Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,782,476	A→G	V56A (GTT→GCT)	yibN ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,782,476	0	A	G	100.0%	801.6 / NA	230	V56A (GTT→GCT)	yibN	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (123/107); total (123/107)

Only 100 of 238 total aligned reads displayed.

ACATTGTTGGCTTTGATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAACCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAACGTAGTCACA  >  NC_000913/3782386‑3782565

aCATTGTTGGCTTTGATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGcc                                                                                         >  1:4380856/1‑93 (MQ=255)

aCATTGTTGGCTTTGATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGcc                                                                                         >  1:3299636/1‑93 (MQ=255)

aCATTGTTGGCTTTGATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGcc                                                                                         <  2:5795147/93‑1 (MQ=255)

aCATTGTTGGCTTTGATTTCGCGCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGcc                                                                                         <  1:1926433/93‑1 (MQ=255)

   ttgttgGCTTTGATTTCGCTCGGCAACAGATTAATAGACCCTGCGATATGGCCTTCACGGAAGTCATCACGCTGACGTAAATCCACAGCcaca                                                                                      <  1:6094422/93‑1 (MQ=255)

        tgCTTTGATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGtc                                                                                 <  1:3213551/92‑1 (MQ=255)

        ggCTTTGATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGtc                                                                                 <  2:3731239/93‑1 (MQ=255)

        ggCTTTGATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGtc                                                                                 <  1:2868272/93‑1 (MQ=255)

         gCTTTGATTTCGCCCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGtct                                                                                <  2:4320698/93‑1 (MQ=255)

           tttGATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGtcttc                                                                              <  1:887007/93‑1 (MQ=255)

           tttGATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGtcttc                                                                              >  2:2726454/1‑93 (MQ=255)

           tttGATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACAGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGtcttc                                                                              >  1:1738368/1‑93 (MQ=255)

            ttGATTTCGCTCGGCAACATATTAATAGACCCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGtcttct                                                                             <  1:2374840/93‑1 (MQ=255)

            ttGATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGtcttct                                                                             <  2:3365942/93‑1 (MQ=255)

              gATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCttt                                                                           <  2:3432202/93‑1 (MQ=255)

              gATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCttt                                                                           <  1:108764/93‑1 (MQ=255)

                 ttCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTttgtt                                                                        >  2:4719346/1‑93 (MQ=255)

                    gCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGAt                                                                     >  2:622822/1‑93 (MQ=255)

                     cTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATc                                                                    <  1:4628706/93‑1 (MQ=255)

                      tCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCa                                                                   >  2:543341/1‑93 (MQ=255)

                      tCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCa                                                                   <  2:2363084/93‑1 (MQ=255)

                        ggCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGa                                                                 <  1:6161234/93‑1 (MQ=255)

                         gCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGAc                                                                <  1:5388364/93‑1 (MQ=255)

                          cAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGAcg                                                               >  2:1563220/1‑93 (MQ=255)

                          cAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGAcg                                                               <  2:361221/93‑1 (MQ=255)

                          cAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGAcg                                                               <  2:5155659/93‑1 (MQ=255)

                            aCAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGAcgcg                                                             >  2:1364180/1‑93 (MQ=255)

                            aCAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGAcgcg                                                             >  1:5723406/1‑93 (MQ=255)

                            aCAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGAcgcg                                                             >  1:4345519/1‑93 (MQ=255)

                            aCAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGAcgcg                                                             >  2:3306575/1‑93 (MQ=255)

                            aCAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGAcgcg                                                             >  1:2134609/1‑93 (MQ=255)

                             cAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGt                                                            >  2:1989358/1‑93 (MQ=255)

                              aGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTa                                                           <  2:1198089/93‑1 (MQ=255)

                              aGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTa                                                           >  1:2594356/1‑93 (MQ=255)

                               gATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAg                                                          >  2:1844749/1‑93 (MQ=255)

                               gATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAg                                                          <  1:1318252/93‑1 (MQ=255)

                               gATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAg                                                          >  2:3271300/1‑93 (MQ=255)

                                 ttAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCt                                                        >  1:5783497/1‑93 (MQ=255)

                                  tAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCNTTGTTGATCAGACNCNTAGNtt                                                       >  2:1165757/1‑93 (MQ=255)

                                   aaTAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTc                                                      <  1:2682903/93‑1 (MQ=255)

                                   aaTAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTc                                                      >  1:1861358/1‑93 (MQ=255)

                                   aaTAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTc                                                      >  1:138770/1‑93 (MQ=255)

                                   aaTAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTc                                                      >  1:4263648/1‑93 (MQ=255)

                                    aTAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTca                                                     >  1:4645264/1‑93 (MQ=255)

                                        aaCCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTcaccac                                                 >  2:4441866/1‑93 (MQ=255)

                                          ccTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGa                                               <  1:1355525/93‑1 (MQ=255)

                                           cTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAg                                              <  2:2868921/93‑1 (MQ=255)

                                           cTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAg                                              <  1:1002678/93‑1 (MQ=255)

                                            tGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGt                                             >  1:5965774/1‑93 (MQ=255)

                                            tGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGt                                             >  1:3396308/1‑93 (MQ=255)

                                            tGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGt                                             >  1:1036938/1‑93 (MQ=255)

                                            tGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGAAGCGTAGCTTCACAACGAGt                                             >  2:5101049/1‑93 (MQ=255)

                                              cGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTaa                                           <  2:4636616/93‑1 (MQ=255)

                                              cGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTaa                                           <  1:5545444/93‑1 (MQ=255)

                                               gATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAAt                                          <  1:3699822/93‑1 (MQ=255)

                                                atatGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATc                                         <  2:5697489/93‑1 (MQ=255)

                                                atatGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATc                                         >  2:812130/1‑93 (MQ=255)

                                                   tGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCAcc                                      >  1:3773557/1‑93 (MQ=255)

                                                     gCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCtt                                    >  1:3584061/1‑93 (MQ=255)

                                                      ccTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTc                                   <  2:4370993/93‑1 (MQ=255)

                                                      ccTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTc                                   <  2:1575742/93‑1 (MQ=255)

                                                        tttACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCAc                                 >  2:3195972/1‑93 (MQ=255)

                                                         ttACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACt                                >  1:2556640/1‑93 (MQ=255)

                                                          tACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACtt                               >  1:4748903/1‑93 (MQ=255)

                                                          tACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACtt                               >  1:4878005/1‑93 (MQ=255)

                                                           aCGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACttt                              <  2:2062542/93‑1 (MQ=255)

                                                              gAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGa                           >  2:5834513/1‑93 (MQ=255)

                                                               aaGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAg                          >  1:642248/1‑93 (MQ=255)

                                                               aaGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAg                          >  1:4553689/1‑93 (MQ=255)

                                                                aGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAgg                         >  2:5284229/1‑93 (MQ=255)

                                                                aGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAgg                         >  2:1801200/1‑93 (MQ=255)

                                                                aGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAgg                         <  2:4221473/93‑1 (MQ=255)

                                                                aGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAgg                         >  2:4931503/1‑93 (MQ=255)

                                                                 gTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCAGCACGAGTAATCACCTTCACTTTCGAGGt                        >  2:5879249/1‑93 (MQ=255)

                                                                  tcatcaCGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTc                       >  1:5085682/1‑93 (MQ=255)

                                                                  tcatcaCGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTc                       <  2:4764575/93‑1 (MQ=255)

                                                                   catcaCGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCa                      <  1:5527024/93‑1 (MQ=255)

                                                                    atcaCGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAg                     <  2:5383063/93‑1 (MQ=255)

                                                                    atcaCGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAg                     <  1:3253602/93‑1 (MQ=255)

                                                                      caCGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGc                   >  2:1854717/1‑93 (MQ=255)

                                                                       aCGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGct                  >  1:4428117/1‑93 (MQ=255)

                                                                       aCGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGct                  <  1:5363976/93‑1 (MQ=255)

                                                                          cTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCtt               <  1:3908989/93‑1 (MQ=255)

                                                                           tGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTa              <  2:2447179/93‑1 (MQ=255)

                                                                           tGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTa              <  2:4540383/93‑1 (MQ=255)

                                                                            gACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTaa             >  1:983196/1‑93 (MQ=255)

                                                                               gTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAACg          >  2:4040663/1‑93 (MQ=255)

                                                                                tAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAACGt         <  2:4170935/93‑1 (MQ=255)

                                                                                tAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAACGt         >  1:3375674/1‑93 (MQ=255)

                                                                                tAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAACGt         <  1:2811002/93‑1 (MQ=255)

                                                                                tAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAACGt         <  2:2245558/93‑1 (MQ=255)

                                                                                 aaaaCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAACGTa        <  2:3844340/93‑1 (MQ=255)

                                                                                  aaTCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAACGTAg       >  1:5014356/1‑93 (MQ=255)

                                                                                  aaTCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAACGTAg       >  1:2272603/1‑93 (MQ=255)

                                                                                    tCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAACGTAGTc     >  1:4023970/1‑93 (MQ=255)

                                                                                    tCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAACGTAGTc     <  1:2972250/93‑1 (MQ=255)

                                                                                     ccacagccacagCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAACGTAGTca    >  1:4467937/1‑93 (MQ=255)

                                                                                      cacagccacagcGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAACGTAGTcac   >  2:3114393/1‑93 (MQ=255)

                                                                                      cacagccacagcGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAACGTAGTcac   >  1:1652458/1‑93 (MQ=255)

                                                                                       acaGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAACGTAGTcaca  >  2:3740148/1‑93 (MQ=255)

ACATTGTTGGCTTTGATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAACCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAACGTAGTCACA  >  NC_000913/3782386‑3782565

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCAACATTGTTGGCTTTGATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAACCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAACGTAGTCACAAGAA  >  NC_000913/3782383‑3782569

CCAACATTGTTGGCTTTGATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAG                                                                                               >  SRR4302534.271766/1‑94 (MQ=60)

CCAACATTGTTGGCTTTGATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAG                                                                                               <  SRR4302534.878382/94‑1 (MQ=60)

  AACATTGTTGGCTTTGATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCC                                                                                             <  SRR4302534.5929432/94‑1 (MQ=60)

  AACATTGTTGGCTTTGATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCC                                                                                             >  SRR4302534.2644362/1‑94 (MQ=60)

  AACATTGTTGGCTTTGATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCC                                                                                             >  SRR4302534.3387702/1‑94 (MQ=60)

  AACATTGTTGGCTTTGATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCC                                                                                             >  SRR4302534.4498943/1‑94 (MQ=60)

   ACATTGTTGGCTTTGATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCA                                                                                            >  SRR4302534.2803811/1‑94 (MQ=60)

   ACATTGTTGGCTTTGATTTCGCGCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCA                                                                                            <  SRR4302534.1976790/94‑1 (MQ=60)

    CATTGTTGGCTTTGATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCAC                                                                                           >  SRR4302534.3525364/1‑94 (MQ=60)

    CATTGTTGGCTTTGATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCAC                                                                                           <  SRR4302534.6374119/94‑1 (MQ=60)

     ATTGTTGGCTTTGATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACA                                                                                          >  SRR4302534.717129/1‑94 (MQ=60)

     ATTGTTGGCTTTGATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACA                                                                                          >  SRR4302534.6132505/1‑94 (MQ=60)

      TTGTTGGCTTTGATTTCGCTCGGCAACAGATTAATAGACCCTGCGATATGGCCTTCACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAG                                                                                         <  SRR4302534.6260149/94‑1 (MQ=60)

      TTGTTGGCTTTGATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAG                                                                                         <  SRR4302534.5313888/94‑1 (MQ=60)

       TGTTGGCTTTGATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGC                                                                                        <  SRR4302534.103301/94‑1 (MQ=60)

           TGCTTTGATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCT                                                                                    <  SRR4302534.3298830/94‑1 (MQ=60)

           GGCTTTGATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCT                                                                                    >  SRR4302534.1374620/1‑94 (MQ=60)

           GGCTTTGATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCT                                                                                    <  SRR4302534.2943593/94‑1 (MQ=60)

            GCTTTGATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTT                                                                                   >  SRR4302534.3914919/1‑94 (MQ=60)

             CTTTGATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTC                                                                                  >  SRR4302534.4525464/1‑94 (MQ=60)

             CTTTGATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTC                                                                                  <  SRR4302534.2665345/94‑1 (MQ=60)

             CTTTGATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACAGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTC                                                                                  >  SRR4302534.1783499/1‑94 (MQ=60)

              TTTGATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCT                                                                                 <  SRR4302534.909470/94‑1 (MQ=60)

               TTGATTTCGCTCGGCAACATATTAATAGACCCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTT                                                                                <  SRR4302534.2437907/94‑1 (MQ=60)

                 GATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTG                                                                              <  SRR4302534.417166/94‑1 (MQ=60)

                 GATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTG                                                                              <  SRR4302534.111667/94‑1 (MQ=60)

                   TTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTT                                                                            <  SRR4302534.2028465/94‑1 (MQ=60)

                   TTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGACACAGCGTCTTCTTTGTT                                                                            >  SRR4302534.34821/1‑94 (MQ=60)

                    TTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTG                                                                           <  SRR4302534.1183714/94‑1 (MQ=60)

                    TTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTG                                                                           >  SRR4302534.1189613/1‑94 (MQ=60)

                    TTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTG                                                                           <  SRR4302534.3200292/94‑1 (MQ=60)

                      CGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGAT                                                                         <  SRR4302534.5613460/94‑1 (MQ=60)

                      CGCTCGGCAACAAATTAATATAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGAT                                                                         <  SRR4302534.4454158/94‑1 (MQ=60)

                        CTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCA                                                                       >  SRR4302534.5149026/1‑94 (MQ=60)

                        CTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCA                                                                       >  SRR4302534.5677518/1‑94 (MQ=60)

                        CTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCA                                                                       <  SRR4302534.4754303/94‑1 (MQ=60)

                        CTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCA                                                                       >  SRR4302534.3305859/1‑94 (MQ=60)

                         TCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAG                                                                      >  SRR4302534.3144438/1‑94 (MQ=60)

                           GGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGAC                                                                    <  SRR4302534.6328821/94‑1 (MQ=60)

                           GGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGAC                                                                    <  SRR4302534.5906762/94‑1 (MQ=60)

                            GCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACG                                                                   <  SRR4302534.5533490/94‑1 (MQ=60)

                             CAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGC                                                                  <  SRR4302534.3433513/94‑1 (MQ=60)

                              AACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCG                                                                 >  SRR4302534.4462873/1‑94 (MQ=60)

                              AACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCG                                                                 >  SRR4302534.5878451/1‑94 (MQ=60)

                              AACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCG                                                                 >  SRR4302534.4004070/1‑94 (MQ=60)

                              AACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCG                                                                 >  SRR4302534.2190890/1‑94 (MQ=60)

                                CAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTA                                                               >  SRR4302534.2232914/1‑94 (MQ=60)

                                CAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTA                                                               >  SRR4302534.2663031/1‑94 (MQ=60)

                                 AGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAG                                                              >  SRR4302534.1882999/1‑94 (MQ=60)

                                  GATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGC                                                             <  SRR4302534.1353008/94‑1 (MQ=60)

                                  GATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGC                                                             >  SRR4302534.5518591/1‑94 (MQ=60)

                                   ATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCT                                                            <  SRR4302534.3528591/94‑1 (MQ=60)

                                   ATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCT                                                            <  SRR4302534.4984189/94‑1 (MQ=60)

                                   ATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCT                                                            <  SRR4302534.2457447/94‑1 (MQ=60)

                                   ATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCT                                                            >  SRR4302534.5940376/1‑94 (MQ=60)

                                     TAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTC                                                          >  SRR4302534.1909801/1‑94 (MQ=60)

                                     TAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTC                                                          >  SRR4302534.142399/1‑94 (MQ=60)

                                     TAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTC                                                          >  SRR4302534.4378808/1‑94 (MQ=60)

                                      TATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCA                                                         >  SRR4302534.2929804/1‑94 (MQ=60)

                                      AATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCA                                                         >  SRR4302534.4771365/1‑94 (MQ=60)

                                      AATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCA                                                         <  SRR4302534.4781777/94‑1 (MQ=60)

                                      AATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCA                                                         <  SRR4302534.2753815/94‑1 (MQ=60)

                                      AATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCA                                                         >  SRR4302534.6564107/1‑94 (MQ=60)

                                       ATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCAC                                                        >  SRR4302534.4477779/1‑94 (MQ=60)

                                        TAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACC                                                       >  SRR4302534.3706039/1‑94 (MQ=60)

                                         AGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCA                                                      >  SRR4302534.521089/1‑94 (MQ=60)

                                         AGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCA                                                      >  SRR4302534.5559742/1‑94 (MQ=60)

                                           AACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACG                                                    >  SRR4302534.1740241/1‑94 (MQ=60)

                                           AACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGCTGATCAGACGCGTAGCcgcacgaca                                                    >  SRR4302534.2166946/1‑85 (MQ=60)

                                             CCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAG                                                  >  SRR4302534.4115811/1‑94 (MQ=60)

                                             CCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAG                                                  <  SRR4302534.1391250/94‑1 (MQ=60)

                                              CTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGT                                                 >  SRR4302534.3487449/1‑94 (MQ=60)

                                              CTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGT                                                 >  SRR4302534.6127778/1‑94 (MQ=60)

                                              CTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGT                                                 >  SRR4302534.1063701/1‑94 (MQ=60)

                                              CTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGT                                                 <  SRR4302534.1028391/94‑1 (MQ=60)

                                                 CGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAAT                                              <  SRR4302534.5695136/94‑1 (MQ=60)

                                                  GATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATC                                             <  SRR4302534.3799286/94‑1 (MQ=60)

                                                    TATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCAC                                           <  SRR4302534.3445978/94‑1 (MQ=60)

                                                    TATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCAC                                           <  SRR4302534.3869360/94‑1 (MQ=60)

                                                     ATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACC                                          >  SRR4302534.3874879/1‑94 (MQ=60)

                                                     ATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACC                                          >  SRR4302534.622880/1‑94 (MQ=60)

                                                       GGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTT                                        >  SRR4302534.2866476/1‑94 (MQ=60)

                                                       GGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTT                                        >  SRR4302534.3680473/1‑94 (MQ=60)

                                                       GGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTT                                        >  SRR4302534.6110762/1‑94 (MQ=60)

                                                        GCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTC                                       <  SRR4302534.2641538/94‑1 (MQ=60)

                                                        GCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTC                                       >  SRR4302534.4573110/1‑94 (MQ=60)

                                                           TTTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACT                                    >  SRR4302534.2624409/1‑94 (MQ=60)

                                                            TTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTT                                   >  SRR4302534.5010307/1‑94 (MQ=60)

                                                            TTACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTT                                   >  SRR4302534.4877808/1‑94 (MQ=60)

                                                            TTACGGAACTCATCACGCTGACTTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCGCCTTCACTT                                   <  SRR4302534.3371395/94‑1 (MQ=60)

                                                             TACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTA                                  <  SRR4302534.4531083/94‑1 (MQ=60)

                                                              ACGGAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTC                                 <  SRR4302534.5799057/94‑1 (MQ=60)

                                                                 GAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAG                              >  SRR4302534.4677134/1‑94 (MQ=60)

                                                                 GAAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAG                              >  SRR4302534.657836/1‑94 (MQ=60)

                                                                  AAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGG                             >  SRR4302534.4757172/1‑94 (MQ=60)

                                                                  AAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGG                             >  SRR4302534.4752087/1‑94 (MQ=60)

                                                                  AAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGG                             <  SRR4302534.2347714/94‑1 (MQ=60)

                                                                  AAGTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGG                             >  SRR4302534.1597292/1‑94 (MQ=60)

                                                                    GTCATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTC                           >  SRR4302534.5222949/1‑94 (MQ=60)

                                                                      CATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAG                         <  SRR4302534.5676187/94‑1 (MQ=60)

                                                                      CATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAG                         >  SRR4302534.4815703/1‑94 (MQ=60)

                                                                       ATCACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGG                        <  SRR4302534.3340259/94‑1 (MQ=60)

                                                                         CACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCT                      >  SRR4302534.1877213/1‑94 (MQ=60)

                                                                         CACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCT                      >  SRR4302534.4547685/1‑94 (MQ=60)

                                                                         CACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCT                      <  SRR4302534.139836/94‑1 (MQ=60)

                                                                          ACGCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTC                     <  SRR4302534.5508538/94‑1 (MQ=60)

                                                                            GCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTT                   >  SRR4302534.5801057/1‑94 (MQ=60)

                                                                            GCTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTT                   <  SRR4302534.94079/94‑1 (MQ=60)

                                                                             CTGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTA                  <  SRR4302534.4013815/94‑1 (MQ=60)

                                                                              TGACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAA                 >  SRR4302534.1008298/1‑94 (MQ=60)

                                                                               GACGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAA                >  SRR4302534.193627/1‑94 (MQ=60)

                                                                                 CGTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAACG              <  SRR4302534.1106309/94‑1 (MQ=60)

                                                                                  GTAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAACGT             >  SRR4302534.3466144/1‑94 (MQ=60)

                                                                                   TAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAACGTA            <  SRR4302534.2884909/94‑1 (MQ=60)

                                                                                   TAAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAACGTA            >  SRR4302534.5161915/1‑94 (MQ=60)

                                                                                    AAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAACGTAG           >  SRR4302534.5149870/1‑94 (MQ=60)

                                                                                    AAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAACGTAG           >  SRR4302534.2332867/1‑94 (MQ=60)

                                                                                    AAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAACGTAG           >  SRR4302534.2277373/1‑94 (MQ=60)

                                                                                    AAATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAACGTAG           <  SRR4302534.163852/94‑1 (MQ=60)

                                                                                     AATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTACACGTAGT          >  SRR4302534.6283096/1‑94 (MQ=60)

                                                                                     AATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAACGTAGT          >  SRR4302534.2994784/1‑94 (MQ=60)

                                                                                      ATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAACGTAGTC         >  SRR4302534.4258318/1‑94 (MQ=60)

                                                                                      ATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAACGTAGTC         >  SRR4302534.4131868/1‑94 (MQ=60)

                                                                                      ATCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAACGTAGTC         <  SRR4302534.4677807/94‑1 (MQ=60)

                                                                                       TCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAACGTAGTCA        >  SRR4302534.4588760/1‑94 (MQ=60)

                                                                                       TCCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAACGTAGTCA        <  SRR4302534.3050072/94‑1 (MQ=60)

                                                                                        CCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAACGTAGTCAC       <  SRR4302534.4659948/94‑1 (MQ=60)

                                                                                        CCACAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAACGTAGTCAC       >  SRR4302534.1695525/1‑94 (MQ=60)

                                                                                           CAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAACGTAGTCACAAG    >  SRR4302534.3574623/1‑94 (MQ=60)

                                                                                           CAGCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAACGTAGTCACAAG    <  SRR4302534.2992709/94‑1 (MQ=60)

                                                                                             GCCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAACGTAGTCACAAGAA  <  SRR4302534.3055053/94‑1 (MQ=60)

CCAACATTGTTGGCTTTGATTTCGCTCGGCAACAGATTAATAGAACCTGCGATATGGCCTTTACGGAAGTCATCACGCTGACGTAAATCCACAACCACAGCGTCTTCTTTGTTGATCAGACGCGTAGCTTCACCACGAGTAATCACCTTCACTTTCGAGGTCAGGCTCTTAAACGTAGTCACAAGAA  >  NC_000913/3782383‑3782569

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 9 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`