Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,725,747 |
(C)8→9 |
coding (1254/1455 nt) |
xylB ← |
xylulokinase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,725,739 | 1 | . | C | 94.7%
| 442.3
/ 14.6
| 133 | coding (1262/1455 nt) | xylB | xylulokinase |
| Reads supporting (aligned to +/- strand): ref base . (3/4); new base C (78/48); total (81/52) |
| Fisher's exact test for biased strand distribution p-value = 4.31e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 166 total aligned reads displayed.
CTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑AT‑‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATC > NC_000913/3725647‑3725825
|
cTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑At > 2:646752/1‑93 (MQ=255)
tAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑AT‑‑c > 2:314751/1‑93 (MQ=255)
tAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑AT‑‑c > 1:2147408/1‑93 (MQ=255)
aCGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑AT‑‑ccc < 2:117882/93‑1 (MQ=255)
aCGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑AT‑‑ccc > 1:4111972/1‑93 (MQ=255)
gTAGTTGCGGCAACAATTCCATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑AT‑‑cccccc > 1:6310737/1‑93 (MQ=255)
tAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑AT‑‑ccccccc > 2:2978996/1‑93 (MQ=255)
tAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑AT‑‑ccccccc > 1:2284245/1‑93 (MQ=255)
aGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑AT‑‑cccccccc > 2:5228381/1‑93 (MQ=255)
gTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑AT‑‑ccccccccc < 2:1360879/93‑2 (MQ=255)
ttGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑AT‑‑cccccccccg < 2:4122543/93‑3 (MQ=255)
ttGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑AT‑‑cccccccccc > 2:3708140/1‑91 (MQ=255)
cGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑AT‑‑CCCCCCCCGTAC‑g < 2:2057022/93‑1 (MQ=255)
ggCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑g < 1:5847068/93‑1 (MQ=255)
caacaaTTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGt > 2:1973469/1‑93 (MQ=255)
caaTTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAAt > 2:5621337/1‑93 (MQ=255)
aTTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCCTGC‑GGTAATCg > 1:259084/1‑93 (MQ=255)
tCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAg < 2:5038296/93‑1 (MQ=255)
cAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAgc < 2:4925786/93‑1 (MQ=255)
aaTGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAgct > 1:1975546/1‑93 (MQ=255)
aTGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAgctg > 1:5774174/1‑93 (MQ=255)
aTGAGCGAATTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAgctg > 1:6298327/1‑93 (MQ=255)
tGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAgctgc < 1:4239050/93‑1 (MQ=255)
tGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAgctgc > 1:3114847/1‑93 (MQ=255)
gCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGa < 1:3655270/93‑1 (MQ=255)
cGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGAc < 2:171608/93‑1 (MQ=255)
cGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGAc < 2:972358/93‑1 (MQ=255)
cGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCCGAC‑GGTAATCGAGCTTGTGAc > 2:2120015/1‑93 (MQ=255)
cGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCACCCAGTGCTGGGCCCAC‑ATA‑CCCCCCCCGTGC‑TGTAGTCGTGcggctggc > 2:3433897/1‑91 (MQ=255)
gATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGAcc > 1:1083577/1‑93 (MQ=255)
aTTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCg < 1:992791/93‑1 (MQ=255)
aTTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCg > 2:3994234/1‑93 (MQ=255)
aTTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCg > 2:901977/1‑93 (MQ=255)
aTTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGGAATGGAGCTGCTGAGCg > 1:2854878/1‑93 (MQ=255)
ttCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTCATCGAGCTGCTGACCGCt > 2:1498014/1‑93 (MQ=255)
tctcTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTg > 1:2921245/1‑93 (MQ=255)
tctcTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCCTAC‑GGTAATCCAGCTGCTGGCCggcg > 2:5428815/1‑90 (MQ=255)
tctcTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑AT‑‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGa < 1:2485521/93‑1 (MQ=255)
tctcTGGATTCGCAGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATCCCCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCt < 2:4787532/93‑1 (MQ=255)
ctctGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGa < 2:1801356/93‑1 (MQ=255)
tctGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGat < 1:5315136/93‑1 (MQ=255)
ctGTATTCCCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGata < 2:3826686/93‑1 (MQ=255)
ctGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGata < 2:5335439/93‑1 (MQ=255)
tGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGatat < 1:5856964/93‑1 (MQ=255)
ggATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATc > 2:761449/1‑93 (MQ=255)
ggATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATc > 1:3267826/1‑93 (MQ=255)
ggATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑CGTAATCGAGCTGCTGACCGCCGATATc > 1:3924395/1‑93 (MQ=255)
gATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATcc < 2:1545478/93‑1 (MQ=255)
gATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGGAAACGAGCTGCTGACCGCTGACATcc > 2:3568290/1‑93 (MQ=255)
aTTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATCCCCCCCCCCCTAC‑GGTAATCCAGCTGCTGACCGCTGACATcc > 2:1536996/1‑93 (MQ=255)
tccccgcGATCTCCGCCAGCCTTGCTGCGCACAGTGCTGGCCCCCC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGcc < 1:1266900/90‑1 (MQ=255)
tCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGcc < 2:2441970/93‑1 (MQ=255)
gccgcGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGGAATTGAGGTGCTGAGCGCTGATATACGcctg > 1:5922272/1‑91 (MQ=255)
gccgcGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCCGAC‑GGGAATCGAGCTGCTGACCGCTGATATCCGCCAg > 1:5580591/1‑93 (MQ=255)
cgcgcgAGCTCCGCCCGCCTTTGTGCGCCCAGGGGTTGCCCCCC‑CTCCCCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGCCa < 2:6442722/91‑1 (MQ=255)
ccgcGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGGCCGCTGATATCCGCCAGc > 2:206225/1‑93 (MQ=255)
ccgcGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGCCAGc > 1:1953811/1‑93 (MQ=255)
ccgcGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGCCAGc > 1:5074770/1‑93 (MQ=255)
ccgcGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGCCAGc > 1:3002977/1‑93 (MQ=255)
ccgcGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCCGAC‑GGGAATCGAGCTGCTGACCGCTGATATACGCCAGc > 1:1557184/1‑93 (MQ=255)
cgcgATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCa < 2:2744463/93‑1 (MQ=255)
cgcgATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCa < 1:5767706/93‑1 (MQ=255)
gcgATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGCCCGCAt > 1:5665208/1‑93 (MQ=255)
gcgATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGCCAGGAt > 2:2513516/1‑93 (MQ=255)
gcgATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCAt > 2:4867314/1‑93 (MQ=255)
gcgATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCAt < 2:4432859/93‑1 (MQ=255)
gcgATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCCGAC‑GGGGATCGAGCTTCTGACCGCGGATATCCGCGAGCac > 1:4769972/1‑92 (MQ=255)
gATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCt > 2:6336023/1‑93 (MQ=255)
gATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGGAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCt > 2:2505887/1‑93 (MQ=255)
gATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCCTAC‑GGGAATCGAGCCGCTGCACGCTGATATCCGCCAGCGTCt > 2:468756/1‑93 (MQ=255)
aTCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTg < 2:2921245/93‑1 (MQ=255)
cTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGAc > 2:3769379/1‑93 (MQ=255)
gcCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCCTCTGACGCCa > 1:732875/1‑93 (MQ=255)
gcCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCa > 1:4980284/1‑93 (MQ=255)
gcCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGCAATCGAGCTGCTGACCGCTGATATTCGCCAGCATCTTACGccc > 2:5753800/1‑92 (MQ=255)
ccAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAg < 2:5525970/93‑1 (MQ=255)
gCCTTGCTGCGCCCAGTGCTGGCCCCCC‑ATC‑CCCCCCCCCTAC‑GGTACTCGCGCTGCTGACCGCTGATATCCGTCTGCATCTGACGCCAGTAc > 1:1790624/1‑93 (MQ=255)
gCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTAc < 2:5355523/93‑1 (MQ=255)
gCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGACAGCATCTGACGCCCGTAc > 1:3153124/1‑93 (MQ=255)
cTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTc > 2:4858536/1‑93 (MQ=255)
cTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTc < 2:5539745/93‑1 (MQ=255)
ttGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCa < 2:3489670/93‑1 (MQ=255)
ttGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGCAATTAAGCTGCTAACCCCTGATATTCGCCCGCCACTGACGCCCATACTCa > 2:369957/1‑93 (MQ=255)
ttGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCCTAC‑GGTAATAGAGGTGCTGAACCCCGCTATCCGCCACCCACTTGCGCCGGTACTcc > 1:274695/1‑92 (MQ=255)
ttGCTGCGCCCAGTGCTGGCCCCAC‑AT‑‑CCCCCCCCCGACGGGAAATGAAGCTCTGGACGGCGGAAATCCGCCAGCATCTACCGCCAGTACTCa > 2:2939101/1‑93 (MQ=255)
tgctgcGCCCAGTGCTGTCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCAc < 2:3832442/93‑1 (MQ=255)
tgcGCCCAGTGGTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTAc < 2:2157016/93‑1 (MQ=255)
gcccccAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTAcg < 2:3145271/90‑1 (MQ=255)
cgcCCAGTGCTGGCCCCACAAC‑‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTAcgc < 2:187717/93‑1 (MQ=255)
cgcCCAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTAcgc < 2:924879/93‑1 (MQ=255)
cccAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACgcgc < 2:5675839/93‑1 (MQ=255)
ccAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGcgcc < 1:4037849/93‑1 (MQ=255)
ccAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCCGACCGCTGGTTTCCGCCAGCATCTGACGCCAGTACTCACTAcgcggc > 1:6061308/1‑91 (MQ=255)
ccAGTGCTGCCCCCAC‑AT‑‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGcgccc < 1:4290643/93‑1 (MQ=255)
cAGTGCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGcgccc < 2:4974252/93‑1 (MQ=255)
cgTGCTGCCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGcgcccc < 2:3259304/92‑1 (MQ=255)
ggCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGcgccccgc < 2:4106305/92‑1 (MQ=255)
gCTGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGcgccccgcc > 2:1535252/1‑93 (MQ=255)
tGGCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCCCTGATATCCGCCAGCATCTGACGCCAGTACTCACTCCGCgccccgcccc > 2:4247371/1‑93 (MQ=255)
gCCCCAC‑ATC‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCa < 2:1064923/93‑1 (MQ=255)
|
CTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑AT‑‑CCCCCCCCGTAC‑GGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATC > NC_000913/3725647‑3725825
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑AT‑‑C‑CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTGC > NC_000913/3725655‑3725840
|
AGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑AT‑‑C‑CCCCCCCC > SRR4302534.1049598/1‑94 (MQ=60)
CGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACG < SRR4302534.3171777/94‑1 (MQ=60)
CGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑AT‑‑C‑CCCCCCCcctacg > SRR4302534.5888277/1‑88 (MQ=60)
GGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGG < SRR4302534.6005814/94‑1 (MQ=60)
CAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑AT‑‑C‑CCCCCCCcgaacgggcacc > SRR4302534.1162666/1‑82 (MQ=60)
aattaaatgatcgttttctccggtttctccccgatctgtgccaagCTTGCTGCGCCCAGTGCTGGCCCCACAAC‑‑C‑CCCCCCCGTACGGTAATCG < SRR4302534.4037228/49‑1 (MQ=60)
AATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑AT‑‑C‑CCCCCCCcctgcggtaatcg > SRR4302534.265831/1‑81 (MQ=60)
TTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCCCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAG < SRR4302534.4360097/94‑1 (MQ=60)
TCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGCGCTGGCCCCAC‑CT‑‑C‑CCCCCCCccttccgcagatccag > SRR4302534.2367326/1‑78 (MQ=60)
CAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCT > SRR4302534.2027268/1‑94 (MQ=60)
AATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTG > SRR4302534.5930815/1‑94 (MQ=60)
AATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑AT‑‑C‑CCCCCCCcgtacgcgaatctagcag > SRR4302534.542183/1‑76 (MQ=60)
AATGAGCGAATTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTG > SRR4302534.6468669/1‑94 (MQ=60)
ATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTGC > SRR4302534.3196759/1‑94 (MQ=60)
TGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTGCT < SRR4302534.4353338/94‑1 (MQ=60)
GAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTGCTG < SRR4302534.2023048/94‑1 (MQ=60)
GCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTGCTGAC < SRR4302534.3753502/94‑1 (MQ=60)
CGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTGCTGACC < SRR4302534.3280915/94‑1 (MQ=60)
CGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTGCTGACC < SRR4302534.5143326/94‑1 (MQ=60)
CGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTGCTGACC > SRR4302534.1111756/1‑94 (MQ=60)
GATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTGCTGACCG < SRR4302534.2286290/94‑1 (MQ=60)
GATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGGAATGGAGCTGCTGAGCG > SRR4302534.2929863/1‑94 (MQ=60)
ATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGGTGCTGACCGC > SRR4302534.6015011/1‑94 (MQ=60)
ATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTGCTGACCGC < SRR4302534.1018203/94‑1 (MQ=60)
TTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTG > SRR4302534.2997913/1‑94 (MQ=60)
TCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑AT‑‑C‑CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGAT < SRR4302534.2551549/94‑1 (MQ=60)
CTCTGGATTCTCCGCGATCTGCGCCAGTCTTGCTGCGACCAGTGCTGGCCCCAC‑AT‑‑CTCCCCCCCGTAagcttataggagatctgagcgctcca > SRR4302534.511367/1‑68 (MQ=60)
TCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATA > SRR4302534.6591823/1‑94 (MQ=60)
TCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATA < SRR4302534.5458526/94‑1 (MQ=60)
CTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATAT < SRR4302534.2767743/94‑1 (MQ=60)
TGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATC < SRR4302534.6015986/94‑1 (MQ=60)
TGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATC > SRR4302534.2914790/1‑94 (MQ=60)
TGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATC > SRR4302534.3354865/1‑94 (MQ=60)
TGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACCGTAATCGAGCTGCTGACCGCCGATATC > SRR4302534.4029528/1‑94 (MQ=60)
TGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑AT‑‑C‑CCCCCCCctaacggaaacggagctgctgacgccggtattc > SRR4302534.4457343/1‑61 (MQ=60)
TGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑AT‑‑C‑CCCCCCCccgaggggtatttaggcgcggtccggtgttgac > SRR4302534.4796031/1‑61 (MQ=60)
GGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑AT‑‑C‑CCCCCCCccaacagcaatcgggcggccccccgctgatctac > SRR4302534.6432324/1‑60 (MQ=60)
TTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGTGCTGCTGAaccctgattaccgcc > SRR4302534.3071689/1‑79 (MQ=60)
TCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTGATCGAGCTGCTGACCGCCGGTATCCGCCC > SRR4302534.5756890/1‑94 (MQ=60)
TCCCCGCGATCTCCGCCAGCCTTGCTGCGCACAGTGCTGGCCCCCC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCA < SRR4302534.1300264/94‑1 (MQ=60)
CGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATCCC‑CCCCCCCG‑ACGGGAATCGAGCTGCTGACCGCTGATATCCGCCAG > SRR4302534.5731365/1‑94 (MQ=60)
CGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGGAATTGAGGTGCTGAGCGCTGATATACGCCTG > SRR4302534.6083071/1‑94 (MQ=60)
GCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATCCC‑CCCCCCCG‑ACGGGAATCGAGCTGCTGACCGCTGATATACGCCAGC > SRR4302534.1597952/1‑94 (MQ=60)
GCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGC > SRR4302534.2004948/1‑94 (MQ=60)
GCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGC > SRR4302534.3081527/1‑94 (MQ=60)
GCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGC > SRR4302534.5211760/1‑94 (MQ=60)
GCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑AT‑‑C‑CCCCCCCcccgtcgggaaacgcgctgctgcacgccagacaccccccc > SRR4302534.139437/1‑54 (MQ=60)
CGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCCGCAT > SRR4302534.5818582/1‑94 (MQ=60)
CGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCAT < SRR4302534.5924177/94‑1 (MQ=60)
CGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCAT < SRR4302534.6005009/94‑1 (MQ=60)
CGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCCTACGGGAATCGAGCTGCTGACCCCTCATATCCGGCAGCAT > SRR4302534.3637470/1‑94 (MQ=60)
CGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑AT‑‑C‑CCCCCCCcgcacggtcatccagccgctgcaccatgatattcgccagcac > SRR4302534.4686492/1‑52 (MQ=60)
CGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑AT‑‑C‑CCCCCCCccgacggggatcgagcttctgaccgcggatatccgcgagcac > SRR4302534.4899484/1‑52 (MQ=60)
ccacccGCGCCAGCCTTGCTGCCCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCT < SRR4302534.988392/88‑1 (MQ=60)
CGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCT < SRR4302534.1949340/94‑1 (MQ=60)
TCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAACTGCTGACGGCTGATTTCCGCCAGGATCTGAC > SRR4302534.6185310/1‑94 (MQ=60)
TGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑AT‑‑C‑CCCCCCCcgcacggtaaacgagggcctgaccgctgttatccgccaacacgtcaccg > SRR4302534.2364371/1‑45 (MQ=60)
CGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCCTCTGACGCCA > SRR4302534.750995/1‑94 (MQ=60)
CGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCA > SRR4302534.5115079/1‑94 (MQ=60)
GCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTGCTGACCGCCGATATCCCCCAGCACCTGACCCCAG > SRR4302534.590089/1‑94 (MQ=60)
GCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑AT‑‑C‑CCCCCCCccgacggccatcaagcgccagcgcgcctgtatccgtctgtatgtaaggcgcg > SRR4302534.5631551/1‑42 (MQ=60)
CAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGCCGCCAGTA > SRR4302534.4049550/1‑94 (MQ=60)
AGCCTTGCTGCGCCCAGTGCTGGCCCCCC‑ATC‑C‑CCCCCCCCTACGGTACTCGCGCTGCTGACCGCTGATATCCGTCTGCATCTGACGCCAGTAC > SRR4302534.1837133/1‑94 (MQ=60)
AGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGACAGCATCTGACGCCCGTAC > SRR4302534.3236158/1‑94 (MQ=60)
AGCCTTGATGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTAC < SRR4302534.142214/94‑1 (MQ=60)
CCTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGGACGGGAATCGAGATTCGGAGCGCTGGTATCAGCCAGCATCTGACGCCcgtgatt > SRR4302534.4803673/1‑87 (MQ=34)
CTTGCTGCGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGGAATAGAGCTGCTGACCGCTGATATtcccccccacactgacccaggacccc > SRR4302534.1492092/1‑68 (MQ=60)
CTTGCTGCGCCCAGTGCTGGCCCCAC‑AT‑‑C‑CCCCCCCcctacggtaatagaggtgctgaaccccgctatccgccacccacttgcgccggtactcc > SRR4302534.281804/1‑36 (MQ=60)
CGCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGGAATCGAGCCGCTGACCGCTGATATCCGCCCGCATCTGGCGCCAGTACTCACTcagcc > SRR4302534.280803/1‑89 (MQ=60)
GCCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGC > SRR4302534.4452680/1‑94 (MQ=60)
CCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTCCGGTAATCCGGCTGCCGACAGCTGATATCCGCCCGCATCTGACGCCAGTACCTACTACGCGGC > SRR4302534.6005140/1‑94 (MQ=42)
CCCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTGCCGACCGCTGGTTTCCGCCAGCATCTGACGCCAGTACTCACTACGCGGC > SRR4302534.6226127/1‑94 (MQ=60)
CCAGTGCTGGCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCC < SRR4302534.4146111/94‑1 (MQ=60)
CCAGTGCTGCCCCCAC‑AT‑‑C‑CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCC < SRR4302534.4406896/94‑1 (MQ=60)
TGGCCCCAC‑AT‑‑C‑CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCA > SRR4302534.3167267/1‑94 (MQ=60)
GGCCCCAC‑ATC‑C‑CCCCCCCGGACGGGCATCGAGCTGCTGACCGCTGATTTCCGCCAGGATCTGACACCCATAATCACCACCCGCCCCGCCCCCA > SRR4302534.5126815/1‑94 (MQ=19)
aggctccaactcC‑CCCCCCCGTACGGTAACCGAGCTGCTGACCGCTGATATCCGCCAGCATGTGATGCCAGTACTCACTACGCGTCCCGCCCCC < SRR4302534.4273263/82‑1 (MQ=60)
GCCCCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCCCCCCGCCCCCCA > SRR4302534.6415719/1‑94 (MQ=60)
CCAC‑ATC‑C‑CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCA < SRR4302534.4217317/94‑1 (MQ=60)
cccacaccC‑CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATC < SRR4302534.4144700/86‑1 (MQ=60)
caacatcC‑CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCA < SRR4302534.2842972/87‑1 (MQ=60)
ccC‑CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTA < SRR4302534.4808788/92‑1 (MQ=60)
C‑CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCCACGTAAC > SRR4302534.5848890/1‑94 (MQ=60)
CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACA > SRR4302534.1770673/1‑94 (MQ=60)
CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACA < SRR4302534.1385534/94‑1 (MQ=60)
CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACA > SRR4302534.4906713/1‑94 (MQ=60)
CCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACAC > SRR4302534.4154483/1‑94 (MQ=60)
CCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACAC < SRR4302534.3000632/94‑1 (MQ=60)
CCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACT > SRR4302534.402618/1‑94 (MQ=60)
CCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTT < SRR4302534.662432/94‑1 (MQ=60)
CCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTT < SRR4302534.4738335/94‑1 (MQ=60)
CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTT < SRR4302534.5689826/94‑1 (MQ=60)
CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTAACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTT < SRR4302534.4928946/94‑1 (MQ=60)
CCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTG > SRR4302534.492695/1‑94 (MQ=60)
CCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTG < SRR4302534.6266456/94‑1 (MQ=60)
CCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTG < SRR4302534.2670703/94‑1 (MQ=60)
CGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTGC < SRR4302534.5635729/94‑1 (MQ=60)
CGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTGC > SRR4302534.4635979/1‑94 (MQ=60)
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AGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCCAC‑AT‑‑C‑CCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTGC > NC_000913/3725655‑3725840
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
