Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,735,666 |
T→C |
S181P (TCC→CCC) |
malS → |
alpha‑amylase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,735,666 | 0 | T | C | 99.1%
| 720.6
/ NA
| 214 | S181P (TCC→CCC) | malS | alpha‑amylase |
| Reads supporting (aligned to +/- strand): ref base T (2/0); new base C (112/100); total (114/100) |
| Fisher's exact test for biased strand distribution p-value = 5.00e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 |
Only 100 of 231 total aligned reads displayed.
ATTGCGATAGTGAAGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACATCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTAATGACCAGAGTTAC > NC_000913/3735576‑3735755
|
aTTGCGATAGTGAAGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACAccc < 1:3856131/93‑1 (MQ=255)
aTTGCGATAGTGAAGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACAccc < 1:5603937/93‑1 (MQ=255)
ttGCGATAGTGAAGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCg > 1:1995840/1‑93 (MQ=255)
tGCGATAGTGAAGAACGGTCAAATAATGTTACACCCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGc < 2:1566674/93‑1 (MQ=255)
tGCAATGGTAAAGAACGGTCAAATAATGTTACACCCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGc < 1:4833029/93‑1 (MQ=255)
cGATAGTGAAGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGccc < 2:2290700/93‑1 (MQ=255)
cGATAATGAAGAGCGGTCAAATAATGTTACACCCCGCTGCCACCAGCACCGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGccc < 2:3225545/93‑1 (MQ=255)
gATAGTGAAGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGcccc < 2:5296580/93‑1 (MQ=255)
aTAGTGAAGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCt < 1:3990640/93‑1 (MQ=255)
aaGTGAAGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCtt < 2:4114953/92‑1 (MQ=255)
aGTGAAGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCttt < 2:413623/93‑1 (MQ=255)
gtaaagaaCGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTc < 2:4775067/90‑1 (MQ=255)
gTGAAGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTGCTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTc < 1:3091242/93‑1 (MQ=255)
gTGAAGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACATCCGCTCCTTTc > 1:2498361/1‑93 (MQ=255)
gTGAAGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTc > 1:3132924/1‑93 (MQ=255)
gTGAAGAACGGTCAAATAATGTTACAAACCGCTGCCACCAGCAACGGATTACTCCTGCTGGAACGGGTAGTAAATGAGACACCCACACCTTTc > 1:1511470/1‑93 (MQ=255)
gaagaaCGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGa < 2:3791424/93‑1 (MQ=255)
gaagaaCGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGa > 1:3569057/1‑93 (MQ=255)
aagaaCGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGAc > 1:6020226/1‑93 (MQ=255)
aagaaCGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGAc < 1:1576647/93‑1 (MQ=255)
agaaCGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACt > 2:6025941/1‑93 (MQ=255)
aaCGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTgg < 2:2857153/93‑1 (MQ=255)
aCGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGc < 1:3340558/93‑1 (MQ=255)
ggTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCAt > 1:1692901/1‑93 (MQ=255)
ggTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCAt < 2:5621802/93‑1 (MQ=255)
tCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATaa > 2:3519669/1‑93 (MQ=255)
cAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAAc > 1:2891787/1‑93 (MQ=255)
cAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAAc > 2:5577423/1‑93 (MQ=255)
cAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAAc > 2:5390670/1‑93 (MQ=255)
aaaTAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACg > 2:1537715/1‑93 (MQ=255)
aaaTAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACg > 2:200445/1‑93 (MQ=255)
aataatGTTACAACCCGCTGCCACCAGCAACGGTTCACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGc < 1:5186479/93‑1 (MQ=255)
aataatGTAACAACCCGCTGCCGCCAACAACGGTTTGCTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGc < 1:4369261/93‑1 (MQ=255)
ataatGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACATCCGCCCCTTTCGACTGGCATAACGcc > 2:6067012/1‑93 (MQ=255)
ataatGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGcc > 2:188467/1‑93 (MQ=255)
taatGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCa > 2:3851420/1‑93 (MQ=255)
taatGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCa > 1:183230/1‑93 (MQ=255)
taatGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCa < 2:5701832/93‑1 (MQ=255)
aatGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCAc < 2:2978038/93‑1 (MQ=255)
aatGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCAc < 1:2545111/93‑1 (MQ=255)
aatGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCAc > 1:3492486/1‑93 (MQ=255)
aatATTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCAc > 1:5333829/1‑93 (MQ=255)
atGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACg > 1:2401277/1‑93 (MQ=255)
tGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATACCGCCACgg < 1:6311975/93‑1 (MQ=255)
ttACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGCCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGtt < 2:2063063/93‑1 (MQ=255)
tccAACCGGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAAAAACTGACACCCCCGCCCCTTTCGACTGGCATAACGCCACGGttt < 2:148641/91‑1 (MQ=255)
tACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGttt > 2:825137/1‑93 (MQ=255)
caccccGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTAc < 2:5710587/90‑1 (MQ=255)
caccccGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTAc < 2:6368367/90‑1 (MQ=255)
aaCCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACt > 2:6472923/1‑93 (MQ=255)
aCCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACCCCACGGTTTACtt > 1:3412346/1‑93 (MQ=255)
cccGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACttt < 1:1846355/93‑1 (MQ=255)
ccGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTtg > 1:1717327/1‑93 (MQ=255)
cGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTtgt < 1:4886003/93‑1 (MQ=255)
cGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTtgt < 2:1387589/93‑1 (MQ=255)
cGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTtgt < 1:278315/93‑1 (MQ=255)
tGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCt < 2:1772430/93‑1 (MQ=255)
gCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTg > 1:3667703/1‑93 (MQ=255)
accaGCAACGGTTTACTCCTGCTGGACCGGGGAGAAACTGACACACCCGCTCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACa < 2:4520004/93‑1 (MQ=255)
accaGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACa > 2:2521064/1‑93 (MQ=255)
ccaGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAg > 1:3141059/1‑93 (MQ=255)
ccaGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAg > 2:4672986/1‑93 (MQ=255)
aGCAACTGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGAt < 2:3093756/93‑1 (MQ=255)
aGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGAt < 2:6231333/93‑1 (MQ=255)
aGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGAt > 2:1191163/1‑93 (MQ=255)
aGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGAt < 1:1192549/93‑1 (MQ=255)
gCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATc > 2:2952172/1‑93 (MQ=255)
gCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATc > 2:3045913/1‑93 (MQ=255)
gCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATc < 2:5450198/93‑1 (MQ=255)
cGGTTTCCTCCTGCTGGAACGGGCAGAAACTGACACCCCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGttt < 1:648904/93‑1 (MQ=255)
ggTTTACTCCTGCTGGAACGGGCAGAAACTGACACCCCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTc < 2:4318021/93‑1 (MQ=255)
gTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCg > 1:6085692/1‑93 (MQ=255)
tttACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGa > 2:5508549/1‑93 (MQ=255)
tttACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGa > 1:4705914/1‑93 (MQ=255)
cTCCTGCTGGAACGGGCAGAAACTGACGCACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAAc < 2:2496991/93‑1 (MQ=255)
cTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAAc < 2:2326531/93‑1 (MQ=255)
tCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACg > 1:1810034/1‑93 (MQ=255)
tCCTGCGGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACg < 2:1375924/93‑1 (MQ=255)
ctgctgGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGc > 2:3717603/1‑93 (MQ=255)
ctgctgGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGc > 2:1709833/1‑93 (MQ=255)
ctgctgGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGc > 1:4204607/1‑93 (MQ=255)
tgctgGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCg < 2:5239025/93‑1 (MQ=255)
tgctgGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCg < 1:274607/93‑1 (MQ=255)
gctgGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGa > 1:2273537/1‑93 (MQ=255)
ctgGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGAt < 1:5234211/93‑1 (MQ=255)
tgGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATc > 2:1031689/1‑93 (MQ=255)
gAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATccc > 1:6090451/1‑93 (MQ=255)
aCGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAg < 1:5727010/93‑1 (MQ=255)
aCGGACAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAg < 1:2678077/93‑1 (MQ=255)
gggCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTa < 1:881440/93‑1 (MQ=255)
ggCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTaa > 1:1157801/1‑93 (MQ=255)
cAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTAATg > 2:1318533/1‑93 (MQ=255)
aGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTAATGa > 2:338252/1‑93 (MQ=255)
aGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTAATGa < 1:131135/93‑1 (MQ=255)
cTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTAATGACCaga < 1:2205269/93‑1 (MQ=255)
gACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTAATGACGAGAGt > 1:3367653/1‑93 (MQ=255)
gACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTAATGACCAGAGt < 1:4640682/93‑1 (MQ=255)
gACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTAATGACCAGAGt > 2:2126218/1‑93 (MQ=255)
cacaCCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTAATGACCAGAGTTa > 1:4510477/1‑93 (MQ=255)
cacaCCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTAATGACCAGAGTTa < 2:5836702/93‑1 (MQ=255)
|
ATTGCGATAGTGAAGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACATCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTAATGACCAGAGTTAC > NC_000913/3735576‑3735755
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAAATTGCGATAGTGAAGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACATCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTAATGACCAGAGTTACGGAC > NC_000913/3735573‑3735759
|
CAAATTGCGATAGTGAAGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACAC > SRR4302534.1138721/1‑94 (MQ=60)
CAAATTGCGATAGTGAAGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACAC < SRR4302534.3214504/94‑1 (MQ=60)
CAAATTGCGATAGTGAAGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACAC > SRR4302534.4092555/1‑94 (MQ=60)
AAATTGCGATAGTGAAGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACC > SRR4302534.897170/1‑94 (MQ=60)
AAATTGCGATAGTGAAGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACC > SRR4302534.5095239/1‑94 (MQ=60)
AATTGCGATAGTGAAGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCC > SRR4302534.1743152/1‑94 (MQ=60)
ATTGCGATAGTGAAGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCG < SRR4302534.3959654/94‑1 (MQ=60)
ATTGCGATAGTGAAGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCG > SRR4302534.2279582/1‑94 (MQ=60)
ATTGCGATAGTGAAGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCG > SRR4302534.2048112/1‑94 (MQ=60)
ATTGCGATAGTGAAGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCG < SRR4302534.485838/94‑1 (MQ=60)
ATTGCGATAGTGAAGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCG < SRR4302534.5355231/94‑1 (MQ=60)
ATTGCGATAGTGAAGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCG < SRR4302534.5755497/94‑1 (MQ=60)
tgcaatggtaAAGAACGGTCAAATAATGTTACACCCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCC < SRR4302534.4964153/84‑1 (MQ=60)
ATAGTGAAGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTT < SRR4302534.4097437/94‑1 (MQ=60)
TAGTGAAGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTT > SRR4302534.1666665/1‑94 (MQ=60)
AGTGAAGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACATCCGCTCCTTTC > SRR4302534.2564711/1‑94 (MQ=60)
AGTGAAGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTC > SRR4302534.3215275/1‑94 (MQ=60)
AGTGAAGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTC < SRR4302534.4985872/94‑1 (MQ=60)
GTGAAGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTGCTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCG < SRR4302534.3172532/94‑1 (MQ=60)
TGAAGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGA > SRR4302534.3665049/1‑94 (MQ=60)
GAAGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGAC > SRR4302534.6183827/1‑94 (MQ=60)
AAGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACT < SRR4302534.1617898/94‑1 (MQ=60)
AGAGCGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTG < SRR4302534.478008/94‑1 (MQ=60)
AGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTG < SRR4302534.1802691/94‑1 (MQ=60)
AGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTG > SRR4302534.2372025/1‑94 (MQ=60)
AGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGACAGAAACTGACACACCCGCCCCTTTCGACTG < SRR4302534.119725/94‑1 (MQ=60)
GAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGG > SRR4302534.2569382/1‑94 (MQ=60)
ACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCA < SRR4302534.3429939/94‑1 (MQ=60)
CGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCAT > SRR4302534.1736899/1‑94 (MQ=60)
GGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATA > SRR4302534.6188386/1‑94 (MQ=60)
GTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAA < SRR4302534.2997792/94‑1 (MQ=60)
GTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAA > SRR4302534.3112342/1‑94 (MQ=60)
TCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAAC > SRR4302534.2967673/1‑94 (MQ=60)
TCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAAC > SRR4302534.3200588/1‑94 (MQ=60)
AATAATGTTACAACCCGCTGCCACCAGCAACGGTTCACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCC < SRR4302534.5326276/94‑1 (MQ=60)
AATAATGTAACAACCCGCTGCCGCCAACAACGGTTTGCTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCC < SRR4302534.4487009/94‑1 (MQ=60)
ATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCA > SRR4302534.188048/1‑94 (MQ=60)
TAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCAC > SRR4302534.3586363/1‑94 (MQ=60)
TAATATTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCAC > SRR4302534.5477672/1‑94 (MQ=60)
AATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACG > SRR4302534.2465105/1‑94 (MQ=60)
AATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACG < SRR4302534.6255393/94‑1 (MQ=60)
AATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACG < SRR4302534.2612606/94‑1 (MQ=60)
AATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACG > SRR4302534.3542939/1‑94 (MQ=60)
TGTTACACCCCGCTGCCGCCAGCACCGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGT < SRR4302534.2113664/94‑1 (MQ=60)
TGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATACCGCCACGGT < SRR4302534.6482608/94‑1 (MQ=60)
TGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGT > SRR4302534.1384051/1‑94 (MQ=60)
TTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTT < SRR4302534.4062172/94‑1 (MQ=60)
TTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTT > SRR4302534.928296/1‑94 (MQ=60)
TACACCCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAACCTGACACCCCCGCCCCTTTCGACTGGCATAACGCCACGGTTTA < SRR4302534.3636671/94‑1 (MQ=60)
TACAACCCGCTGCCACCAGCAACGGTTTACTGCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTA > SRR4302534.5783740/1‑94 (MQ=60)
TACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTA > SRR4302534.2411417/1‑94 (MQ=60)
AACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACCCCACGGTTTACTT > SRR4302534.3504000/1‑94 (MQ=60)
ACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTT > SRR4302534.5952483/1‑94 (MQ=60)
CCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTG > SRR4302534.1761939/1‑94 (MQ=60)
CCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTG < SRR4302534.1894389/94‑1 (MQ=60)
CCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTG > SRR4302534.4656240/1‑94 (MQ=60)
CCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGT < SRR4302534.3454342/94‑1 (MQ=60)
CGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTG < SRR4302534.5018511/94‑1 (MQ=60)
CGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTG < SRR4302534.285517/94‑1 (MQ=60)
TGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTG > SRR4302534.3766287/1‑94 (MQ=60)
CACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACA < SRR4302534.2615623/94‑1 (MQ=60)
CACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACA > SRR4302534.2834938/1‑94 (MQ=60)
CCCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAG < SRR4302534.2537127/94‑1 (MQ=60)
ACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAG > SRR4302534.3223672/1‑94 (MQ=60)
CCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGA > SRR4302534.664772/1‑94 (MQ=60)
CAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGAT < SRR4302534.64829/94‑1 (MQ=60)
AGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATC < SRR4302534.2809663/94‑1 (MQ=60)
AGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATC > SRR4302534.3652566/1‑94 (MQ=60)
AGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATC < SRR4302534.6263808/94‑1 (MQ=60)
AGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATC < SRR4302534.456289/94‑1 (MQ=60)
AGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATC < SRR4302534.1223907/94‑1 (MQ=60)
AGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATC > SRR4302534.5135629/1‑94 (MQ=60)
GCAACGGTTTGCTCCTGCTGGAACGGGCAGAAACTGACACCCCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCG < SRR4302534.4082185/94‑1 (MQ=60)
GCAACGGTTTACTCCTGCTGTAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGGTCG < SRR4302534.2766891/94‑1 (MQ=60)
CAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGT > SRR4302534.1797880/1‑94 (MQ=60)
ACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTT > SRR4302534.3370849/1‑94 (MQ=60)
CGTTTTACTCTTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTC < SRR4302534.4916021/94‑1 (MQ=60)
CGGTTTCCTCCTGCTGGAACGGGCAGAAACTGACACCCCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTC < SRR4302534.664640/94‑1 (MQ=60)
GGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCG > SRR4302534.3674002/1‑94 (MQ=60)
GGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCG > SRR4302534.6251172/1‑94 (MQ=60)
GGTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCG < SRR4302534.1913628/94‑1 (MQ=60)
GTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGA > SRR4302534.4833662/1‑94 (MQ=60)
GTTTACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTCTGTGGTGACAGATCGTTTCGA > SRR4302534.346196/1‑94 (MQ=60)
TCCTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAA < SRR4302534.4227361/94‑1 (MQ=60)
TACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAA > SRR4302534.5419139/1‑94 (MQ=60)
TACTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAA > SRR4302534.4611817/1‑94 (MQ=60)
CTCCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACG > SRR4302534.1857038/1‑94 (MQ=60)
CCTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGC > SRR4302534.4318112/1‑94 (MQ=60)
CTGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCG > SRR4302534.3557081/1‑94 (MQ=60)
TGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGA < SRR4302534.281715/94‑1 (MQ=60)
TGCTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGA > SRR4302534.2333842/1‑94 (MQ=60)
CTGGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATC < SRR4302534.5375524/94‑1 (MQ=60)
GGAACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCC > SRR4302534.6256084/1‑94 (MQ=60)
ACGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGT < SRR4302534.5882187/94‑1 (MQ=60)
ACGGACAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGT < SRR4302534.2748876/94‑1 (MQ=60)
CGGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTA < SRR4302534.5479252/94‑1 (MQ=60)
GGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTAA > SRR4302534.1188174/1‑94 (MQ=60)
GGGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTAA < SRR4302534.903726/94‑1 (MQ=60)
GGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTAAT > SRR4302534.1984068/1‑94 (MQ=60)
GGCAGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTAAT < SRR4302534.4436519/94‑1 (MQ=60)
AGAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTAATGAC < SRR4302534.134599/94‑1 (MQ=60)
GAAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTAATGACC > SRR4302534.3357196/1‑94 (MQ=60)
AAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTAATGACCA < SRR4302534.3853240/94‑1 (MQ=60)
AAACTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTAATGACCA < SRR4302534.6579913/94‑1 (MQ=60)
CTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTAATGACCAGAG > SRR4302534.2875229/1‑94 (MQ=60)
CTGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTAATGACCAGAG < SRR4302534.2263629/94‑1 (MQ=60)
TGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTAATGACGAGAGT > SRR4302534.3457875/1‑94 (MQ=60)
TGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTAATGACCAGAGT < SRR4302534.1864427/94‑1 (MQ=60)
TGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTAATGACCAGAGT < SRR4302534.1892968/94‑1 (MQ=60)
TGACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTAATGACCAGAGT > SRR4302534.1571323/1‑94 (MQ=60)
GACACCCCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTAATGACCAGAGTT < SRR4302534.5364978/94‑1 (MQ=60)
GACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTAATGACCAGAGTT < SRR4302534.4766610/94‑1 (MQ=60)
GACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTAATGACCAGAGTT < SRR4302534.1308085/94‑1 (MQ=60)
GACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTAATGACCAGAGTT < SRR4302534.1580128/94‑1 (MQ=60)
ACACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTAATGACCAGAGTTA > SRR4302534.4632622/1‑94 (MQ=60)
CACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGTCAGATCGTTTCGAAAACGGCGATCCCAGTAATGACCAGAGTTAC > SRR4302534.3221734/1‑94 (MQ=60)
CACACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTAATGACCAGAGTTAC < SRR4302534.5791402/94‑1 (MQ=60)
ACACCCGCCCCTTTCGACTGGCATAACGCCACGGCTTACTTTGTGCTGACACATCGTTTCGACAACGGCGATCCCAGTCATGACCCGCGTTACG > SRR4302534.1180811/1‑94 (MQ=60)
ACCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTAATGACCAGAGTTACGGA > SRR4302534.660330/1‑94 (MQ=60)
CCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTAATGACCAGAGTTACGGAC < SRR4302534.1986153/94‑1 (MQ=60)
|
CAAATTGCGATAGTGAAGAACGGTCAAATAATGTTACAACCCGCTGCCACCAGCAACGGTTTACTCCTGCTGGAACGGGCAGAAACTGACACATCCGCCCCTTTCGACTGGCATAACGCCACGGTTTACTTTGTGCTGACAGATCGTTTCGAAAACGGCGATCCCAGTAATGACCAGAGTTACGGAC > NC_000913/3735573‑3735759
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
