Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,842,291	G→A	C234Y (TGC→TAC)	yicP →	putative adenine deaminase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,842,291	0	G	A	99.6%	948.0 / ‑5.3	250	C234Y (TGC→TAC)	yicP	putative adenine deaminase
Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (138/111); total (138/112)
Fisher's exact test for biased strand distribution p-value = 4.48e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.59e-01

Only 100 of 252 total aligned reads displayed.

TGCATTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTGCCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGCTGCCCGCAATC  >  NC_000913/3842202‑3842380

 gCATTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCAc                                                                                       >  2:2637665/1‑93 (MQ=255)

  cATTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACg                                                                                      <  2:3836588/93‑1 (MQ=255)

   aTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGa                                                                                     >  2:228930/1‑93 (MQ=255)

   aTTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGa                                                                                     >  2:2843182/1‑93 (MQ=255)

       cGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGt                                                                                 <  2:1913078/93‑1 (MQ=255)

        gCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGtt                                                                                <  1:4136054/93‑1 (MQ=255)

          cACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTAt                                                                              >  2:2055584/1‑93 (MQ=255)

           aCCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATc                                                                             >  1:3786875/1‑93 (MQ=255)

           aCCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATc                                                                             <  1:2831006/93‑1 (MQ=255)

            ccTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCa                                                                            >  1:5985087/1‑93 (MQ=255)

               gACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCt                                                                         <  1:4436419/93‑1 (MQ=255)

                 cGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTgg                                                                       <  1:4535304/93‑1 (MQ=255)

                 cGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTgg                                                                       <  1:4332384/93‑1 (MQ=255)

                 cGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTgg                                                                       <  2:4224987/93‑1 (MQ=255)

                  gCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGACAGTTATCAGCTgca                                                                      >  1:1600461/1‑91 (MQ=255)

                  gCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGga                                                                      >  2:4977637/1‑93 (MQ=255)

                   cTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGgaa                                                                     >  1:2230312/1‑93 (MQ=255)

                   cTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGgaa                                                                     >  1:1092139/1‑93 (MQ=255)

                   cTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGgaa                                                                     <  2:4613774/93‑1 (MQ=255)

                     ggACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGgaaga                                                                   <  2:1826837/93‑1 (MQ=255)

                      gACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGgaagaa                                                                  <  2:574855/93‑1 (MQ=255)

                      gACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGgaagaa                                                                  <  2:4162577/93‑1 (MQ=255)

                       aCGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGaagaag                                                                 <  2:3602924/93‑1 (MQ=255)

                        cGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAgg                                                                >  2:2569273/1‑93 (MQ=255)

                         ggTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGa                                                               <  2:1582232/93‑1 (MQ=255)

                          gTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGAc                                                              <  2:6358369/93‑1 (MQ=255)

                             aCTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGcc                                                           >  2:3328690/1‑93 (MQ=255)

                             aCTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGcc                                                           <  1:322001/93‑1 (MQ=255)

                               tGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCgg                                                         <  2:2741442/93‑1 (MQ=255)

                               tGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCgg                                                         >  2:341399/1‑93 (MQ=255)

                                  ccGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGaaa                                                      >  2:1164866/1‑93 (MQ=255)

                                  ccGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGaaa                                                      >  2:2131165/1‑93 (MQ=255)

                                   cGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAAt                                                     <  1:2026741/93‑1 (MQ=255)

                                    gggTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAAtt                                                    >  2:755930/1‑93 (MQ=255)

                                      gTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTAc                                                  >  2:6148363/1‑93 (MQ=255)

                                      gTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTAc                                                  >  2:1419169/1‑93 (MQ=255)

                                      gTTTGGGGGGTAAAGAACTTAACGCCTATATTACTGCGGGGATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTAc                                                  >  1:5659485/1‑93 (MQ=255)

                                       tttGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGCATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACa                                                 >  1:5233791/1‑93 (MQ=255)

                                        ttGGGGGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACaa                                                >  1:1286271/1‑93 (MQ=255)

                                           ggtggtAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTc                                             <  1:3912350/93‑1 (MQ=255)

                                           ggtggtAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTc                                             <  1:5828311/93‑1 (MQ=255)

                                              ggtAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGc                                          >  1:60488/1‑93 (MQ=255)

                                              ggtAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGc                                          >  1:1017681/1‑93 (MQ=255)

                                                tAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCAt                                        >  1:6347760/1‑93 (MQ=255)

                                                tAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCAt                                        >  1:5866446/1‑93 (MQ=255)

                                                 aaaGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATg                                       <  1:322879/93‑1 (MQ=255)

                                                 aaaGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATg                                       >  1:5528672/1‑93 (MQ=255)

                                                  aaGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGt                                      >  1:1863000/1‑93 (MQ=255)

                                                   aGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAATAAGGACGCCGGAAATTACAACTCGGCATGTc                                     <  1:5148743/93‑1 (MQ=255)

                                                   aGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTc                                     <  1:6277915/93‑1 (MQ=255)

                                                   aGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTc                                     >  1:4621612/1‑93 (MQ=255)

                                                   aGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTc                                     >  1:4861404/1‑93 (MQ=255)

                                                     aaCTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGt                                   >  2:508818/1‑93 (MQ=255)

                                                      aCTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGtt                                  >  1:3018773/1‑93 (MQ=255)

                                                      aCTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGtt                                  >  2:5988849/1‑93 (MQ=255)

                                                       cTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTtg                                 >  1:1381434/1‑93 (MQ=255)

                                                        ttAACGGCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTtga                                <  2:1186217/93‑1 (MQ=255)

                                                        ttAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTtga                                <  2:4912952/93‑1 (MQ=255)

                                                        ttAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTtga                                <  2:3015021/93‑1 (MQ=255)

                                                        ttAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTtga                                >  2:6236085/1‑93 (MQ=255)

                                                            cGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTgatgat                            <  1:5005362/93‑1 (MQ=255)

                                                             gCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATc                           <  2:4943004/93‑1 (MQ=255)

                                                             gCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATc                           <  1:219242/93‑1 (MQ=255)

                                                             gCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATc                           <  1:5296809/93‑1 (MQ=255)

                                                              ccTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATcc                          <  2:5960123/93‑1 (MQ=255)

                                                                 atatTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCcgcg                       >  2:1370268/1‑93 (MQ=255)

                                                                 atatTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCcgcg                       <  2:268438/93‑1 (MQ=255)

                                                                   atTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGaa                     <  2:4722637/93‑1 (MQ=255)

                                                                    ttACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAg                    <  2:1103789/93‑1 (MQ=255)

                                                                    ttACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAg                    <  1:5607842/93‑1 (MQ=255)

                                                                    ttACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAg                    <  2:3097504/93‑1 (MQ=255)

                                                                     tACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAgg                   <  1:1571575/93‑1 (MQ=255)

                                                                     tACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAgg                   <  2:2675967/93‑1 (MQ=255)

                                                                     tACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAgg                   >  1:3127860/1‑93 (MQ=255)

                                                                     tACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAgg                   <  1:4774508/93‑1 (MQ=255)

                                                                       cTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGt                 <  2:3729999/93‑1 (MQ=255)

                                                                       cTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGt                 <  2:5141278/93‑1 (MQ=255)

                                                                       cTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGt                 <  1:3642082/93‑1 (MQ=255)

                                                                        tGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTc                <  1:2680992/93‑1 (MQ=255)

                                                                        tGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTc                <  2:5556131/93‑1 (MQ=255)

                                                                          cGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCg              >  1:2851824/1‑93 (MQ=255)

                                                                          cGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCg              <  2:611627/93‑1 (MQ=255)

                                                                           gggTATTGAAACCTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGc             <  2:230594/93‑1 (MQ=255)

                                                                           gggTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGc             <  2:933774/93‑1 (MQ=255)

                                                                           gggTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGc             <  2:4830459/93‑1 (MQ=255)

                                                                           gggTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGc             >  2:4115549/1‑93 (MQ=255)

                                                                           gggTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGc             <  1:819906/93‑1 (MQ=255)

                                                                           gggTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGc             >  1:2488771/1‑93 (MQ=255)

                                                                           gggTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGc             <  1:1191073/93‑1 (MQ=255)

                                                                            ggTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGCt            >  1:3846177/1‑93 (MQ=255)

                                                                              tATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTTATGATCCGCGAAGGGTCCGCTGc          <  1:5370733/93‑1 (MQ=255)

                                                                               aTTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGCTGcc         >  2:4423642/1‑93 (MQ=255)

                                                                                ttGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGCTGccc        >  2:3292325/1‑93 (MQ=255)

                                                                                ttGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGCTGccc        <  2:1548079/93‑1 (MQ=255)

                                                                                ttGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGCTGccc        <  1:1036260/93‑1 (MQ=255)

                                                                                  gAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGGCCGCTGCCCGc      >  2:762917/1‑93 (MQ=255)

                                                                                   aaaaCTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGCTGCCCGCa     >  2:1023301/1‑93 (MQ=255)

                                                                                     aaCTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGCTGCCCGCAAt   >  1:4837085/1‑93 (MQ=255)

                                                                                     aaCTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGCTGCCCGCAAt   >  1:4305830/1‑93 (MQ=255)

                                                                                      aCTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGCTGCCCGCAAtc  >  2:3377989/1‑93 (MQ=255)

TGCATTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTGCCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGCTGCCCGCAATC  >  NC_000913/3842202‑3842380

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGGATGCATTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTGCCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGCTGCCCGCAATCTCAA  >  NC_000913/3842198‑3842384

TGGATGCATTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTA                                                                                               <  SRR4302534.3641387/94‑1 (MQ=60)

    TGCATTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCAC                                                                                           <  SRR4302534.5292453/94‑1 (MQ=60)

     GCATTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACG                                                                                          <  SRR4302534.1098845/94‑1 (MQ=60)

     GCATTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACG                                                                                          <  SRR4302534.4530693/94‑1 (MQ=60)

     GCATTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACG                                                                                          <  SRR4302534.4439350/94‑1 (MQ=60)

      CATTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGA                                                                                         >  SRR4302534.5376291/1‑94 (MQ=60)

      CATTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGCTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGA                                                                                         >  SRR4302534.1738495/1‑94 (MQ=60)

         TTCGCCACCTGACGTTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAAGGCCTATATTACGGCGGGTATTGAAAACTACCACGAAAG                                                                                      <  SRR4302534.4387383/94‑1 (MQ=60)

          TCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGGATTGAAAACTACCACGAAAGT                                                                                     >  SRR4302534.4539526/1‑94 (MQ=60)

           CGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTT                                                                                    >  SRR4302534.3311467/1‑94 (MQ=60)

           CGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTT                                                                                    <  SRR4302534.1243458/94‑1 (MQ=60)

            GCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTA                                                                                   <  SRR4302534.4247655/94‑1 (MQ=60)

             CCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTAT                                                                                  >  SRR4302534.3240572/1‑94 (MQ=60)

              CACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATC                                                                                 >  SRR4302534.3888540/1‑94 (MQ=60)

              CACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATA                                                                                 >  SRR4302534.1107761/1‑94 (MQ=60)

              CACCTGACGCTGGACGGTCACTGCCCGGGCTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACCACCACGAAAGTTATC                                                                                 >  SRR4302534.5457044/1‑94 (MQ=60)

               ACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCA                                                                                <  SRR4302534.3978141/94‑1 (MQ=60)

               ACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCA                                                                                >  SRR4302534.6147669/1‑94 (MQ=60)

               ACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCA                                                                                <  SRR4302534.2905402/94‑1 (MQ=60)

                  TGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCT                                                                             >  SRR4302534.2786634/1‑94 (MQ=60)

                  TGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCT                                                                             <  SRR4302534.3037140/94‑1 (MQ=60)

                  TGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCT                                                                             <  SRR4302534.22470/94‑1 (MQ=60)

                  TGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCT                                                                             >  SRR4302534.3945591/1‑94 (MQ=60)

                   GACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTG                                                                            <  SRR4302534.4556213/94‑1 (MQ=60)

                     CGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGACAGTTATCAGCTGCA                                                                          >  SRR4302534.1642273/1‑94 (MQ=60)

                     CGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGA                                                                          <  SRR4302534.4449529/94‑1 (MQ=60)

                     CGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGA                                                                          <  SRR4302534.4658209/94‑1 (MQ=60)

                      GCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAA                                                                         >  SRR4302534.386884/1‑94 (MQ=60)

                      GCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAA                                                                         >  SRR4302534.2289382/1‑94 (MQ=60)

                      GCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAA                                                                         >  SRR4302534.1120546/1‑94 (MQ=60)

                       CTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAG                                                                        >  SRR4302534.4317721/1‑94 (MQ=60)

                           ACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGG                                                                    >  SRR4302534.1275012/1‑94 (MQ=60)

                             GGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGAC                                                                  <  SRR4302534.3032106/94‑1 (MQ=60)

                                CACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCC                                                               >  SRR4302534.145510/1‑94 (MQ=60)

                                 ACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCG                                                              <  SRR4302534.330279/94‑1 (MQ=60)

                                 ACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCG                                                              >  SRR4302534.319395/1‑94 (MQ=60)

                                    GCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAA                                                           <  SRR4302534.547317/94‑1 (MQ=60)

                                      CCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAAT                                                         >  SRR4302534.1204152/1‑94 (MQ=60)

                                       CGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATT                                                        <  SRR4302534.2079758/94‑1 (MQ=60)

                                       CGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATT                                                        <  SRR4302534.4945283/94‑1 (MQ=60)

                                        GGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTA                                                       <  SRR4302534.5748944/94‑1 (MQ=60)

                                        GGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTA                                                       <  SRR4302534.408962/94‑1 (MQ=60)

                                         GGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTAC                                                      >  SRR4302534.4566883/1‑94 (MQ=60)

                                         GGTTTGGGGGGTAAAGAACTTAACGCCTATATTACTGCGGGGATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTAC                                                      >  SRR4302534.5812701/1‑94 (MQ=60)

                                          GTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACA                                                     >  SRR4302534.3274395/1‑94 (MQ=60)

                                          GTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGCATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACA                                                     >  SRR4302534.5375091/1‑94 (MQ=60)

                                           TTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAA                                                    >  SRR4302534.5752636/1‑94 (MQ=60)

                                           TTTGGGGGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAA                                                    >  SRR4302534.1320141/1‑94 (MQ=60)

                                            TTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAAC                                                   >  SRR4302534.2861488/1‑94 (MQ=60)

                                               GGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCG                                                <  SRR4302534.4017254/94‑1 (MQ=60)

                                               GGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCG                                                <  SRR4302534.5986503/94‑1 (MQ=60)

                                                 TGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGC                                              >  SRR4302534.62127/1‑94 (MQ=60)

                                                 TGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGC                                              <  SRR4302534.6378902/94‑1 (MQ=60)

                                                 TGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGC                                              >  SRR4302534.1043880/1‑94 (MQ=60)

                                                  GGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCA                                             >  SRR4302534.60090/1‑94 (MQ=60)

                                                   GTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCAT                                            >  SRR4302534.6025733/1‑94 (MQ=60)

                                                   GTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCAT                                            >  SRR4302534.6519197/1‑94 (MQ=60)

                                                    TAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATG                                           <  SRR4302534.408074/94‑1 (MQ=60)

                                                    TAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATG                                           >  SRR4302534.5677882/1‑94 (MQ=60)

                                                     AAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGT                                          <  SRR4302534.331179/94‑1 (MQ=60)

                                                     AAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGT                                          >  SRR4302534.1911495/1‑94 (MQ=60)

                                                      AAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTC                                         >  SRR4302534.4747017/1‑94 (MQ=60)

                                                      AAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTC                                         >  SRR4302534.4993288/1‑94 (MQ=60)

                                                       AGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAATAAGGACGCCGGAAATTACAACTCGGCATGTCG                                        <  SRR4302534.5287655/94‑1 (MQ=60)

                                                       AGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCG                                        <  SRR4302534.6469029/94‑1 (MQ=60)

                                                       AGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCG                                        <  SRR4302534.6447835/94‑1 (MQ=60)

                                                         AACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTT                                      >  SRR4302534.3097814/1‑94 (MQ=60)

                                                         AACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTT                                      >  SRR4302534.2924980/1‑94 (MQ=60)

                                                          ACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTG                                     <  SRR4302534.596228/94‑1 (MQ=60)

                                                          ACTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTG                                     >  SRR4302534.1417810/1‑94 (MQ=60)

                                                           CTTAACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGA                                    >  SRR4302534.194782/1‑94 (MQ=60)

                                                              AACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGA                                 >  SRR4302534.2307375/1‑94 (MQ=60)

                                                               ACGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGAT                                <  SRR4302534.26483/94‑1 (MQ=60)

                                                               ACGCCGATATTACTGCGAGTATTTAAAACTACCACGAAAGTTATCAGTTGGAAGAAGGACGCCGTAAATTACAACTCGGCATGTCGTTGATGAT                                <  SRR4302534.6075511/94‑1 (MQ=60)

                                                               ACGCCCATATTTCTGAGGGTACTGAAGACTACCACGAAAGTTATCAACTGGAAGAAGGACGCCGGAAATTACATCGCGGCATGTCGTTGATGAT                                <  SRR4302534.5137775/94‑1 (MQ=53)

                                                                CGCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATC                               <  SRR4302534.5140663/94‑1 (MQ=60)

                                                                 GCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCC                              <  SRR4302534.224989/94‑1 (MQ=60)

                                                                 GCCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCC                              <  SRR4302534.5439761/94‑1 (MQ=60)

                                                                  CCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCG                             <  SRR4302534.3685051/94‑1 (MQ=60)

                                                                  CCTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCG                             <  SRR4302534.1824308/94‑1 (MQ=60)

                                                                   CTATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGC                            >  SRR4302534.5794490/1‑94 (MQ=60)

                                                                    TATATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCG                           <  SRR4302534.4915229/94‑1 (MQ=60)

                                                                      TATTACTGCGGGGATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAG                         >  SRR4302534.2262114/1‑94 (MQ=60)

                                                                       ATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGGGAAG                        >  SRR4302534.2099142/1‑94 (MQ=60)

                                                                       ATTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAG                        >  SRR4302534.1563475/1‑94 (MQ=60)

                                                                       ATTACTGCGGATATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAG                        <  SRR4302534.5109792/94‑1 (MQ=60)

                                                                        TTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGG                       <  SRR4302534.5759535/94‑1 (MQ=60)

                                                                        TTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGG                       >  SRR4302534.3210097/1‑94 (MQ=60)

                                                                        TTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGG                       >  SRR4302534.6054291/1‑94 (MQ=60)

                                                                        TTACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGG                       <  SRR4302534.1056478/94‑1 (MQ=60)

                                                                         TACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGG                      <  SRR4302534.4904159/94‑1 (MQ=60)

                                                                         TACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGG                      <  SRR4302534.1612728/94‑1 (MQ=60)

                                                                          ACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGT                     <  SRR4302534.595146/94‑1 (MQ=60)

                                                                          ACTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGT                     <  SRR4302534.923639/94‑1 (MQ=60)

                                                                           CTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTC                    <  SRR4302534.3739961/94‑1 (MQ=60)

                                                                           CTGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTC                    >  SRR4302534.6189990/1‑94 (MQ=60)

                                                                            TGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCC                   <  SRR4302534.1375527/94‑1 (MQ=60)

                                                                            TGCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCC                   <  SRR4302534.2751859/94‑1 (MQ=60)

                                                                             GCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCG                  >  SRR4302534.6635109/1‑94 (MQ=60)

                                                                             GCGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCG                  >  SRR4302534.2926744/1‑94 (MQ=60)

                                                                              CGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGC                 >  SRR4302534.5099579/1‑94 (MQ=60)

                                                                              CGGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGC                 >  SRR4302534.2554885/1‑94 (MQ=60)

                                                                               GGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGCT                >  SRR4302534.3362459/1‑94 (MQ=60)

                                                                               GGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGCT                <  SRR4302534.1222398/94‑1 (MQ=60)

                                                                               GGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGCT                >  SRR4302534.3949464/1‑94 (MQ=60)

                                                                               GGGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGCT                <  SRR4302534.840523/94‑1 (MQ=60)

                                                                                GGTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGCTG               >  SRR4302534.497727/1‑94 (MQ=60)

                                                                                 GTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGCTGC              <  SRR4302534.5587187/94‑1 (MQ=60)

                                                                                 GTATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGCTGC              <  SRR4302534.475687/94‑1 (MQ=60)

                                                                                  TATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTTATGATCCGCGAAGGGTCCGCTGCC             <  SRR4302534.5515457/94‑1 (MQ=60)

                                                                                  TATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGCTGCC             >  SRR4302534.3920887/1‑94 (MQ=60)

                                                                                  TATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATACGCGAAGGGTCCGCTGCC             >  SRR4302534.6283961/1‑94 (MQ=60)

                                                                                   ATTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGCTGCCC            <  SRR4302534.819839/94‑1 (MQ=60)

                                                                                    TTGAAAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGCTGCCCG           <  SRR4302534.1063001/94‑1 (MQ=60)

                                                                                       AAAACTACCACGAAAGTTATCAGCGGGAAGAAGGACGCCGGAAATTAGAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGCTGCCCGCAA        >  SRR4302534.5321293/1‑94 (MQ=60)

                                                                                       AAAACTACCACGAAAGCTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGTCATGTCGGTGATGATTCGCGGAGGGACCGCTGCCCGCgt        >  SRR4302534.4666117/1‑92 (MQ=60)

                                                                                        AAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGCTGCCCGCAAT       >  SRR4302534.4422546/1‑94 (MQ=60)

                                                                                        AAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGCTGCCCGCAAT       >  SRR4302534.4694357/1‑94 (MQ=60)

                                                                                        AAACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGCTGCCCGCAAT       >  SRR4302534.4968305/1‑94 (MQ=60)

                                                                                         AACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGCTGCCCGCAATC      >  SRR4302534.1614453/1‑94 (MQ=60)

                                                                                         AACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGCTGCCCGCAATC      >  SRR4302534.2516025/1‑94 (MQ=60)

                                                                                         AACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGGCCGCTGCCCGCAATC      >  SRR4302534.5238294/1‑94 (MQ=60)

                                                                                          ACTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGCTGCCCGCAATCT     >  SRR4302534.4247204/1‑94 (MQ=60)

                                                                                           CTACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGCTGCCCGCAATCTC    >  SRR4302534.5832582/1‑94 (MQ=60)

                                                                                            TACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGCTGCCCGCAATCTCA   <  SRR4302534.3183217/94‑1 (MQ=60)

                                                                                            TACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGCTGCCCGCAATCTCA   >  SRR4302534.441373/1‑94 (MQ=60)

                                                                                            TACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGCTGCCCGCAATCTCA   >  SRR4302534.5472079/1‑94 (MQ=60)

                                                                                             ACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGCTGCCCGCAATCTCAA  <  SRR4302534.3829312/94‑1 (MQ=60)

                                                                                             ACCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGGCCGCTGCCCGCAATCTCAA  >  SRR4302534.3566063/1‑94 (MQ=60)

TGGATGCATTTCGCCACCTGACGCTGGACGGTCACTGCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATTGAAAACTGCCACGAAAGTTATCAGCTGGAAGAAGGACGCCGGAAATTACAACTCGGCATGTCGTTGATGATCCGCGAAGGGTCCGCTGCCCGCAATCTCAA  >  NC_000913/3842198‑3842384

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`