR4302534.2514719/1‑94 (MQ=60)

                                          GTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGG                                                   <  SRR4302534.3969861/94‑1 (MQ=60)

                                          GTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGC                                                   <  SRR4302534.3406522/94‑1 (MQ=60)

                                            TGAGGTTGTAACTGCGCCACAACATACCGATTTCATCGTCCTGATCCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGAT                                                 <  SRR4302534.3778217/94‑1 (MQ=60)

                                            TGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGAT                                                 <  SRR4302534.2990557/94‑1 (MQ=60)

                                             GAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATG                                                <  SRR4302534.869004/94‑1 (MQ=60)

                                             GAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATG                                                >  SRR4302534.1092330/1‑94 (MQ=60)

                                             GAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATG                                                <  SRR4302534.1457775/94‑1 (MQ=60)

                                              AGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGG                                               <  SRR4302534.6514702/94‑1 (MQ=60)

                                               GGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGTTGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGC                                              <  SRR4302534.5064168/94‑1 (MQ=60)

                                               GGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGC                                              <  SRR4302534.1692330/94‑1 (MQ=60)

                                               GGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGC                                              <  SRR4302534.5517265/94‑1 (MQ=60)

                                               GGTTGTAACTGCCCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGGTGGC                                              >  SRR4302534.4523946/1‑94 (MQ=60)

                                                GTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCG                                             <  SRR4302534.4747986/94‑1 (MQ=60)

                                                    TAACTGCGCACCGACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAA                                         >  SRR4302534.1290891/1‑94 (MQ=60)

                                                    TAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAA                                         >  SRR4302534.4312392/1‑94 (MQ=60)

                                                    TAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAA                                         <  SRR4302534.1751885/94‑1 (MQ=60)

                                                       CTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTT                                      <  SRR4302534.2574115/94‑1 (MQ=60)

                                                       CTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTT                                      >  SRR4302534.1325816/1‑94 (MQ=60)

                                                       CTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTT                                      <  SRR4302534.5340091/94‑1 (MQ=60)

                                                        TGCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTC                                     <  SRR4302534.44664/94‑1 (MQ=60)

                                                         GCGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCG                                    <  SRR4302534.4233119/94‑1 (MQ=60)

                                                          CGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGC                                   >  SRR4302534.4356130/1‑94 (MQ=60)

                                                          CGCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGC                                   <  SRR4302534.1021201/94‑1 (MQ=60)

                                                           GCACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCG                                  <  SRR4302534.4759849/94‑1 (MQ=60)

                                                            CACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGA                                 >  SRR4302534.4939716/1‑94 (MQ=60)

                                                             ACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAG                                >  SRR4302534.6074235/1‑94 (MQ=60)

                                                             ACCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAC                                >  SRR4302534.4097514/1‑94 (MQ=60)

                                                              CCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGC                               <  SRR4302534.2747650/94‑1 (MQ=60)

                                                              CCAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGC                               <  SRR4302534.2256413/94‑1 (MQ=60)

                                                               CAACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCA                              >  SRR4302534.6321043/1‑94 (MQ=60)

                                                                 ACATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCCAT                            <  SRR4302534.5254485/94‑1 (MQ=60)

                                                                  CATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATA                           >  SRR4302534.6123818/1‑94 (MQ=60)

                                                                  CATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATA                           <  SRR4302534.890744/94‑1 (MQ=60)

                                                                   ATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATAT                          <  SRR4302534.4942964/94‑1 (MQ=60)

                                                                   ATACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATAT                          <  SRR4302534.2307794/94‑1 (MQ=60)

                                                                    TACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATT                         <  SRR4302534.4787085/94‑1 (MQ=60)

                                                                    TACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATT                         >  SRR4302534.6004100/1‑94 (MQ=60)

                                                                     ACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTG                        <  SRR4302534.1706139/94‑1 (MQ=60)

                                                                     ACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTG                        <  SRR4302534.3475982/94‑1 (MQ=60)

                                                                     ACCGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTG                        <  SRR4302534.3650494/94‑1 (MQ=60)

                                                                       CGATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCG                      <  SRR4302534.6017061/94‑1 (MQ=60)

                                                                        GATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGT                     >  SRR4302534.4999417/1‑94 (MQ=60)

                                                                        GATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGT                     <  SRR4302534.2304709/94‑1 (MQ=60)

                                                                        GATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGT                     >  SRR4302534.6021496/1‑94 (MQ=60)

                                                                         ATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTA                    <  SRR4302534.2941963/94‑1 (MQ=60)

                                                                         ATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTA                    >  SRR4302534.6090443/1‑94 (MQ=60)

                                                                         ATTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTA                    >  SRR4302534.4024725/1‑94 (MQ=60)

                                                                          TTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAA                   <  SRR4302534.5102965/94‑1 (MQ=60)

                                                                          TTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAA                   <  SRR4302534.243491/94‑1 (MQ=60)

                                                                          TTTCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAA                   <  SRR4302534.3493361/94‑1 (MQ=60)

                                                                            TCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAACG                 >  SRR4302534.1330504/1‑94 (MQ=60)

                                                                            TCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAACG                 >  SRR4302534.3219488/1‑94 (MQ=60)

                                                                            TCATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAACG                 <  SRR4302534.6116579/94‑1 (MQ=60)

                                                                             CATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAACGG                >  SRR4302534.4134203/1‑94 (MQ=60)

                                                                             CATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAACGG                >  SRR4302534.5838414/1‑94 (MQ=60)

                                                                              ATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAACGGA               >  SRR4302534.3980341/1‑94 (MQ=60)

                                                                              ATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAACGGA               <  SRR4302534.1581291/94‑1 (MQ=60)

                                                                              ATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAACGGA               <  SRR4302534.3837250/94‑1 (MQ=60)

                                                                              ATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAACGGA               <  SRR4302534.2644490/94‑1 (MQ=60)

                                                                              ATCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAACGGA               <  SRR4302534.4926209/94‑1 (MQ=60)

                                                                               TCGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAACGGAT              <  SRR4302534.427673/94‑1 (MQ=60)

                                                                                CGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAACGGATG             >  SRR4302534.4297652/1‑94 (MQ=60)

                                                                                CGTCCTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAACGGATG             <  SRR4302534.5279087/94‑1 (MQ=60)

                                                                                    CTGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAACGGATGCAAA         >  SRR4302534.2549336/1‑94 (MQ=60)

                                                                                     TGATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAACGGATGCAAAA        <  SRR4302534.3483953/94‑1 (MQ=60)

                                                                                      GATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAACGGATGCAAAAT       <  SRR4302534.3068526/94‑1 (MQ=60)

                                                                                       ATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAACGGATGCAAAATC      <  SRR4302534.4347270/94‑1 (MQ=60)

                                                                                       ATGCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTCCGCGAGCAATATTGCGTAACGGATGCAAAATC      <  SRR4302534.4396870/94‑1 (MQ=60)

                                                                                         GCAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAACGGATGCAAAATCAG    <  SRR4302534.3319504/94‑1 (MQ=60)

                                                                                          CAGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAACGGATGCAAAATCAGG   >  SRR4302534.1169992/1‑94 (MQ=60)

                                                                                           AGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAACGGATGCAAAATCAGGG  >  SRR4302534.3379584/1‑94 (MQ=60)

                                                                                           AGGCGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAACGGATGCAAAATCAGGC  >  SRR4302534.1189044/1‑94 (MQ=60)

ATTTTCGTTCTGTTCTTCATAATGGCGCTGCAGCAATTGCTGGTTGAGGTTGTAACTGCGCACCAACATACCGATTTCATCGTCCTGATGCAGACGCGGTAATGCCAGTTGGTGACCAACAAGCTCCTTGGCTGGGATGGCGTTAAGTTCGCGAGCAATATTGCGTAACGGATGCAAAATCAGGC  >  NC_000913/3682526‑3682710

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`