Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,758,509	T→C	D123G (GAC→GGC)	selA ←	selenocysteine synthase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,758,509	0	T	C	100.0%	911.5 / NA	262	D123G (GAC→GGC)	selA	selenocysteine synthase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (154/108); total (154/108)

Only 100 of 279 total aligned reads displayed.

TTGTTATTGACGATACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGTCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGCTCGCCCAAGGTTG  >  NC_000913/3758419‑3758598

ttGTTATTGACGATACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGccc                                                                                         >  1:2362620/1‑93 (MQ=255)

      ttGACGATACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCa                                                                                   <  2:5987797/93‑1 (MQ=255)

      ttGACGATACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCa                                                                                   >  2:2263791/1‑93 (MQ=255)

      ttGACGATACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCa                                                                                   <  2:2633338/93‑1 (MQ=255)

       tGACGATACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCAt                                                                                  <  1:244847/93‑1 (MQ=255)

        gACGATACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATa                                                                                 <  1:6338724/93‑1 (MQ=255)

        gACGATACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATa                                                                                 >  1:3251181/1‑93 (MQ=255)

         aCGATACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATAc                                                                                <  1:667667/93‑1 (MQ=255)

          cGATACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACt                                                                               <  2:2974242/93‑1 (MQ=255)

           gATACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTc                                                                              >  1:4773698/1‑93 (MQ=255)

             tACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGa                                                                            >  1:5717017/1‑93 (MQ=255)

             tACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGa                                                                            <  2:4970140/93‑1 (MQ=255)

              aCAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAg                                                                           >  1:1353805/1‑93 (MQ=255)

              aCAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAg                                                                           <  2:5650286/93‑1 (MQ=255)

              aCAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAg                                                                           <  2:2811669/93‑1 (MQ=255)

               cAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAgg                                                                          >  1:2529040/1‑93 (MQ=255)

               cAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAgg                                                                          <  1:776595/93‑1 (MQ=255)

                aGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAggg                                                                         >  2:4561620/1‑93 (MQ=255)

                 ggCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGt                                                                        >  2:2160165/1‑93 (MQ=255)

                  gCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTc                                                                       <  2:2767655/93‑1 (MQ=255)

                  gCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTc                                                                       <  1:2888352/93‑1 (MQ=255)

                   cATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCa                                                                      >  1:4409546/1‑93 (MQ=255)

                     tCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACt                                                                    >  2:5135213/1‑93 (MQ=255)

                     tCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACt                                                                    <  2:3369452/93‑1 (MQ=255)

                     tCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACt                                                                    >  1:1623768/1‑93 (MQ=255)

                          cGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGa                                                               >  1:2398064/1‑93 (MQ=255)

                            cccccGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAAc                                                             <  2:3712483/93‑1 (MQ=255)

                            cccccGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAAc                                                             <  2:772063/93‑1 (MQ=255)

                             ccccGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACg                                                            >  2:1921599/1‑93 (MQ=255)

                             ccccGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACg                                                            <  2:1152863/93‑1 (MQ=255)

                             ccccGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACg                                                            >  2:100578/1‑93 (MQ=255)

                             ccccGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACg                                                            >  2:1444632/1‑93 (MQ=255)

                             ccccGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACg                                                            <  1:407368/93‑1 (MQ=255)

                              cccGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGCACGc                                                           >  1:3588870/1‑93 (MQ=255)

                              cccGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGc                                                           >  2:2313808/1‑93 (MQ=255)

                              cccGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGc                                                           >  2:6383751/1‑93 (MQ=255)

                              cccGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGc                                                           >  1:204088/1‑93 (MQ=255)

                               ccGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCa                                                          <  1:1141315/93‑1 (MQ=255)

                               ccGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCa                                                          >  2:5909997/1‑93 (MQ=255)

                                cGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCAt                                                         <  2:2864913/93‑1 (MQ=255)

                                 gTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATa                                                        <  2:3324293/93‑1 (MQ=255)

                                 gTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATa                                                        >  2:2887172/1‑93 (MQ=255)

                                 gTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATa                                                        >  2:4293522/1‑93 (MQ=255)

                                   aaTACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGc                                                      >  2:6269580/1‑93 (MQ=255)

                                    aTACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGcc                                                     <  2:5809463/93‑1 (MQ=255)

                                     tccGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCt                                                    >  2:181494/3‑93 (MQ=255)

                                      aCGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTg                                                   >  2:357866/1‑93 (MQ=255)

                                      aCGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTg                                                   <  2:3767359/93‑1 (MQ=255)

                                      aCGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTg                                                   <  2:4360769/93‑1 (MQ=255)

                                       cGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTgc                                                  >  2:6349410/1‑93 (MQ=255)

                                           acaGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCaa                                              >  1:5637832/1‑93 (MQ=255)

                                            cagcagCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAAc                                             <  1:4225775/93‑1 (MQ=255)

                                            cagcagCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAAc                                             <  1:5501669/93‑1 (MQ=255)

                                             agcagcTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACg                                            >  2:6127046/1‑93 (MQ=255)

                                               cagcGGCGCCAGCGCCCGATCGCGAGGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGc                                          <  1:641979/93‑1 (MQ=255)

                                                 gcTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCtt                                        >  1:3215137/1‑93 (MQ=255)

                                                   tGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTcc                                      <  1:6165830/93‑1 (MQ=255)

                                                     cgcCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCAc                                    >  1:4485727/1‑93 (MQ=255)

                                                      gcCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCAcc                                   >  1:5162041/1‑93 (MQ=255)

                                                      gcCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCAcc                                   <  1:2972294/93‑1 (MQ=255)

                                                       ccAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACcg                                  >  2:3979116/1‑93 (MQ=255)

                                                       ccAGCGCCCGATCGCGATGTACGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACcg                                  >  1:2599194/1‑93 (MQ=255)

                                                        cAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACcgc                                 <  1:4130777/93‑1 (MQ=255)

                                                         aGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACcgcg                                <  1:3820068/93‑1 (MQ=255)

                                                          gcgcCCAATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCgg                               >  2:123962/1‑93 (MQ=255)

                                                               cGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTcc                          <  1:5858490/93‑1 (MQ=255)

                                                                gATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCg                         >  1:2292586/1‑93 (MQ=255)

                                                                gATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCg                         <  2:4259243/93‑1 (MQ=255)

                                                                gATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCg                         <  1:4887833/93‑1 (MQ=255)

                                                                 aTCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGc                        >  2:3224326/1‑93 (MQ=255)

                                                                 aTCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGc                        >  2:5562684/1‑93 (MQ=255)

                                                                  tCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGcc                       >  1:5314720/1‑93 (MQ=255)

                                                                  tCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGcc                       <  1:1837452/93‑1 (MQ=255)

                                                                  tCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGcc                       <  2:3516868/93‑1 (MQ=255)

                                                                   cgcgATGTCCGCGTCCTGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCt                      <  2:5475786/93‑1 (MQ=255)

                                                                   cgcgATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCt                      >  1:3910924/1‑93 (MQ=255)

                                                                    gcgATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTg                     >  2:4766551/1‑93 (MQ=255)

                                                                      gATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTa                   >  1:6186446/1‑93 (MQ=255)

                                                                      gATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTCCCACCGCGGCTTCCGCCTGTa                   <  2:3140418/93‑1 (MQ=255)

                                                                       aTGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTaa                  >  1:1420169/1‑93 (MQ=255)

                                                                       aTGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTaa                  >  2:1725091/1‑93 (MQ=255)

                                                                        tGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTaaa                 >  1:282508/1‑93 (MQ=255)

                                                                          tCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCTACCGCGGCTTCCGCCTGTAAAGc               <  2:5249673/93‑1 (MQ=255)

                                                                          tCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGc               <  1:6034370/93‑1 (MQ=255)

                                                                          tCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGc               >  2:5680026/1‑93 (MQ=255)

                                                                          tCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCCGCCTCCGCCTGTAAAGc               >  1:3585033/1‑93 (MQ=255)

                                                                             gcgTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGCTCg            >  2:518019/1‑93 (MQ=255)

                                                                             gcgTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGCTCg            >  1:959688/1‑93 (MQ=255)

                                                                               gTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGGTTCCGCCTCTAAAGCTCgac          >  1:1025125/1‑91 (MQ=255)

                                                                               gTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGCTCGcc          <  2:2020414/93‑1 (MQ=255)

                                                                               gTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGCTCGcc          >  1:481152/1‑93 (MQ=255)

                                                                                  cGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGCTCGCCCaa       >  1:6262322/1‑93 (MQ=255)

                                                                                  cGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGCTCGCCCaa       >  2:1544124/1‑93 (MQ=255)

                                                                                   ggCGTCGCCCAGATCATACTCGAGTGTCACTGTCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGCTCGCCCAAg      <  1:3034775/93‑1 (MQ=255)

                                                                                   ggCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGCTCGCCCAAg      >  2:5411260/1‑93 (MQ=255)

                                                                                    gCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGCTCGCCCAAgg     <  2:3478851/93‑1 (MQ=255)

                                                                                    gCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGCTCGCCCAAgg     >  1:5046911/1‑93 (MQ=255)

                                                                                     cgtcgcCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGCTCGCCCAAGGt    <  2:4448778/93‑1 (MQ=255)

                                                                                      gtcgccCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGCTCGCCCAAGGtt   >  2:3615155/1‑93 (MQ=255)

                                                                                       tcgccCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGCTCGCCCAAGGTTg  <  2:652519/93‑1 (MQ=255)

TTGTTATTGACGATACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGTCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGCTCGCCCAAGGTTG  >  NC_000913/3758419‑3758598

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CATTGTTATTGACGATACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGTCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGCTCGCCCAAGGTTGGTA  >  NC_000913/3758417‑3758601

CATTGTTATTGACGATACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCC                                                                                             >  SRR4302534.6370968/1‑94 (MQ=60)

CATTGTTATTGACGATACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCC                                                                                             >  SRR4302534.6545996/1‑94 (MQ=60)

CATTGTTATTGACGATACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCC                                                                                             >  SRR4302534.3663085/1‑94 (MQ=60)

 ATTGTTATTGACGATACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCC                                                                                            >  SRR4302534.2425333/1‑94 (MQ=60)

 ATTGTTATTGACGATACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCC                                                                                            >  SRR4302534.2404076/1‑94 (MQ=60)

 ATTGTTATTGACGATACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCC                                                                                            >  SRR4302534.5835016/1‑94 (MQ=60)

   TGTTATTGACGATACAGGCATCTTCGGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAG                                                                                          <  SRR4302534.4973463/94‑1 (MQ=60)

    GTTATTGACGATACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGA                                                                                         >  SRR4302534.4575470/1‑94 (MQ=60)

     TTATTGACGATACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGAT                                                                                        >  SRR4302534.2959108/1‑94 (MQ=60)

        TTGACGATACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCAT                                                                                     <  SRR4302534.2505388/94‑1 (MQ=60)

         TGACGATACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATA                                                                                    <  SRR4302534.251250/94‑1 (MQ=60)

         TGACGATACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATA                                                                                    >  SRR4302534.3337766/1‑94 (MQ=60)

          GACGATACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATAC                                                                                   <  SRR4302534.6509945/94‑1 (MQ=60)

          GACGATACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATAC                                                                                   >  SRR4302534.2362983/1‑94 (MQ=60)

           ACGATACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACT                                                                                  <  SRR4302534.683930/94‑1 (MQ=60)

            CGATACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTC                                                                                 >  SRR4302534.3073537/1‑94 (MQ=60)

            CGATACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTC                                                                                 >  SRR4302534.3107228/1‑94 (MQ=60)

            CGATACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTC                                                                                 >  SRR4302534.4921018/1‑94 (MQ=60)

            CGATACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTC                                                                                 >  SRR4302534.4903313/1‑94 (MQ=60)

             GATACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCG                                                                                >  SRR4302534.2567130/1‑94 (MQ=60)

              ATACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGA                                                                               >  SRR4302534.5871911/1‑94 (MQ=60)

              ATACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGA                                                                               >  SRR4302534.4392784/1‑94 (MQ=60)

              ATACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGA                                                                               <  SRR4302534.377779/94‑1 (MQ=60)

               TACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAG                                                                              >  SRR4302534.5017419/1‑94 (MQ=60)

               TACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAG                                                                              >  SRR4302534.1389487/1‑94 (MQ=60)

                ACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGG                                                                             >  SRR4302534.5451866/1‑94 (MQ=60)

                ACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGG                                                                             >  SRR4302534.2596146/1‑94 (MQ=60)

                 CAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGG                                                                            <  SRR4302534.795945/94‑1 (MQ=60)

                  AGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGT                                                                           >  SRR4302534.6465771/1‑94 (MQ=60)

                    GCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCA                                                                         >  SRR4302534.758380/1‑94 (MQ=60)

                    GCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCA                                                                         <  SRR4302534.4216656/94‑1 (MQ=60)

                    GCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCA                                                                         >  SRR4302534.4528557/1‑94 (MQ=60)

                    GCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCA                                                                         <  SRR4302534.2979407/94‑1 (MQ=60)

                    GCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCA                                                                         <  SRR4302534.2964135/94‑1 (MQ=60)

                    GCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCA                                                                         <  SRR4302534.1898039/94‑1 (MQ=60)

                     CATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCAC                                                                        >  SRR4302534.637772/1‑94 (MQ=60)

                      ATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACT                                                                       >  SRR4302534.5103760/1‑94 (MQ=60)

                      ATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACT                                                                       >  SRR4302534.1666136/1‑94 (MQ=60)

                       TCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTG                                                                      <  SRR4302534.3688049/94‑1 (MQ=60)

                       TCATCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTA                                                                      <  SRR4302534.748786/94‑1 (MQ=60)

                        CTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGG                                                                     >  SRR4302534.4445044/1‑94 (MQ=60)

                          TCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCG                                                                   >  SRR4302534.2918050/1‑94 (MQ=60)

                          TCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCG                                                                   >  SRR4302534.3337699/1‑94 (MQ=60)

                          TCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCG                                                                   >  SRR4302534.136303/1‑94 (MQ=60)

                           CCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGA                                                                  >  SRR4302534.2461786/1‑94 (MQ=60)

                             GCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAAC                                                                <  SRR4302534.2597674/94‑1 (MQ=60)

                             GCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAAC                                                                >  SRR4302534.398454/1‑94 (MQ=60)

                               CCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGGGAACGC                                                              <  SRR4302534.4768354/94‑1 (MQ=60)

                               CCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGCACGC                                                              >  SRR4302534.3685392/1‑94 (MQ=60)

                               CCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGC                                                              <  SRR4302534.417781/94‑1 (MQ=60)

                               CCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGC                                                              >  SRR4302534.209447/1‑94 (MQ=60)

                                CCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCA                                                             >  SRR4302534.5651426/1‑94 (MQ=60)

                                CCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCA                                                             >  SRR4302534.2008122/1‑94 (MQ=60)

                                 CCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCAT                                                            <  SRR4302534.1171198/94‑1 (MQ=60)

                                  CGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATA                                                           >  SRR4302534.1426043/1‑94 (MQ=60)

                                   GTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAG                                                          >  SRR4302534.5800992/1‑94 (MQ=60)

                                    TAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGC                                                         >  SRR4302534.1604847/1‑94 (MQ=60)

                                     AATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCC                                                        >  SRR4302534.5226624/1‑94 (MQ=60)

                                      ATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCT                                                       <  SRR4302534.3537880/94‑1 (MQ=60)

                                      ATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCT                                                       <  SRR4302534.5491164/94‑1 (MQ=60)

                                         CGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCG                                                    <  SRR4302534.4612894/94‑1 (MQ=60)

                                            CACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAA                                                 >  SRR4302534.2806686/1‑94 (MQ=60)

                                            CACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAA                                                 >  SRR4302534.5969066/1‑94 (MQ=60)

                                            CACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAA                                                 >  SRR4302534.5790422/1‑94 (MQ=60)

                                              CAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACG                                               >  SRR4302534.1493752/1‑94 (MQ=60)

                                              CAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACG                                               <  SRR4302534.5650049/94‑1 (MQ=60)

                                              CAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACG                                               <  SRR4302534.4339673/94‑1 (MQ=60)

                                              CAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACG                                               <  SRR4302534.316782/94‑1 (MQ=60)

                                               AGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGG                                              >  SRR4302534.6436329/1‑94 (MQ=60)

                                                 CAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCT                                            >  SRR4302534.1436516/1‑94 (MQ=60)

                                                 CAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCT                                            >  SRR4302534.25976/1‑94 (MQ=60)

                                                 CAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCT                                            <  SRR4302534.4117655/94‑1 (MQ=60)

                                                 CAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCT                                            >  SRR4302534.2131721/1‑94 (MQ=60)

                                                 CAGCGGCGCCAGCGCCCGATCGCGAGGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCT                                            <  SRR4302534.657554/94‑1 (MQ=60)

                                                  AGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTT                                           >  SRR4302534.1083598/1‑94 (MQ=60)

                                                  AGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTT                                           <  SRR4302534.2784416/94‑1 (MQ=60)

                                                  AGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTT                                           >  SRR4302534.3300467/1‑94 (MQ=60)

                                                   agtgctcccGCGCCCGACCGCCATGTCCGCGTCCGGCGTCGCCCAGATCATCCTCGAGGGCCGCTGGCGAACGCATAGCCTGCGCAACGGCTTC                                          <  SRR4302534.400602/85‑1 (MQ=60)

                                                     TGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCA                                        <  SRR4302534.6333537/94‑1 (MQ=60)

                                                     TGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCA                                        >  SRR4302534.673296/1‑94 (MQ=60)

                                                      GCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCAC                                       <  SRR4302534.1015656/94‑1 (MQ=60)

                                                      GCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCAC                                       >  SRR4302534.4607100/1‑94 (MQ=60)

                                                       CGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACC                                      <  SRR4302534.2458750/94‑1 (MQ=60)

                                                       CGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACC                                      >  SRR4302534.5301209/1‑94 (MQ=60)

                                                        GCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCG                                     <  SRR4302534.3050116/94‑1 (MQ=60)

                                                        GCCAGCGCCCGATCGCGATGTACGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCG                                     >  SRR4302534.2667974/1‑94 (MQ=60)

                                                         CCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGC                                    <  SRR4302534.5373889/94‑1 (MQ=60)

                                                          CAGCGCCCGATCGCGATGTCCGCGTCTGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCG                                   <  SRR4302534.1287885/94‑1 (MQ=60)

                                                          CAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCG                                   <  SRR4302534.4242107/94‑1 (MQ=60)

                                                           AGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGG                                  >  SRR4302534.2444358/1‑94 (MQ=60)

                                                           AGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGG                                  <  SRR4302534.3922701/94‑1 (MQ=60)

                                                             CGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCT                                >  SRR4302534.6033971/1‑94 (MQ=60)

                                                             CGCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCT                                <  SRR4302534.6539875/94‑1 (MQ=60)

                                                              GCCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTT                               >  SRR4302534.6364195/1‑94 (MQ=60)

                                                               CCCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTC                              >  SRR4302534.2557225/1‑94 (MQ=60)

                                                                CCGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCC                             >  SRR4302534.6008095/1‑94 (MQ=60)

                                                                 CGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAATGGCTTCCACCGCGGCTTCCG                            <  SRR4302534.2316967/94‑1 (MQ=60)

                                                                 CGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCG                            >  SRR4302534.2353433/1‑94 (MQ=60)

                                                                 CGATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCG                            <  SRR4302534.6017559/94‑1 (MQ=60)

                                                                  GATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGC                           <  SRR4302534.5020376/94‑1 (MQ=60)

                                                                   ATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCC                          >  SRR4302534.5458099/1‑94 (MQ=60)

                                                                   ATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCC                          >  SRR4302534.6347706/1‑94 (MQ=60)

                                                                   ATCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCC                          <  SRR4302534.5039527/94‑1 (MQ=60)

                                                                    TCGCGATGTCCGCGTCCGTCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCT                         <  SRR4302534.824451/94‑1 (MQ=60)

                                                                    TCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCT                         <  SRR4302534.1885219/94‑1 (MQ=60)

                                                                    TCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCT                         >  SRR4302534.4015789/1‑94 (MQ=60)

                                                                    TCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCT                         <  SRR4302534.4316891/94‑1 (MQ=60)

                                                                    TCGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCG                         <  SRR4302534.3407902/94‑1 (MQ=60)

                                                                     CGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTG                        >  SRR4302534.3309167/1‑94 (MQ=60)

                                                                     CGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTG                        <  SRR4302534.665852/94‑1 (MQ=60)

                                                                     CGCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTG                        <  SRR4302534.5012778/94‑1 (MQ=60)

                                                                      GCGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGT                       >  SRR4302534.5768764/1‑94 (MQ=60)

                                                                       TGATGTCCCCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGaccgtc                      >  SRR4302534.172543/1‑88 (MQ=60)

                                                                       CGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTA                      >  SRR4302534.3683841/1‑94 (MQ=60)

                                                                       CGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTA                      >  SRR4302534.6354819/1‑94 (MQ=60)

                                                                       CGATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTCGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTA                      >  SRR4302534.631993/1‑94 (MQ=60)

                                                                        GATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAA                     >  SRR4302534.1457540/1‑94 (MQ=60)

                                                                        GATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAA                     >  SRR4302534.4337103/1‑94 (MQ=60)

                                                                         ATGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAA                    >  SRR4302534.289805/1‑94 (MQ=60)

                                                                          TGTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAG                   >  SRR4302534.5205370/1‑94 (MQ=60)

                                                                           GTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGC                  <  SRR4302534.4076841/94‑1 (MQ=60)

                                                                           GTCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCCGCCTCCGCCTGTAAAGC                  >  SRR4302534.3681464/1‑94 (MQ=60)

                                                                            TCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGCT                 <  SRR4302534.6198365/94‑1 (MQ=60)

                                                                            TCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGCT                 <  SRR4302534.6280362/94‑1 (MQ=60)

                                                                            TCCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGCT                 <  SRR4302534.919908/94‑1 (MQ=60)

                                                                             CCGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGCTC                >  SRR4302534.3949065/1‑94 (MQ=60)

                                                                              CGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTACAGCTCG               >  SRR4302534.1825358/1‑94 (MQ=60)

                                                                              CGCGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGCTCG               >  SRR4302534.984137/1‑94 (MQ=60)

                                                                                CGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGGTTCCGCCTCTAAAGCTCGAC             >  SRR4302534.1051529/1‑94 (MQ=60)

                                                                                CGTCCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGCTCGCC             >  SRR4302534.493226/1‑94 (MQ=60)

                                                                                   CCGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGCTCGCCCAA          >  SRR4302534.6431951/1‑94 (MQ=60)

                                                                                    CGGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTCAAGCTCGCCCAAG         >  SRR4302534.3194546/1‑94 (MQ=60)

                                                                                     GGCGTCGCCCAGATCATACTCGAGTGTCACTGTCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGCTCGCCCAAGG        <  SRR4302534.3114356/94‑1 (MQ=60)

                                                                                     GGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGCTCGCCCAAGG        >  SRR4302534.5183189/1‑94 (MQ=60)

                                                                                     GGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGCTCGCCCAAGG        >  SRR4302534.4578069/1‑94 (MQ=60)

                                                                                     CGCGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGCTCGCCCAAGG        <  SRR4302534.1006504/94‑1 (MQ=60)

                                                                                       CGTCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGCTCGCCCAAGGTT      >  SRR4302534.6022515/1‑94 (MQ=60)

                                                                                         TCGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGCTCGCCCAAGGTTGG    >  SRR4302534.5332260/1‑94 (MQ=60)

                                                                                          CGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGCTCGCCCAAGGTTGGT   >  SRR4302534.209481/1‑94 (MQ=60)

                                                                                          CGCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGCTCGCCCAAGGTTGGT   <  SRR4302534.1778768/94‑1 (MQ=60)

                                                                                           GCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGCTCGCCCCAGGTTGGGA  >  SRR4302534.509590/1‑94 (MQ=60)

                                                                                           GCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGCTCGCCCAAGGTTGGTA  >  SRR4302534.5269598/1‑94 (MQ=60)

                                                                                           GCCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGCTCGCCCAAGGTTGGTA  <  SRR4302534.876028/94‑1 (MQ=60)

CATTGTTATTGACGATACAGGCATCTTCCGCCCCCGTAATACGGCACAGCAGCTGCGCCAGCGCCCGATCGCGATGTCCGCGTCCGGCGTCGTCCAGATCATACTCGAGGGTCACTGGCGAACGCATAGCCTGCGCAACGGCTTCCACCGCGGCTTCCGCCTGTAAAGCTCGCCCAAGGTTGGTA  >  NC_000913/3758417‑3758601

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`