Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,807,262 |
A→G |
S366G (AGC→GGC) |
kdtA → |
3‑deoxy‑D‑manno‑octulosonic‑acid transferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,807,262 | 0 | A | G | 99.6%
| 778.1
/ NA
| 226 | S366G (AGC→GGC) | kdtA | 3‑deoxy‑D‑manno‑octulosonic‑acid transferase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (115/110); minor base T (0/1); total (115/111) |
| Fisher's exact test for biased strand distribution p-value = 4.91e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 244 total aligned reads displayed.
CCGCTGGAAGCTGCCGCACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAAGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTAGTTTCTATGGC > NC_000913/3807172‑3807351
|
ccGCTGGAAGCTGCCGCACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCaggcaggc > 2:5668549/1‑93 (MQ=255)
ccGCTGGAAGCTGCCGCACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCaggcaggc < 1:5939346/93‑1 (MQ=255)
cGCTGGAAGCTGCCGCACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCg < 2:6335944/93‑1 (MQ=255)
gCTGGAAGCTGCCGCACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCgg > 2:1136342/1‑93 (MQ=255)
gCTGGAAGCTGCCGCACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCgg > 1:3702838/1‑93 (MQ=255)
ggAAGCTGCCGCACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCt < 2:570721/93‑1 (MQ=255)
ggAAGCTGCCGCACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCt > 2:2708224/1‑93 (MQ=255)
ggAAGCTGCCGCACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCt < 2:2614252/93‑1 (MQ=255)
ggAAGCTGCCGCACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCt < 2:2383425/93‑1 (MQ=255)
aaGCTGCCGCACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGa < 1:68034/93‑1 (MQ=255)
aGCTGCCGCACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGAt < 2:19052/93‑1 (MQ=255)
aGCTGCCGCACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGAt < 2:1535422/93‑1 (MQ=255)
gCTGCCGCACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGAtt > 2:4861160/1‑93 (MQ=255)
gCCGCACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGAttacc > 2:5459276/1‑93 (MQ=255)
gCCGCACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGAttacc < 2:2984036/93‑1 (MQ=255)
gCCGCACACGCTATTCCGGAATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGAttacc > 1:6306520/1‑93 (MQ=255)
cGCACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGAttaccgt < 2:388182/93‑1 (MQ=255)
gCACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTT‑‑GCGCGGCTGGAGCAGGCAGGCGGGCTGAttaccgttac > 1:4951637/1‑93 (MQ=255)
cacaCGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGAttaccgtta < 1:3654443/93‑1 (MQ=255)
acacGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGGTGAttaccgttac > 1:3537945/1‑93 (MQ=255)
acacGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGAttaccgttac > 1:1168884/1‑93 (MQ=255)
acacGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGAttaccgttac < 1:828658/93‑1 (MQ=255)
cacGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGAttaccgttacc > 1:2970501/1‑93 (MQ=255)
cacGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGAttaccgttacc > 2:5928801/1‑93 (MQ=255)
cacGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGAttaccgttacc < 1:1565632/93‑1 (MQ=255)
cacGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGAttacccttacc > 1:4616570/1‑93 (MQ=255)
acGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGAttaccgttaccg > 1:5990912/1‑93 (MQ=255)
cGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGa < 1:3159981/93‑1 (MQ=255)
gCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGAt > 2:314069/1‑93 (MQ=255)
tATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGc < 1:2018261/93‑1 (MQ=255)
tATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGc < 1:3118688/93‑1 (MQ=255)
ttCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCa > 1:323804/1‑93 (MQ=255)
ggTATTGATGGGGCCGCATACTTTTATCTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGACTGATTACCGTTACCGATGCCACTAc < 1:4264687/93‑1 (MQ=255)
tATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGc < 1:1793323/93‑1 (MQ=255)
aTTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCt < 1:2827465/93‑1 (MQ=255)
aTTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCt < 2:2050638/93‑1 (MQ=255)
ttGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCtt < 1:6053179/93‑1 (MQ=255)
gATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGc > 1:1579130/1‑93 (MQ=255)
tGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCaa > 1:2542082/1‑93 (MQ=255)
gggCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCaaaa > 2:4979507/1‑93 (MQ=255)
gggCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCaaaa > 2:106878/1‑93 (MQ=255)
gggCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCaaaa > 1:1329548/1‑93 (MQ=255)
ggCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGTCTGATTACCGTTACCGATGCCACTACGCTTGCAAAag < 2:3931085/93‑1 (MQ=255)
gCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAaga < 2:4162840/93‑1 (MQ=255)
ccGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAagag > 2:4518343/1‑93 (MQ=255)
ccGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAagag < 1:5226046/93‑1 (MQ=255)
gCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTGCCGATGCCACTACGCTTGCAAAAGAGGt < 2:428435/93‑1 (MQ=255)
gCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGt < 1:414297/93‑1 (MQ=255)
gCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGt > 1:5409259/1‑93 (MQ=255)
aTACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGttt > 1:5716472/1‑93 (MQ=255)
aTACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGttt > 2:3185967/1‑93 (MQ=255)
tACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTc > 1:1479179/1‑93 (MQ=255)
tACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTc < 1:5528690/93‑1 (MQ=255)
ttttAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCctc > 2:2533052/1‑93 (MQ=255)
ttttAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCctc > 1:381111/1‑93 (MQ=255)
ttttAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCctc < 1:2255664/93‑1 (MQ=255)
tttAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCctct > 2:2667147/1‑93 (MQ=255)
tttAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCctct < 1:1711485/93‑1 (MQ=255)
ttAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCtt < 2:3366950/93‑1 (MQ=255)
aCTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTAc > 1:6016561/1‑93 (MQ=255)
cTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACt > 2:3990929/1‑93 (MQ=255)
ttAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTNTTTACTCa > 1:3752164/1‑93 (MQ=255)
ttAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCa > 1:5817093/1‑93 (MQ=255)
tAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCAc > 1:2411122/1‑93 (MQ=255)
aaaGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCAcc < 2:2280411/93‑1 (MQ=255)
aaGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCg > 1:648677/1‑93 (MQ=255)
aaGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCg < 2:549113/93‑1 (MQ=255)
aaGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCg > 2:3868717/1‑93 (MQ=255)
aGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGa < 2:4058435/93‑1 (MQ=255)
aGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGa > 2:142813/1‑93 (MQ=255)
aGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGa > 2:4714005/1‑93 (MQ=255)
gACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGAc < 2:6176623/93‑1 (MQ=255)
gACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGAc > 2:2893272/1‑93 (MQ=255)
gACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGAc > 1:2350098/1‑93 (MQ=255)
gACATGTGCGCGCGGCTGGAGCAGGCAGGCGGGCTAATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGATTTCCTCTTTACTCACCGAc < 1:5036396/93‑1 (MQ=255)
cATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGc < 1:3294512/93‑1 (MQ=255)
cATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGc > 1:4069705/1‑93 (MQ=255)
tttGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCg > 2:1705871/1‑93 (MQ=255)
ttGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGa < 1:4058953/93‑1 (MQ=255)
tGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGAt < 2:4840933/93‑1 (MQ=255)
tGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGGTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGAt > 1:4984039/1‑93 (MQ=255)
cgcgcgGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTa < 2:1355492/93‑1 (MQ=255)
gcgcgGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTAc < 2:5943715/93‑1 (MQ=255)
cgcgGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTAcc < 1:5139442/93‑1 (MQ=255)
cgcgGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTAcc < 1:1335895/93‑1 (MQ=255)
cgcgGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGGTTCCTCTTTACTCACCGACGCCGATTAcc > 1:1913817/1‑93 (MQ=255)
gcgGCTGGAGCAGGCAGGCGGTCTTATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCg < 1:4504018/93‑1 (MQ=255)
ggCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTa > 2:3693822/1‑93 (MQ=255)
gCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTAg > 1:5840402/1‑93 (MQ=255)
cTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTAGt < 1:3353600/93‑1 (MQ=255)
cTGGAGCAGGCAGGCGGCCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACCCCGATTACCGTAGt < 1:5587341/93‑1 (MQ=255)
gAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTAGTTTc > 2:3639892/1‑93 (MQ=255)
gAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTAGTTTc < 2:2807561/93‑1 (MQ=255)
gAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTAGTTTc < 1:145709/93‑1 (MQ=255)
aGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCGTCTTTACTCACCGACGCCGCTTACAGTAGTTTCt > 2:538700/1‑93 (MQ=255)
gcaggcagGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTAGTTTCTa < 1:771637/93‑1 (MQ=255)
gcaggcagGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTAGTTTCTa < 1:2133023/93‑1 (MQ=255)
aggcaggcGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTAGTTTCTATg < 2:2143885/93‑1 (MQ=255)
ggCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTAGTTTCTATgg < 1:4688473/93‑1 (MQ=255)
ggCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTAGTTTCTATgg > 2:5101688/1‑93 (MQ=255)
|
CCGCTGGAAGCTGCCGCACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAAGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTAGTTTCTATGGC > NC_000913/3807172‑3807351
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AATCCGCTGGAAGCTGCCGCACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAAGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTAGTTTCTATGGCCGT > NC_000913/3807169‑3807354
|
AATCCGCTGGAAGCTGCCGCACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAG > SRR4302534.2313403/1‑94 (MQ=60)
ATCCGCTGGAAGCTGCCGCACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGG > SRR4302534.4911/1‑94 (MQ=60)
TCCGCTGGAAGCTGCCGCACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGC < SRR4302534.1611948/94‑1 (MQ=60)
CCGCTGGAAGCTGCCGCACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCG < SRR4302534.6100615/94‑1 (MQ=60)
CCGCTGGAAGCTGCCGCACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCG < SRR4302534.3646285/94‑1 (MQ=60)
CGCTGGAAGCTGCCGCACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGG > SRR4302534.3802378/1‑94 (MQ=60)
CGCTGGAAGCTGCCGCACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGG > SRR4302534.2460979/1‑94 (MQ=60)
GGAAGCTGCCGCACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTG < SRR4302534.1485031/94‑1 (MQ=60)
GGAAGCTGCCGCACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTG < SRR4302534.2328344/94‑1 (MQ=60)
AAGCTGCCGCACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGAT < SRR4302534.69885/94‑1 (MQ=60)
AAGCTGCCGCACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGAT > SRR4302534.3523804/1‑94 (MQ=60)
TGCCGCACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACC < SRR4302534.6139014/94‑1 (MQ=60)
TGCCGCACACGCTATTCCGGAATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACC > SRR4302534.6477048/1‑94 (MQ=60)
CGCACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTT‑‑GCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTAC > SRR4302534.5085757/1‑94 (MQ=60)
CGCACACGCTATTACGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTT < SRR4302534.3798373/94‑1 (MQ=60)
GCACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTA > SRR4302534.5271982/1‑94 (MQ=60)
CACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGGTGATTACCGTTAC > SRR4302534.3633117/1‑94 (MQ=60)
CACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTAC > SRR4302534.1199587/1‑94 (MQ=60)
CACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTAC > SRR4302534.4997007/1‑94 (MQ=60)
CACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTAC > SRR4302534.35837/1‑94 (MQ=60)
CACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTAC < SRR4302534.3752648/94‑1 (MQ=60)
ACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTATCGTTACC > SRR4302534.2815734/1‑94 (MQ=60)
ACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACC > SRR4302534.3048277/1‑94 (MQ=60)
ACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACC < SRR4302534.849513/94‑1 (MQ=60)
ACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACC > SRR4302534.1505037/1‑94 (MQ=60)
ACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCCTTACC > SRR4302534.4741845/1‑94 (MQ=60)
CACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCG > SRR4302534.6153662/1‑94 (MQ=60)
CACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCG < SRR4302534.1606607/94‑1 (MQ=60)
CACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCG > SRR4302534.820990/1‑94 (MQ=60)
ACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGTCTGATTACCGTTACCGA < SRR4302534.6157670/94‑1 (MQ=60)
cggtgttcccGTATTGATGGGGCCGCATACTTTTAAGTTTAAAGACATTTGCGCGCCGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGAT < SRR4302534.1830000/84‑1 (MQ=60)
CGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGAT < SRR4302534.3243234/94‑1 (MQ=60)
TATTCGGGTATTGATGGGGCCGCATTCTTTTAACTTTAAAGACATTTGCGCGCGGCTAGAGCAGGCAGGGGGGCTTATTACCGTTACCGATGCC < SRR4302534.3200701/94‑1 (MQ=60)
TATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCC < SRR4302534.3200700/94‑1 (MQ=60)
TATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCC < SRR4302534.2071075/94‑1 (MQ=60)
ATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCA > SRR4302534.332129/1‑94 (MQ=60)
ATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCA > SRR4302534.4814649/1‑94 (MQ=60)
TCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACT < SRR4302534.5088904/94‑1 (MQ=60)
TCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACT < SRR4302534.123945/94‑1 (MQ=60)
TCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACT < SRR4302534.1744081/94‑1 (MQ=60)
TCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCAAT < SRR4302534.2153355/94‑1 (MQ=60)
CGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTAC < SRR4302534.6083509/94‑1 (MQ=60)
GGTATTGATGGGGCCGCATACTTTTATCTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGACTGATTACCGTTACCGATGCCACTACG < SRR4302534.4379879/94‑1 (MQ=60)
GGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACG < SRR4302534.2195511/94‑1 (MQ=60)
GTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGC < SRR4302534.6005313/94‑1 (MQ=60)
TATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCT < SRR4302534.1839905/94‑1 (MQ=60)
TATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCT < SRR4302534.5955987/94‑1 (MQ=60)
ATTGATGNNGCCGCANACNTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGnnnnnnncnggtaacgatgnnnntnncntt > SRR4302534.2672207/1‑64 (MQ=60)
ATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTT < SRR4302534.2901787/94‑1 (MQ=60)
TTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGTCTGATTACCGTTACCGATGCCACTACGCTTG < SRR4302534.755610/94‑1 (MQ=60)
TTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTG < SRR4302534.6217779/94‑1 (MQ=60)
TGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGC > SRR4302534.4597154/1‑94 (MQ=60)
TGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGC > SRR4302534.1620445/1‑94 (MQ=60)
ATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAA > SRR4302534.2609515/1‑94 (MQ=60)
GGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAA > SRR4302534.5826843/1‑94 (MQ=60)
GGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAA > SRR4302534.1364598/1‑94 (MQ=60)
GGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGA < SRR4302534.1537797/94‑1 (MQ=60)
GGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGA > SRR4302534.3393081/1‑94 (MQ=60)
CCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGG < SRR4302534.5367109/94‑1 (MQ=60)
CCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGG < SRR4302534.5680193/94‑1 (MQ=60)
CGCATACTTTTACCTTTAAAGACATTTTCGCGCGGCTGGAGCAGGCAGGCGGGCTCATTACCGTTACCGATttcttcacgcttgcaaaagcgat > SRR4302534.3900031/1‑71 (MQ=60)
CGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGT > SRR4302534.5554794/1‑94 (MQ=60)
GCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTT < SRR4302534.424874/94‑1 (MQ=60)
CATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTT > SRR4302534.6527533/1‑94 (MQ=60)
CATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTT > SRR4302534.1971463/1‑94 (MQ=60)
CATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTT > SRR4302534.5871354/1‑94 (MQ=60)
ATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTCCCGGTGCCACTACGCTTGGCAAAGAGGTTTC > SRR4302534.619795/1‑94 (MQ=60)
ATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTC > SRR4302534.1518071/1‑94 (MQ=60)
ATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTC < SRR4302534.4079669/94‑1 (MQ=60)
TACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCC < SRR4302534.5677901/94‑1 (MQ=60)
CTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTC < SRR4302534.634008/94‑1 (MQ=60)
CTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTC > SRR4302534.390854/1‑94 (MQ=60)
CTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTC > SRR4302534.2518628/1‑94 (MQ=60)
CTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTC > SRR4302534.3757709/1‑94 (MQ=60)
TTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCT < SRR4302534.2315456/94‑1 (MQ=60)
TTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCT < SRR4302534.4185396/94‑1 (MQ=60)
TTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTT < SRR4302534.1755954/94‑1 (MQ=60)
TTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTT < SRR4302534.5912495/94‑1 (MQ=60)
TGAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCATGCGGGCGGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTT < SRR4302534.3922690/94‑1 (MQ=60)
AACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTAC > SRR4302534.2846885/1‑94 (MQ=60)
AACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTAC > SRR4302534.6180035/1‑94 (MQ=60)
TTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTNTTTACTCA > SRR4302534.3852936/1‑94 (MQ=60)
TTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCA > SRR4302534.5974979/1‑94 (MQ=60)
TTAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCAC > SRR4302534.2475237/1‑94 (MQ=60)
TAAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACC < SRR4302534.5419520/94‑1 (MQ=60)
AAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCG > SRR4302534.2425259/1‑94 (MQ=60)
AAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCG < SRR4302534.961964/94‑1 (MQ=60)
AAAGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCG > SRR4302534.664405/1‑94 (MQ=60)
AGAGATTTGCGCGCGGCTGGAGCAGGCAGGCGGTCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGAC < SRR4302534.3351435/94‑1 (MQ=60)
AGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGAC > SRR4302534.781096/1‑94 (MQ=60)
AGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGAC > SRR4302534.2412468/1‑94 (MQ=60)
AGACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGAC < SRR4302534.5985046/94‑1 (MQ=60)
GACATTTTCGCGCCGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGCTGCCACTACGCGTGCAACAGAGGTTTTCTCTTTACTCACCGACG > SRR4302534.3366821/1‑94 (MQ=60)
GACATTTGCGCGCGGCTGGAGCAGGCAGGCGGTCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACG < SRR4302534.5168255/94‑1 (MQ=60)
GACATGTGCGCGCGGCTGGAGCAGGCAGGCGGGCTAATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGATTTCCTCTTTACTCACCGACG < SRR4302534.5172427/94‑1 (MQ=60)
ACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTGCTCTTTACTCACCGACGC > SRR4302534.1364670/1‑94 (MQ=60)
ACATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGC > SRR4302534.4178906/1‑94 (MQ=60)
CATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCC < SRR4302534.6170449/94‑1 (MQ=60)
CATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCC < SRR4302534.3382396/94‑1 (MQ=60)
ATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCG > SRR4302534.5558367/1‑94 (MQ=60)
ATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCG < SRR4302534.665093/94‑1 (MQ=60)
ATTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACAGACGCCG > SRR4302534.2311254/1‑94 (MQ=60)
TTTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGA > SRR4302534.315732/1‑94 (MQ=60)
TTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGAT > SRR4302534.1863084/1‑94 (MQ=60)
TTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGAT < SRR4302534.4167819/94‑1 (MQ=60)
TTGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGGTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGAT > SRR4302534.5118923/1‑94 (MQ=60)
TGCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATT < SRR4302534.1410749/94‑1 (MQ=60)
GCGCGCGGCTGGAGCAGGCAGGCGTGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTA < SRR4302534.304447/94‑1 (MQ=60)
GCGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCAACTACGCTTGCAAAAGAGGTTTTCTCTTTACTCACCGACGCCGATTA < SRR4302534.5320737/94‑1 (MQ=60)
CGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTAC > SRR4302534.3842115/1‑94 (MQ=60)
CGCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTAC < SRR4302534.4351556/94‑1 (MQ=60)
GCGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGGTTCCTCTTTACTCACCGACGCCGATTACC > SRR4302534.1963770/1‑94 (MQ=60)
CGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCG > SRR4302534.950198/1‑94 (MQ=60)
CGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCG < SRR4302534.1371107/94‑1 (MQ=60)
CGCGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCG < SRR4302534.5278144/94‑1 (MQ=60)
GCGGCTGGAGCAGGCAGGCGGTCTTATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGT < SRR4302534.4625927/94‑1 (MQ=60)
CGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTA > SRR4302534.4475710/1‑94 (MQ=60)
CGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTA > SRR4302534.1715154/1‑94 (MQ=60)
CGGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTA > SRR4302534.1977667/1‑94 (MQ=60)
GGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTAG > SRR4302534.32322/1‑94 (MQ=60)
GGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTAG > SRR4302534.5998948/1‑94 (MQ=60)
GGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTAG > SRR4302534.4167877/1‑94 (MQ=60)
GGCTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTAG > SRR4302534.5356729/1‑94 (MQ=60)
CTGGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTAGTT < SRR4302534.3443415/94‑1 (MQ=60)
CTGGAGCAGGCAGGCGGCCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACCCCGATTACCGTAGTT < SRR4302534.5738356/94‑1 (MQ=60)
GGAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTAGTTTT > SRR4302534.4955082/1‑94 (MQ=60)
GAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTAGTTTCT < SRR4302534.5168970/94‑1 (MQ=60)
GAGCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTAGTTTCT < SRR4302534.149505/94‑1 (MQ=60)
GCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTAGTTTCTAT < SRR4302534.2189221/94‑1 (MQ=60)
GCAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTAGTTTCTAT < SRR4302534.790843/94‑1 (MQ=60)
GAGGCAGGCGGTCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTAGTTTCTATG < SRR4302534.467081/94‑1 (MQ=60)
GAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTAGTTTCTATG < SRR4302534.5587125/94‑1 (MQ=60)
CAGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTAGTTTCTATG < SRR4302534.1798592/94‑1 (MQ=60)
CAGGCAGGCAGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTAGTTTCTATG > SRR4302534.6464404/1‑94 (MQ=60)
AGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTAGTTTCTATGG < SRR4302534.1611595/94‑1 (MQ=60)
AGGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTAGTTTCTATGG > SRR4302534.328813/1‑94 (MQ=60)
GGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTAGTTTCTATGGC < SRR4302534.4815733/94‑1 (MQ=60)
GGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTAGTTTCTATGGC < SRR4302534.3875327/94‑1 (MQ=60)
GGCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTAGTTTCTATGGC < SRR4302534.1536277/94‑1 (MQ=60)
GGCAGGCGGGCTAATTACCGTTACCGATGCCACTACGCTTACAAAAGAGGTTTCCTCTTTTCTCACCGACGCCGATTACCGTAGTTTCTATGGC < SRR4302534.3166148/94‑1 (MQ=60)
GCAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTAGTTTCTATGGCC < SRR4302534.4230360/94‑1 (MQ=60)
CAGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTAGTTTCTATGGCCG > SRR4302534.860929/1‑94 (MQ=60)
AGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTAGTTTCTATGGCCGT > SRR4302534.3289036/1‑94 (MQ=60)
AGGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTAGTTTCTATGGCCGT > SRR4302534.6439742/1‑94 (MQ=60)
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AATCCGCTGGAAGCTGCCGCACACGCTATTCCGGTATTGATGGGGCCGCATACTTTTAACTTTAAAGACATTTGCGCGCGGCTGGAGCAGGCAAGCGGGCTGATTACCGTTACCGATGCCACTACGCTTGCAAAAGAGGTTTCCTCTTTACTCACCGACGCCGATTACCGTAGTTTCTATGGCCGT > NC_000913/3807169‑3807354
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
