Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,845,875 |
A→G |
V127A (GTG→GCG) |
uhpC ← |
UhpC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,845,875 | 0 | A | G | 99.6%
| 851.6
/ ‑5.2
| 249 | V127A (GTG→GCG) | uhpC | UhpC |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (114/134); total (114/135) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.73e-01 |
Only 100 of 257 total aligned reads displayed.
CACCAACCGCCGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCACCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTATCCCCATAAAA > NC_000913/3845785‑3845964
|
caccaACCGCCGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGcc > 1:6447046/1‑93 (MQ=255)
caccaACCGCCGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGcc > 2:3060700/1‑93 (MQ=255)
accaACCGCCGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGccc > 2:349523/1‑93 (MQ=255)
aaCCGCCGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCaga < 2:6352669/93‑1 (MQ=255)
aaCAGCCGCGCGCGGTACGTGAATACCAGGCCGTTAACAGCCGCGCACGCCCCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCaga < 1:191867/93‑1 (MQ=255)
aCCGCTGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCGGCCCTGGAAAAAGGCGTTCAGCGCCCagag < 2:1068537/93‑1 (MQ=255)
aCCGCCGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCagag > 2:2244026/1‑93 (MQ=255)
aCCGCCGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCagag > 2:6068122/1‑93 (MQ=255)
ccgccgCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGc > 2:1163468/1‑93 (MQ=255)
gccgcGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCAc < 1:2723953/93‑1 (MQ=255)
gccgcGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCAc < 2:3705301/93‑1 (MQ=255)
gccgcGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCAc < 1:3227565/93‑1 (MQ=255)
cgggcTCGCTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACgg < 1:3906681/90‑1 (MQ=255)
gcgcTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGc < 2:1988099/93‑1 (MQ=255)
ccgcTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGc < 1:3720128/92‑1 (MQ=255)
cTCGGTACTTGAATACCAGGCCGTTAACAGACGCG‑ACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAAc < 1:61679/93‑1 (MQ=255)
cTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCaaa > 2:2283670/1‑93 (MQ=255)
tCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAAc < 1:5836037/93‑1 (MQ=255)
tCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAAc > 1:1862934/1‑93 (MQ=255)
tCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAAACCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAAc > 1:2166782/1‑93 (MQ=255)
gTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGcc > 1:120964/1‑93 (MQ=255)
gTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGcc > 1:3269490/1‑93 (MQ=255)
gTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGcc > 2:5714478/1‑93 (MQ=255)
tACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGccc < 2:4952997/93‑1 (MQ=255)
cGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCACAGAGCACGGCAAACGCCCAt < 1:4094430/93‑1 (MQ=255)
gTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATa > 2:3981873/1‑93 (MQ=255)
gTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATa < 2:2660613/93‑1 (MQ=255)
gTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATa < 1:1350409/93‑1 (MQ=255)
aaTACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCg > 1:3345533/1‑93 (MQ=255)
aaTACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCg > 2:6101992/1‑93 (MQ=255)
aaTACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCg < 2:242230/93‑1 (MQ=255)
aaTACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCg > 1:266103/1‑93 (MQ=255)
aTACCAGGCCGTTAACGGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGa < 2:4469949/93‑1 (MQ=255)
aTACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGa > 1:4641675/1‑93 (MQ=255)
tACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGAc < 2:169392/93‑1 (MQ=255)
tACCAGGCCGTTAACAGACGCGAACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGAc > 1:637584/1‑93 (MQ=255)
aCCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACg < 1:851602/93‑1 (MQ=255)
ccAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGt < 1:2339754/93‑1 (MQ=255)
cAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTc < 2:4593347/93‑1 (MQ=255)
aGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCg > 1:2553669/1‑93 (MQ=255)
ggCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCga < 2:3780689/93‑1 (MQ=255)
gCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCgag > 1:1086423/1‑93 (MQ=255)
ccGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCgaga < 2:3250615/93‑1 (MQ=255)
ccGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCgaga > 2:3560790/1‑93 (MQ=255)
gTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAg < 1:3494467/93‑1 (MQ=255)
tAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGcc > 1:3313446/1‑93 (MQ=255)
aaCAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCa < 1:1003842/93‑1 (MQ=255)
aaCAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCa < 2:919927/93‑1 (MQ=255)
cAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCaaa < 2:5566330/93‑1 (MQ=255)
cAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCaaa < 2:4902505/93‑1 (MQ=255)
aGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAAc < 1:4736097/93‑1 (MQ=255)
gACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACa < 2:5675573/93‑1 (MQ=255)
gACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACa < 2:5610718/93‑1 (MQ=255)
gACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACa < 2:5058250/93‑1 (MQ=255)
cgcACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAAt > 1:445331/1‑93 (MQ=255)
gcACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATg > 2:2908796/1‑93 (MQ=255)
cacacaCCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGt > 1:6214538/1‑93 (MQ=255)
cacacaCCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGt > 1:4857383/1‑93 (MQ=255)
acacacCGGTGAACCCCAGCCCTGGGAAAAGGGGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACTGCGAGAAGCCAAACAGAATGtt > 2:2091510/1‑93 (MQ=255)
acacacCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGtt > 2:2151826/1‑93 (MQ=255)
acacacCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGtt < 2:5912161/93‑1 (MQ=255)
acacacCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGtt < 2:2738834/93‑1 (MQ=255)
acacacCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGtt < 2:5462010/93‑1 (MQ=255)
acacacCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGtt < 1:3253601/93‑1 (MQ=255)
cacCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGAt > 1:3442247/1‑93 (MQ=255)
ccGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATaa > 1:1509066/1‑93 (MQ=255)
ggTGAACCCCAGCCGTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATg < 1:751311/93‑1 (MQ=255)
gAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATTGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGccc > 2:5370433/1‑93 (MQ=255)
gAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGccc < 1:5824965/93‑1 (MQ=255)
gAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGccc < 1:5482249/93‑1 (MQ=255)
aCCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGt > 2:3879449/1‑93 (MQ=255)
cccAGCCCTCGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTgg < 2:1276791/93‑1 (MQ=255)
ccAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGc > 2:333849/1‑93 (MQ=255)
ccAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGc < 2:3572790/93‑1 (MQ=255)
cAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCg < 2:1351825/93‑1 (MQ=255)
aGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGa < 1:1476064/93‑1 (MQ=255)
gCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGAt < 1:5268362/93‑1 (MQ=255)
gCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGAt > 1:5631722/1‑93 (MQ=255)
gCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATCCCCGTGGCGAt > 1:2142672/1‑93 (MQ=255)
cTGGAAAGAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAg > 1:5214804/1‑93 (MQ=255)
cTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAg > 2:4144935/1‑93 (MQ=255)
cTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAg < 1:5551115/93‑1 (MQ=255)
ggAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGcc > 2:2037019/1‑93 (MQ=255)
ggAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGcc < 2:3230948/93‑1 (MQ=255)
aaaaGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTa < 2:5263583/93‑1 (MQ=255)
aaaaGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTa > 1:519065/1‑93 (MQ=255)
aaaGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTAt > 1:5426899/1‑93 (MQ=255)
aaGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTATc < 1:6022272/93‑1 (MQ=255)
aaGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTATc > 1:3402855/1‑93 (MQ=255)
aGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTATcc < 2:719177/93‑1 (MQ=255)
aGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTATcc > 1:4663006/1‑93 (MQ=255)
ggCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTATccc > 1:968661/1‑93 (MQ=255)
ggCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTATccc < 2:653568/93‑1 (MQ=255)
ggCGCTCAGCGCCCAGAGCGCGGAAAACGCCCATAGCGACGTCGAGAAGCAAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTATccc < 1:4267123/93‑1 (MQ=255)
gCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTATcccc > 1:2026102/1‑93 (MQ=255)
cGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTATCCCCa > 2:6227423/1‑93 (MQ=255)
gTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTATCCCCAt < 1:2961502/93‑1 (MQ=255)
gTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTATCCCCAt < 1:3087898/93‑1 (MQ=255)
ttCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTATCCCCATa > 2:5193568/1‑93 (MQ=255)
tCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTATCCCCATaa > 2:3375096/1‑93 (MQ=255)
|
CACCAACCGCCGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCACCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTATCCCCATAAAA > NC_000913/3845785‑3845964
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCCCACCAACCGCCGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCACCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTATCCCCATAAAATAAC > NC_000913/3845782‑3845968
|
GCCCACCAACCGCCGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCG < SRR4302534.4532533/94‑1 (MQ=60)
CCACCAACCGCCGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCC > SRR4302534.6620784/1‑94 (MQ=60)
CACCAACCGCCGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCC > SRR4302534.3500480/1‑94 (MQ=60)
CAACCGCCGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGA > SRR4302534.5209472/1‑94 (MQ=60)
AACCGCCGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAG < SRR4302534.4769485/94‑1 (MQ=60)
AACCGCCGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAG < SRR4302534.6540708/94‑1 (MQ=60)
AACCGCCGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAG < SRR4302534.5382610/94‑1 (MQ=60)
AACAGCCGCGCGCGGTACGTGAATACCAGGCCGTTAACAGCCGCGCACGCCCCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAG < SRR4302534.196887/94‑1 (MQ=60)
CCGCCGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCGCAGAGCA > SRR4302534.2214696/1‑94 (MQ=60)
GCCGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACG < SRR4302534.4638006/94‑1 (MQ=60)
GCCGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACG < SRR4302534.3319316/94‑1 (MQ=60)
GCCGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACG < SRR4302534.3313318/94‑1 (MQ=60)
GCCGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACG < SRR4302534.2795821/94‑1 (MQ=60)
CGGGCTCGCTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGC < SRR4302534.4011452/94‑1 (MQ=60)
CGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGC > SRR4302534.5344619/1‑94 (MQ=60)
GCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCA < SRR4302534.4855371/94‑1 (MQ=60)
CCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCA < SRR4302534.3820123/94‑1 (MQ=60)
CGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAA > SRR4302534.3717958/1‑94 (MQ=60)
CTCGGTACTTGAATACCAGGCCGTTAACAGACGCG‑ACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACG < SRR4302534.63356/94‑1 (MQ=60)
CTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAAC > SRR4302534.1911425/1‑94 (MQ=60)
CTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAAC > SRR4302534.633899/1‑94 (MQ=60)
CTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAAACCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAAC > SRR4302534.2224012/1‑94 (MQ=60)
TCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACG < SRR4302534.5994476/94‑1 (MQ=60)
CGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGC < SRR4302534.5951847/94‑1 (MQ=60)
GGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCC > SRR4302534.5482393/1‑94 (MQ=60)
GGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCC > SRR4302534.3356576/1‑94 (MQ=60)
GGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCC > SRR4302534.124167/1‑94 (MQ=60)
GTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCC > SRR4302534.3426041/1‑94 (MQ=60)
TACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCA < SRR4302534.196776/94‑1 (MQ=60)
TACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCA > SRR4302534.963887/1‑94 (MQ=60)
CGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCACAGAGCACGGCAAACGCCCATA < SRR4302534.4204464/94‑1 (MQ=60)
GTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAG < SRR4302534.1386007/94‑1 (MQ=60)
TGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCtttttc < SRR4302534.1308437/94‑7 (MQ=60)
GAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCG < SRR4302534.3435338/94‑1 (MQ=60)
GAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCG < SRR4302534.3083331/94‑1 (MQ=60)
GAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCG > SRR4302534.3435087/1‑94 (MQ=60)
GAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCG > SRR4302534.273006/1‑94 (MQ=60)
AATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGA > SRR4302534.4767658/1‑94 (MQ=60)
ATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGAC < SRR4302534.5672345/94‑1 (MQ=60)
ATACCAGGCCGTTAACAGACGCGAACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGAC > SRR4302534.653060/1‑94 (MQ=60)
TACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACG > SRR4302534.4936229/1‑94 (MQ=60)
TACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACG > SRR4302534.4410097/1‑94 (MQ=60)
ACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGT > SRR4302534.2326186/1‑94 (MQ=60)
ACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGT < SRR4302534.873074/94‑1 (MQ=60)
ACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCACCCAGAGCACGGCAAACGCCCATAGCGACGT < SRR4302534.4018699/94‑1 (MQ=60)
CCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTC < SRR4302534.2401845/94‑1 (MQ=60)
CAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCG > SRR4302534.2621365/1‑94 (MQ=60)
CAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCG < SRR4302534.2156601/94‑1 (MQ=60)
CAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCG < SRR4302534.2410594/94‑1 (MQ=60)
GGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAG > SRR4302534.1114680/1‑94 (MQ=60)
GCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGA > SRR4302534.3087279/1‑94 (MQ=60)
CCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAA < SRR4302534.2224986/94‑1 (MQ=60)
CGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAG < SRR4302534.3452950/94‑1 (MQ=60)
GTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGC < SRR4302534.3588422/94‑1 (MQ=60)
GTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGC > SRR4302534.6524045/1‑94 (MQ=60)
GTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGC > SRR4302534.3503506/1‑94 (MQ=60)
TTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCC > SRR4302534.3401962/1‑94 (MQ=60)
TAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCA < SRR4302534.6595882/94‑1 (MQ=60)
TAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCA > SRR4302534.1613741/1‑94 (MQ=60)
TAACAGACGCGCACACACAGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCA < SRR4302534.5607790/94‑1 (MQ=60)
AACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAA > SRR4302534.2774310/1‑94 (MQ=60)
AACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAA < SRR4302534.1029595/94‑1 (MQ=60)
CAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAAC > SRR4302534.3184341/1‑94 (MQ=60)
CAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAAC > SRR4302534.763664/1‑94 (MQ=60)
CAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAAC > SRR4302534.6211654/1‑94 (MQ=60)
TGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACA > SRR4302534.4802094/1‑94 (MQ=60)
AGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACA > SRR4302534.1416940/1‑94 (MQ=60)
AGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACA < SRR4302534.4864681/94‑1 (MQ=60)
GACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAG < SRR4302534.667474/94‑1 (MQ=60)
GACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAG < SRR4302534.4491636/94‑1 (MQ=60)
GCGCGCACACACCGGTGACCCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGA < SRR4302534.851559/94‑1 (MQ=60)
ACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGA > SRR4302534.1188867/1‑94 (MQ=60)
ACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGA > SRR4302534.1232317/1‑94 (MQ=60)
CGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAA < SRR4302534.890681/94‑1 (MQ=60)
CGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAA < SRR4302534.569892/94‑1 (MQ=60)
GCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAAT < SRR4302534.5791105/94‑1 (MQ=60)
GCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAAT > SRR4302534.456628/1‑94 (MQ=60)
CGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATG < SRR4302534.5634212/94‑1 (MQ=60)
CGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATG < SRR4302534.3366164/94‑1 (MQ=60)
GCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGT > SRR4302534.6383393/1‑94 (MQ=60)
GCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGT > SRR4302534.4989167/1‑94 (MQ=60)
CACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTT > SRR4302534.5987660/1‑94 (MQ=60)
ACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTG < SRR4302534.6114824/94‑1 (MQ=60)
ACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTG < SRR4302534.3340258/94‑1 (MQ=60)
ACACCGGTGACCCCCAGCCCTGGAAAAAGGCCTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGAT < SRR4302534.1582793/94‑1 (MQ=60)
ACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGAT > SRR4302534.3534765/1‑94 (MQ=60)
ACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGAT < SRR4302534.2798408/94‑1 (MQ=60)
CACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATA < SRR4302534.1297919/94‑1 (MQ=60)
ACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAA > SRR4302534.1548748/1‑94 (MQ=60)
ACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAA > SRR4302534.5561050/1‑94 (MQ=60)
GGTGAACCCCAGCCGTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGC < SRR4302534.769926/94‑1 (MQ=60)
GGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGC > SRR4302534.2015023/1‑94 (MQ=60)
TGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCC > SRR4302534.2642208/1‑94 (MQ=60)
TGAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCC > SRR4302534.2024487/1‑94 (MQ=60)
GAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCG < SRR4302534.5630089/94‑1 (MQ=60)
GAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCG < SRR4302534.5983073/94‑1 (MQ=60)
GAACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCG > SRR4302534.3555747/1‑94 (MQ=60)
AACCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGT > SRR4302534.3320104/1‑94 (MQ=60)
CCCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAGCGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGG < SRR4302534.270559/94‑1 (MQ=60)
CCCAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGC > SRR4302534.3888434/1‑94 (MQ=60)
CAGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGA < SRR4302534.1095782/94‑1 (MQ=60)
CAGCCCTGGAAAAAGGCGTTCAGCGACCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGA > SRR4302534.3657036/1‑94 (MQ=60)
AGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGAT > SRR4302534.5784142/1‑94 (MQ=60)
AGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGAT < SRR4302534.1514886/94‑1 (MQ=60)
AGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGAT < SRR4302534.33763/94‑1 (MQ=60)
AGCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATCCCCGTGGCGAT > SRR4302534.2199180/1‑94 (MQ=60)
GCCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATA < SRR4302534.5410677/94‑1 (MQ=60)
CCCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAA < SRR4302534.1401879/94‑1 (MQ=60)
CCTGGAAAGAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAG > SRR4302534.5355547/1‑94 (MQ=60)
CCTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAG > SRR4302534.6194909/1‑94 (MQ=60)
CTGGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGC < SRR4302534.5700974/94‑1 (MQ=60)
GGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGGTAATGCCCGTGGCGATAAGCCC > SRR4302534.4283376/1‑94 (MQ=60)
GGAAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCC > SRR4302534.4665817/1‑94 (MQ=60)
AAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTA > SRR4302534.531970/1‑94 (MQ=60)
AAAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTA < SRR4302534.2840558/94‑1 (MQ=60)
AAAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTAT > SRR4302534.5572972/1‑94 (MQ=60)
AAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTATC > SRR4302534.4090065/1‑94 (MQ=60)
AAAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTATC > SRR4302534.3494224/1‑94 (MQ=60)
AAGGCGTTCAGCGCCCAGAGCACGGCAAGCGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTATCC > SRR4302534.3341734/1‑94 (MQ=60)
AAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTATCC < SRR4302534.6185946/94‑1 (MQ=60)
AAGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTATCC > SRR4302534.4789612/1‑94 (MQ=60)
AGGCGTTCAGCGCCCAGAGCACGGCAAACGTCCATAGCGATGTCGAGAAGCCAAACAGAATGTTGATAATGACCGTGGCGATAAGGCCTATCCC > SRR4302534.4317396/1‑94 (MQ=60)
AGGCGTTCAGCGCCCAGAGCACGGCAAACGCCGATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTATCCC > SRR4302534.5287085/1‑94 (MQ=60)
AGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTATCCC < SRR4302534.604142/94‑1 (MQ=60)
AGGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTATCCC > SRR4302534.993343/1‑94 (MQ=60)
GGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTATCCCC > SRR4302534.2079103/1‑94 (MQ=60)
GGCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTATCCCC < SRR4302534.5370767/94‑1 (MQ=60)
GGCGCTCAGCGCCCAGAGCGCGGAAAACGCCCATAGCGACGTCGAGAAGCAAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTATCCCC < SRR4302534.4382404/94‑1 (MQ=60)
GCGTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTATCCCCA < SRR4302534.1531165/94‑1 (MQ=60)
GTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTATCCCCATA < SRR4302534.3169063/94‑1 (MQ=60)
GTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTATCCCCATA < SRR4302534.3039081/94‑1 (MQ=60)
GTTCAGCGCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTATCCCCATA < SRR4302534.2123385/94‑1 (MQ=60)
GCCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTATCCCCATAAAATAAC < SRR4302534.6233095/94‑1 (MQ=60)
|
GCCCACCAACCGCCGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACCGGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCACCCAGAGCACGGCAAACGCCCATAGCGACGTCGAGAAGCCAAACAGAATGTTGATAATGCCCGTGGCGATAAGCCCTATCCCCATAAAATAAC > NC_000913/3845782‑3845968
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
