Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,825,188	T→C	M369V (ATG→GTG)	gltS ←	glutamate transport

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,825,188	0	T	C	100.0%	961.6 / NA	276	M369V (ATG→GTG)	gltS	glutamate transport
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (143/133); total (143/133)

Only 100 of 286 total aligned reads displayed.

AAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCATGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAGTGACCCGCAG  >  NC_000913/3825098‑3825277

aaaTCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCAcgt                                                                                         <  1:3742585/93‑1 (MQ=255)

aaaTCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCAcgt                                                                                         >  2:5765470/1‑93 (MQ=255)

 aaTCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCAcgtg                                                                                        <  2:4519199/93‑1 (MQ=255)

 aaTCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCAcgtg                                                                                        <  1:1465810/93‑1 (MQ=255)

 aaTCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCAcgtg                                                                                        <  1:2894696/93‑1 (MQ=255)

  aTCGGCAACATCAAATACAACTTACTTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGACACCACCAAAAACGCCACGTGc                                                                                       >  2:315356/1‑93 (MQ=255)

  aTCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGc                                                                                       <  2:5015487/93‑1 (MQ=255)

    cGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGa                                                                                     >  1:4793561/1‑93 (MQ=255)

     ggCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGAc                                                                                    >  1:3608376/1‑93 (MQ=255)

     ggCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGAc                                                                                    >  1:4328362/1‑93 (MQ=255)

     ggCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGAc                                                                                    <  2:1038099/93‑1 (MQ=255)

     ggCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGAc                                                                                    >  2:1157625/1‑93 (MQ=255)

      gCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACg                                                                                   <  2:4885541/93‑1 (MQ=255)

       cAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACgg                                                                                  <  1:4622289/93‑1 (MQ=255)

       cAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACgg                                                                                  >  2:1274211/1‑93 (MQ=255)

        aaCATCAACTACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACggg                                                                                 >  1:6313950/1‑93 (MQ=255)

        aaCATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACggg                                                                                 >  2:438707/1‑93 (MQ=255)

        aaCATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACggg                                                                                 >  2:4585506/1‑93 (MQ=255)

        aaCATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACggg                                                                                 >  1:4044163/1‑93 (MQ=255)

        aaCATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACggg                                                                                 >  1:2072439/1‑93 (MQ=255)

        aaCATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACggc                                                                                 >  2:2208942/1‑92 (MQ=255)

         aCATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGc                                                                                >  2:802419/1‑93 (MQ=255)

          cATCAAATACAACTTAATTACCAGCGCATTGACGATATCGTTAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGcc                                                                               >  2:2482419/1‑93 (MQ=255)

           aTCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCa                                                                              >  1:2000319/1‑93 (MQ=255)

           aTCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCa                                                                              <  2:933244/93‑1 (MQ=255)

             cAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCaaa                                                                            <  1:6396748/93‑1 (MQ=255)

             cAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCaaa                                                                            <  2:1588527/93‑1 (MQ=255)

             cAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCaaa                                                                            >  1:3197030/1‑93 (MQ=255)

              aaaTACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAg                                                                           >  2:2914025/1‑93 (MQ=255)

                aTACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCg                                                                         >  2:2739120/1‑93 (MQ=255)

                 tACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGt                                                                        <  2:1090409/93‑1 (MQ=255)

                 tACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGt                                                                        <  2:3333229/93‑1 (MQ=255)

                  aCAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGtt                                                                       <  1:6115429/93‑1 (MQ=255)

                  aCAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGtt                                                                       >  1:2712247/1‑93 (MQ=255)

                   cAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTc                                                                      <  1:2652560/93‑1 (MQ=255)

                    aaCTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTcg                                                                     >  1:1912711/1‑92 (MQ=255)

                    aaCTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCa                                                                     >  1:6169208/1‑93 (MQ=255)

                     aCTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAg                                                                    >  1:3426705/1‑93 (MQ=255)

                      cTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGt                                                                   >  1:2434790/1‑93 (MQ=255)

                      cTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGt                                                                   <  2:3993276/93‑1 (MQ=255)

                       ttAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTg                                                                  >  1:4485190/1‑93 (MQ=255)

                         aaTTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGAt                                                                <  2:4776728/93‑1 (MQ=255)

                           ttACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCg                                                              >  1:3275824/1‑93 (MQ=255)

                              ccAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCt                                                           >  2:3068735/1‑93 (MQ=255)

                                aGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGc                                                         >  1:1760474/1‑93 (MQ=255)

                                   gcATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATg                                                      <  1:1782798/93‑1 (MQ=255)

                                   gcATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATg                                                      >  1:4111617/1‑93 (MQ=255)

                                     aTTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGtt                                                    <  1:4392911/93‑1 (MQ=255)

                                           gATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGAt                                              <  1:1589037/93‑1 (MQ=255)

                                            atatCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGAGCGCCTGCATGGTGGCGAtt                                             <  1:6283727/93‑1 (MQ=255)

                                             tatCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTg                                            >  2:6171865/1‑93 (MQ=255)

                                             aatCAATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTg                                            <  1:862801/92‑1 (MQ=255)

                                              atCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGc                                           >  2:3563468/1‑93 (MQ=255)

                                               tCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGcc                                          >  2:1861136/1‑93 (MQ=255)

                                                cGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCg                                         >  2:2128876/1‑93 (MQ=255)

                                                cGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCg                                         <  1:886597/93‑1 (MQ=255)

                                                 gATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGt                                        <  2:3698705/93‑1 (MQ=255)

                                                 gATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGt                                        <  1:1372806/93‑1 (MQ=255)

                                                 gATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGt                                        <  1:3530361/93‑1 (MQ=255)

                                                    aaaGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTgg                                     <  1:4204322/93‑1 (MQ=255)

                                                    aaaGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTgg                                     <  2:5600711/93‑1 (MQ=255)

                                                     aaGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGc                                    >  1:5375607/1‑93 (MQ=255)

                                                       gAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGt                                  <  1:3053762/93‑1 (MQ=255)

                                                       gAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGt                                  >  1:2572056/1‑93 (MQ=255)

                                                         aCGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTg                                >  1:6371862/1‑93 (MQ=255)

                                                            cACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCAc                             >  1:770371/1‑93 (MQ=255)

                                                             cccGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCAcc                            <  1:5479906/92‑1 (MQ=255)

                                                               cGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGa                          <  1:5960539/93‑1 (MQ=255)

                                                                gACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAg                         >  2:4363808/1‑93 (MQ=255)

                                                                gACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAg                         >  2:37643/1‑93 (MQ=255)

                                                                gACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAg                         >  1:2300659/1‑93 (MQ=255)

                                                                 aCCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAgg                        <  1:4646394/93‑1 (MQ=255)

                                                                 aCCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAgg                        <  2:1998754/93‑1 (MQ=255)

                                                                  ccATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGc                       >  1:4078035/1‑93 (MQ=255)

                                                                    aTCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTAGCGATTGCCGTTGGCGTTGCACCGAGGCCa                     >  2:1468295/1‑93 (MQ=255)

                                                                      cGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCaaa                   >  2:5522378/1‑93 (MQ=255)

                                                                      cGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCaaa                   >  2:606804/1‑93 (MQ=255)

                                                                      cGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCaaa                   <  1:396056/93‑1 (MQ=255)

                                                                      cGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTCGCACGGAGCCCaaa                   >  2:2011693/1‑93 (MQ=255)

                                                                       ggCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCaaaa                  >  1:1209371/1‑93 (MQ=255)

                                                                        gCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAAc                 >  2:5347981/1‑93 (MQ=255)

                                                                         caccacCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAAcc                <  2:2675714/93‑1 (MQ=255)

                                                                          accaccAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACca               >  1:370841/1‑93 (MQ=255)

                                                                           ccaccaAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACcac              <  2:5800187/93‑1 (MQ=255)

                                                                           ccaccaAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACcac              >  1:2547347/1‑93 (MQ=255)

                                                                           ccaccaAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACcac              >  1:5752590/1‑93 (MQ=255)

                                                                            caccaAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACcaca             <  1:4278256/93‑1 (MQ=255)

                                                                            caccaAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACcaca             <  2:2090711/93‑1 (MQ=255)

                                                                             accaAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAg            <  1:2127629/93‑1 (MQ=255)

                                                                             accaAAAACGCCACGTGCGACGCGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAg            <  2:6271405/93‑1 (MQ=255)

                                                                              ccaAAACCGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAGt           <  2:5904612/93‑1 (MQ=255)

                                                                              ccaAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAGt           <  2:1509079/93‑1 (MQ=255)

                                                                              ccaAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAGt           <  2:3489270/93‑1 (MQ=255)

                                                                               caAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAGTg          >  1:5191342/1‑93 (MQ=255)

                                                                                aaaaaCGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAGTGa         <  2:5149214/93‑1 (MQ=255)

                                                                                aaaaaCGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAGTGa         <  2:2784679/93‑1 (MQ=255)

                                                                                aaaaaCGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAGTGa         >  2:3851082/1‑93 (MQ=255)

                                                                                 aaaaCGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAGTGAc        >  1:4130145/1‑93 (MQ=255)

                                                                                  aaaCGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAGTGAcc       <  2:3618976/93‑1 (MQ=255)

                                                                                    aCGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAGTGACCCg     >  1:704108/1‑93 (MQ=255)

AAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCATGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAGTGACCCGCAG  >  NC_000913/3825098‑3825277

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCATGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAGTGACCCGCAGCCAG  >  NC_000913/3825095‑3825281

CAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCTTTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCAC                                                                                               <  SRR4302534.363056/94‑1 (MQ=60)

 AAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACG                                                                                              >  SRR4302534.1765702/1‑94 (MQ=60)

   AAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTG                                                                                            <  SRR4302534.5066925/94‑1 (MQ=60)

   AAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTG                                                                                            <  SRR4302534.3843130/94‑1 (MQ=60)

    AATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGC                                                                                           <  SRR4302534.1504363/94‑1 (MQ=60)

    AATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGC                                                                                           <  SRR4302534.2970681/94‑1 (MQ=60)

     ATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACTCCACGTGCG                                                                                          <  SRR4302534.6484078/94‑1 (MQ=60)

     ATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCG                                                                                          <  SRR4302534.4619579/94‑1 (MQ=60)

      TCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGA                                                                                         >  SRR4302534.4923714/1‑94 (MQ=60)

       CGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGAC                                                                                        <  SRR4302534.2140884/94‑1 (MQ=60)

       CGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGAC                                                                                        >  SRR4302534.6602926/1‑94 (MQ=60)

       CGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGAC                                                                                        >  SRR4302534.4445437/1‑94 (MQ=60)

       CGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGAC                                                                                        >  SRR4302534.3705411/1‑94 (MQ=60)

        GGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCCCGTGCGACG                                                                                       <  SRR4302534.6491592/94‑1 (MQ=60)

        GGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACG                                                                                       <  SRR4302534.3168909/94‑1 (MQ=60)

        CGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACG                                                                                       <  SRR4302534.2767169/94‑1 (MQ=60)

         GCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGG                                                                                      <  SRR4302534.2618586/94‑1 (MQ=60)

         GCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGG                                                                                      >  SRR4302534.723856/1‑94 (MQ=60)

          CAACATCAACTACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGG                                                                                     >  SRR4302534.6484624/1‑94 (MQ=60)

          CAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGG                                                                                     <  SRR4302534.3760640/94‑1 (MQ=60)

          CAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGG                                                                                     >  SRR4302534.4152617/1‑94 (MQ=60)

          CAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGG                                                                                     >  SRR4302534.1986526/1‑94 (MQ=60)

          CAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGG                                                                                     <  SRR4302534.4747712/94‑1 (MQ=60)

          CAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGG                                                                                     >  SRR4302534.2126661/1‑94 (MQ=60)

          CAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGG                                                                                     >  SRR4302534.2126758/1‑94 (MQ=60)

            ACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAGAACGCCACGTGCGACGGGCC                                                                                   <  SRR4302534.6494205/94‑1 (MQ=60)

             CATCAACTACAACGTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGCCCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCA                                                                                  <  SRR4302534.4890131/94‑1 (MQ=60)

             CATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCA                                                                                  >  SRR4302534.1307121/1‑94 (MQ=60)

             CATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCA                                                                                  >  SRR4302534.2052702/1‑94 (MQ=60)

             CATCAAATACAACTTAATTACCAGCGCATTGACGATAACGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCA                                                                                  <  SRR4302534.906349/94‑1 (MQ=60)

              ATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAA                                                                                 >  SRR4302534.358491/1‑94 (MQ=60)

               TCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAA                                                                                >  SRR4302534.3281791/1‑94 (MQ=60)

                CAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAG                                                                               <  SRR4302534.3367055/94‑1 (MQ=60)

                CAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAG                                                                               <  SRR4302534.6569492/94‑1 (MQ=60)

                CAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAG                                                                               <  SRR4302534.4147937/94‑1 (MQ=60)

                CAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAG                                                                               >  SRR4302534.4157147/1‑94 (MQ=60)

                 AAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGC                                                                              <  SRR4302534.6560120/94‑1 (MQ=60)

                 AAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGC                                                                              <  SRR4302534.4749505/94‑1 (MQ=60)

                   ATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGT                                                                            >  SRR4302534.2003761/1‑94 (MQ=60)

                   ATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGT                                                                            >  SRR4302534.181838/1‑94 (MQ=60)

                    TACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTT                                                                           <  SRR4302534.1416330/94‑1 (MQ=60)

                    TACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTT                                                                           >  SRR4302534.2783852/1‑94 (MQ=60)

                     ACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTC                                                                          >  SRR4302534.3830919/1‑94 (MQ=60)

                     ACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTC                                                                          <  SRR4302534.6281793/94‑1 (MQ=60)

                      CAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCG                                                                         >  SRR4302534.1962639/1‑94 (MQ=60)

                      CAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCA                                                                         <  SRR4302534.2722713/94‑1 (MQ=60)

                      CAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCA                                                                         >  SRR4302534.6337002/1‑94 (MQ=60)

                      CAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCA                                                                         <  SRR4302534.4489002/94‑1 (MQ=60)

                       AACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAG                                                                        >  SRR4302534.3518768/1‑94 (MQ=60)

                        ACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGT                                                                       <  SRR4302534.1673879/94‑1 (MQ=60)

                        ACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGT                                                                       >  SRR4302534.2499502/1‑94 (MQ=60)

                         CTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTG                                                                      >  SRR4302534.4606550/1‑94 (MQ=60)

                         CTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTG                                                                      <  SRR4302534.2892958/94‑1 (MQ=60)

                            AATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATC                                                                   <  SRR4302534.783407/94‑1 (MQ=60)

                            AATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATC                                                                   >  SRR4302534.4218902/1‑94 (MQ=60)

                            AATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATC                                                                   <  SRR4302534.2904527/94‑1 (MQ=60)

                             ATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCG                                                                  >  SRR4302534.3363122/1‑94 (MQ=60)

                              TTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGC                                                                 >  SRR4302534.3303255/1‑94 (MQ=60)

                               TACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCC                                                                >  SRR4302534.4233940/1‑94 (MQ=60)

                                 CCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTG                                                              <  SRR4302534.2990654/94‑1 (MQ=60)

                                  CAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGC                                                             >  SRR4302534.1806152/1‑94 (MQ=60)

                                  CAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGGTCAGTGATCGCCTGC                                                             >  SRR4302534.882565/1‑94 (MQ=60)

                                   AGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCA                                                            >  SRR4302534.3598967/1‑94 (MQ=60)

                                    GCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCAT                                                           <  SRR4302534.534679/94‑1 (MQ=60)

                                     CGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATG                                                          >  SRR4302534.4222228/1‑94 (MQ=60)

                                      GCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGT                                                         <  SRR4302534.1829087/94‑1 (MQ=60)

                                      GCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGT                                                         >  SRR4302534.5550585/1‑94 (MQ=60)

                                       CATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTT                                                        <  SRR4302534.2073694/94‑1 (MQ=60)

                                       CATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTT                                                        <  SRR4302534.4724383/94‑1 (MQ=60)

                                       CATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTT                                                        <  SRR4302534.6289377/94‑1 (MQ=60)

                                        TTTGACGATATCGATAAGCAACGCTCCGACCATCGGCACCACCAAAAACGCCGCGTGCGACGGGCGAAAGCGTGCAGTGATCGCCTGCATGTTG                                                       <  SRR4302534.2712709/94‑1 (MQ=60)

                                        ATTGACGATATCGATAAAGAACGCACCGACCATCGTCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTG                                                       >  SRR4302534.221064/1‑94 (MQ=60)

                                        ATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGGCAAAGCGTTCAGTGATCGCCTGCATGTTG                                                       >  SRR4302534.3585384/1‑94 (MQ=60)

                                        ATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTG                                                       <  SRR4302534.4511387/94‑1 (MQ=60)

                                        ATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTG                                                       <  SRR4302534.3939328/94‑1 (MQ=60)

                                         TTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGG                                                      <  SRR4302534.4136947/94‑1 (MQ=60)

                                         TTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGG                                                      <  SRR4302534.6311486/94‑1 (MQ=60)

                                          TGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGC                                                     >  SRR4302534.6092384/1‑94 (MQ=60)

                                          TGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGC                                                     >  SRR4302534.6229619/1‑94 (MQ=60)

                                           GACGATATCGATAAAGAACTCACCGACCATCGGCACCACCAAAAACGCCTCGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCG                                                    <  SRR4302534.6183514/94‑1 (MQ=60)

                                            ACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGA                                                   <  SRR4302534.4547891/94‑1 (MQ=60)

                                              GATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATT                                                 <  SRR4302534.1630599/94‑1 (MQ=60)

                                               ATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGAGCGCCTGCATGGTGGCGATTG                                                <  SRR4302534.6453751/94‑1 (MQ=60)

                                                aatcaATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGC                                               <  SRR4302534.884582/89‑1 (MQ=60)

                                                TATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGC                                               >  SRR4302534.3009139/1‑94 (MQ=60)

                                                  TCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCG                                             <  SRR4302534.4341505/94‑1 (MQ=60)

                                                   CGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGT                                            <  SRR4302534.909042/94‑1 (MQ=60)

                                                   CGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGT                                            >  SRR4302534.1439791/1‑94 (MQ=60)

                                                   CGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGT                                            >  SRR4302534.6567492/1‑94 (MQ=60)

                                                    GATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTT                                           <  SRR4302534.3625314/94‑1 (MQ=60)

                                                    GATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTT                                           <  SRR4302534.1408978/94‑1 (MQ=60)

                                                    GATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTT                                           <  SRR4302534.5833824/94‑1 (MQ=60)

                                                    GATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTT                                           >  SRR4302534.6453862/1‑94 (MQ=60)

                                                    GATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTT                                           >  SRR4302534.886184/1‑94 (MQ=60)

                                                      TAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGG                                         <  SRR4302534.4167932/94‑1 (MQ=60)

                                                       AAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGC                                        <  SRR4302534.4317824/94‑1 (MQ=60)

                                                       AAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGC                                        >  SRR4302534.4934810/1‑94 (MQ=60)

                                                       AAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGC                                        >  SRR4302534.5520456/1‑94 (MQ=60)

                                                       AAAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGACGTTGGG                                        >  SRR4302534.2675674/1‑94 (MQ=60)

                                                        AAGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCG                                       <  SRR4302534.6348979/94‑1 (MQ=60)

                                                         AGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGT                                      >  SRR4302534.2682554/1‑94 (MQ=60)

                                                         AGAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGT                                      >  SRR4302534.2640215/1‑94 (MQ=60)

                                                          GAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTT                                     <  SRR4302534.3133884/94‑1 (MQ=60)

                                                          GAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTT                                     >  SRR4302534.3738642/1‑94 (MQ=60)

                                                          GAACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTT                                     <  SRR4302534.2543981/94‑1 (MQ=60)

                                                           AACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTG                                    >  SRR4302534.6543904/1‑94 (MQ=60)

                                                           AACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTG                                    <  SRR4302534.4434229/94‑1 (MQ=60)

                                                            ACGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGC                                   <  SRR4302534.4309013/94‑1 (MQ=60)

                                                             CGCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCA                                  >  SRR4302534.1882950/1‑94 (MQ=60)

                                                              GCACCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCAC                                 >  SRR4302534.789535/1‑94 (MQ=60)

                                                                CCCGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCG                               <  SRR4302534.5627685/94‑1 (MQ=60)

                                                                  CGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAG                             >  SRR4302534.1580540/1‑94 (MQ=60)

                                                                  CGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAG                             >  SRR4302534.4560123/1‑94 (MQ=60)

                                                                  CGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAG                             <  SRR4302534.6122372/94‑1 (MQ=60)

                                                                  CGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAG                             >  SRR4302534.711631/1‑94 (MQ=60)

                                                                  CGACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAG                             >  SRR4302534.2361728/1‑94 (MQ=60)

                                                                   GACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGG                            <  SRR4302534.3467388/94‑1 (MQ=60)

                                                                   GACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGG                            >  SRR4302534.5548663/1‑94 (MQ=60)

                                                                   GACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGG                            >  SRR4302534.2201310/1‑94 (MQ=60)

                                                                   CACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGG                            <  SRR4302534.185598/94‑1 (MQ=60)

                                                                    ACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGCGGC                           >  SRR4302534.4187664/1‑94 (MQ=60)

                                                                    ACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGC                           <  SRR4302534.4772520/94‑1 (MQ=60)

                                                                    ACCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGC                           >  SRR4302534.4187481/1‑94 (MQ=60)

                                                                     CCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCC                          >  SRR4302534.912110/1‑94 (MQ=60)

                                                                     CCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCC                          >  SRR4302534.2623371/1‑94 (MQ=60)

                                                                     CCATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGGTGCACCGAGGCC                          >  SRR4302534.5810394/1‑94 (MQ=60)

                                                                      CATCGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCA                         >  SRR4302534.1807929/1‑94 (MQ=60)

                                                                         CGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAA                      >  SRR4302534.1241189/1‑94 (MQ=60)

                                                                         CGGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAA                      <  SRR4302534.406187/94‑1 (MQ=60)

                                                                          GGCACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAAC                     <  SRR4302534.2537244/94‑1 (MQ=60)

                                                                            CACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCA                   >  SRR4302534.380299/1‑94 (MQ=60)

                                                                            CACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCA                   >  SRR4302534.398051/1‑94 (MQ=60)

                                                                             ACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCAC                  >  SRR4302534.5908576/1‑94 (MQ=60)

                                                                             ACCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCAC                  >  SRR4302534.2614892/1‑94 (MQ=60)

                                                                              CCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACA                 <  SRR4302534.2429286/94‑1 (MQ=60)

                                                                              CCACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACA                 >  SRR4302534.36687/1‑94 (MQ=60)

                                                                               CACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAG                <  SRR4302534.4394021/94‑1 (MQ=60)

                                                                               CACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAG                <  SRR4302534.4424694/94‑1 (MQ=60)

                                                                                ACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAGT               >  SRR4302534.4782178/1‑94 (MQ=60)

                                                                                ACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAGT               <  SRR4302534.435756/94‑1 (MQ=60)

                                                                                ACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAGT               >  SRR4302534.3334664/1‑94 (MQ=60)

                                                                                ACCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAGT               <  SRR4302534.2183668/94‑1 (MQ=60)

                                                                                 CCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAGTG              <  SRR4302534.5930417/94‑1 (MQ=60)

                                                                                 CCAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAGTG              >  SRR4302534.5331294/1‑94 (MQ=60)

                                                                                  CAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAGTGA             <  SRR4302534.2436357/94‑1 (MQ=60)

                                                                                  CAAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAGTGA             <  SRR4302534.3176313/94‑1 (MQ=60)

                                                                                   AAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAGTGAC            >  SRR4302534.4241445/1‑94 (MQ=60)

                                                                                   AAAAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAGTGAC            >  SRR4302534.3837297/1‑94 (MQ=60)

                                                                                     AAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAGTGACCC          <  SRR4302534.429564/94‑1 (MQ=60)

                                                                                     AAACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAGTGACCC          <  SRR4302534.1526683/94‑1 (MQ=60)

                                                                                      AACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAGTGACCCG         >  SRR4302534.643034/1‑94 (MQ=60)

                                                                                      AACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAGTGACCCG         <  SRR4302534.538623/94‑1 (MQ=60)

                                                                                      AACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAGTGACCCG         >  SRR4302534.1751964/1‑94 (MQ=60)

                                                                                      AACGCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAGTGACCCG         >  SRR4302534.721377/1‑94 (MQ=60)

                                                                                         GCCACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAGTGACCCGCAG      >  SRR4302534.4459509/1‑94 (MQ=60)

                                                                                           CACGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAGTGACCCGCAGCC    <  SRR4302534.3969919/94‑1 (MQ=60)

                                                                                             CGTGCGACGGGCGAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAGTGACCCGCAGCCAG  <  SRR4302534.4541001/94‑1 (MQ=60)

                                                                                             CGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAGTGACCCGCAGCCAG  <  SRR4302534.2788375/94‑1 (MQ=60)

                                                                                             CGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAGTGACCCGCAGCCAG  <  SRR4302534.6560103/94‑1 (MQ=60)

                                                                                             CGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAGTGACCCGCAGCCAG  >  SRR4302534.4309016/1‑94 (MQ=60)

CAAAAATCGGCAACATCAAATACAACTTAATTACCAGCGCATTGACGATATCGATAAAGAACGCACCGACCATCGGCACCACCAAAAACGCCATGTGCGACGGGCCAAAGCGTTCAGTGATCGCCTGCATGTTGGCGATTGCCGTTGGCGTTGCACCGAGGCCAAAACCACAGTGACCCGCAGCCAG  >  NC_000913/3825095‑3825281

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 6 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`