Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,853,551	T→C	Q16R (CAG→CGG)	yidG ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,853,551	0	T	C	100.0%	788.5 / NA	227	Q16R (CAG→CGG)	yidG	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (113/114); total (113/114)

Only 100 of 238 total aligned reads displayed.

GCCTGGTGCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATAT  >  NC_000913/3853461‑3853640

gCCTGGTGCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGc                                                                                         <  2:3161854/93‑1 (MQ=255)

 ccTGGTGCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCa                                                                                        >  1:3606628/1‑93 (MQ=255)

  cTGGTGCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAg                                                                                       <  2:2388950/93‑1 (MQ=255)

  cTGGTGCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAg                                                                                       <  2:3628312/93‑1 (MQ=255)

  cTGGTGCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAg                                                                                       <  1:3437467/93‑1 (MQ=255)

   tGGTGCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCCGCCGCAGt                                                                                      >  1:5000126/1‑93 (MQ=255)

     gTGCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTcc                                                                                    <  1:1769419/93‑1 (MQ=255)

      tGCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCt                                                                                   >  2:5342919/1‑93 (MQ=255)

      tGCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCt                                                                                   <  2:31791/93‑1 (MQ=255)

       gCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTg                                                                                  >  2:4912404/1‑93 (MQ=255)

       gCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTg                                                                                  <  1:630584/93‑1 (MQ=255)

        ccAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTgg                                                                                 >  2:4476177/1‑93 (MQ=255)

        ccAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTgg                                                                                 >  2:1240735/1‑93 (MQ=255)

         cAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTggg                                                                                >  1:3368016/1‑93 (MQ=255)

         cAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCATAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTggg                                                                                <  2:3982397/93‑1 (MQ=255)

          aattGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGt                                                                               >  1:6373842/3‑93 (MQ=255)

          aGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGt                                                                               >  2:2729917/1‑93 (MQ=255)

           gTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTc                                                                              >  1:561328/1‑93 (MQ=255)

           gTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTc                                                                              >  2:2479323/1‑93 (MQ=255)

            ttGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCg                                                                             <  2:2830361/93‑1 (MQ=255)

            ttGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCg                                                                             >  1:5150517/1‑93 (MQ=255)

            ttGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCg                                                                             <  1:744008/93‑1 (MQ=255)

             tgtgTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCgg                                                                            <  2:5132064/93‑1 (MQ=255)

                 tttGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAAt                                                                        <  2:1507782/93‑1 (MQ=255)

                 tttGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAAt                                                                        >  2:3304574/1‑93 (MQ=255)

                  ttGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATg                                                                       >  2:4185374/1‑93 (MQ=255)

                     aTAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGt                                                                    <  1:611471/93‑1 (MQ=255)

                     aTAGCCAACGCCAGCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGt                                                                    <  1:1916476/93‑1 (MQ=255)

                      tAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTc                                                                   <  2:136068/93‑1 (MQ=255)

                      tAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTc                                                                   <  1:5431404/93‑1 (MQ=255)

                      tAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTc                                                                   >  1:6175220/1‑93 (MQ=255)

                       aGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCt                                                                  <  1:6462732/93‑1 (MQ=255)

                       aGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCt                                                                  <  1:2424428/93‑1 (MQ=255)

                        gCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTg                                                                 >  1:2359389/1‑93 (MQ=255)

                        gCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTg                                                                 <  2:1682359/93‑1 (MQ=255)

                           caCGCCATCAACGCGCCGTAGCCCAGCATGGTAGGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCt                                                              <  2:545426/92‑1 (MQ=255)

                           aaCGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCt                                                              >  1:4060569/1‑93 (MQ=255)

                            aCGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCtt                                                             <  2:2143321/93‑1 (MQ=255)

                            aCGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCtt                                                             >  2:732413/1‑93 (MQ=255)

                                cATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCg                                                         >  2:4392934/1‑93 (MQ=255)

                                  tCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGc                                                       >  2:796602/1‑93 (MQ=255)

                                   cAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCt                                                      <  1:2230468/93‑1 (MQ=255)

                                    aaCGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTa                                                     <  2:3615928/93‑1 (MQ=255)

                                    aaCGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTa                                                     >  2:6084827/1‑93 (MQ=255)

                                      cgcgCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATc                                                   <  2:2626480/93‑1 (MQ=255)

                                      cgcgCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATc                                                   <  1:4267635/93‑1 (MQ=255)

                                      cgcgCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATc                                                   <  1:5750158/93‑1 (MQ=255)

                                       gcgtCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATcc                                                  <  2:5319814/93‑1 (MQ=255)

                                        cgcCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCg                                                 >  1:2777844/1‑93 (MQ=255)

                                         gcCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCgg                                                <  2:6109749/93‑1 (MQ=255)

                                         gcCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCgg                                                <  1:1648123/93‑1 (MQ=255)

                                          ccGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGc                                               >  2:5964480/1‑93 (MQ=255)

                                          ccGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGc                                               <  2:3235680/93‑1 (MQ=255)

                                           cGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCa                                              <  2:2205305/93‑1 (MQ=255)

                                            gTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCAt                                             >  2:5500094/1‑93 (MQ=255)

                                             tAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATa                                            >  2:5653813/1‑93 (MQ=255)

                                             tAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATa                                            >  2:605217/1‑93 (MQ=255)

                                             tAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATa                                            >  2:423947/1‑93 (MQ=255)

                                              aGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATac                                           >  1:1063086/1‑93 (MQ=255)

                                              aGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATac                                           <  2:6132508/93‑1 (MQ=255)

                                               gCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATaca                                          >  2:134387/1‑93 (MQ=255)

                                                cccAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATacaa                                         <  2:5417140/93‑1 (MQ=255)

                                                  cAGCATGGTACGAAACCACCCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATacaaca                                       <  2:466982/93‑1 (MQ=255)

                                                     cATGGTCCGAGACCACGCCAGTGATTTCCGCTCCGTCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCa                                    <  1:5322013/93‑1 (MQ=255)

                                                      aTGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAg                                   >  2:4577517/1‑93 (MQ=255)

                                                      aTGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAg                                   >  1:5971779/1‑93 (MQ=255)

                                                      aTGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAg                                   <  1:580466/93‑1 (MQ=255)

                                                        ggTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTc                                 <  1:4118288/93‑1 (MQ=255)

                                                         gTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTcc                                >  1:3835253/1‑93 (MQ=255)

                                                          tACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTccc                               <  1:1188357/93‑1 (MQ=255)

                                                           aCGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCa                              <  1:5838132/93‑1 (MQ=255)

                                                           aCGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCa                              <  1:2766372/93‑1 (MQ=255)

                                                           aCGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCa                              <  1:5036171/93‑1 (MQ=255)

                                                            cGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCAt                             <  2:3943052/93‑1 (MQ=255)

                                                              aaaCCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATaa                           >  2:2542761/1‑93 (MQ=255)

                                                              aaaCCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATaa                           >  1:1254364/1‑93 (MQ=255)

                                                              aaaCCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATaa                           >  1:3506563/1‑93 (MQ=255)

                                                                aCCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACg                         <  1:5183062/93‑1 (MQ=255)

                                                                aCCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACg                         >  2:4938197/1‑93 (MQ=255)

                                                                aCCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACg                         >  2:3000983/1‑93 (MQ=255)

                                                                  cACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGAt                       >  2:1048156/1‑93 (MQ=255)

                                                                  cACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCAGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGAt                       <  2:5023222/93‑1 (MQ=255)

                                                                   aCGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATc                      <  1:982094/93‑1 (MQ=255)

                                                                    cGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCa                     >  1:429798/1‑93 (MQ=255)

                                                                     gCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCAc                    <  1:5138309/93‑1 (MQ=255)

                                                                      ccAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCAcc                   <  2:3559498/93‑1 (MQ=255)

                                                                       cAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCg                  >  1:4546567/1‑93 (MQ=255)

                                                                         gTGATGTGCGCTGCGGCCGCAGTCCTGGTTCGGCAATGCGTCTGGCTTTGCGGCTATCCGTCATACAACACCAGTCCCATAACGATCACCGcc                <  1:2927374/93‑1 (MQ=255)

                                                                           gATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCAc              <  1:4751226/93‑1 (MQ=255)

                                                                           gATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCAc              <  1:3657655/93‑1 (MQ=255)

                                                                              gtgCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGAc           <  2:2882202/93‑1 (MQ=255)

                                                                               tgCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGAcc          <  1:1514325/93‑1 (MQ=255)

                                                                                   cTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCa      >  2:1969664/1‑93 (MQ=255)

                                                                                    tCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCaa     >  1:451150/1‑93 (MQ=255)

                                                                                    tCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCaa     <  2:3452596/93‑1 (MQ=255)

                                                                                    tCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCaa     >  2:4752986/1‑93 (MQ=255)

                                                                                    tCCGGCCCCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCaa     >  1:5896959/1‑93 (MQ=255)

                                                                                     ccGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAat    <  2:1671255/93‑1 (MQ=255)

                                                                                       ggCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAatat  <  1:5486541/93‑1 (MQ=255)

                                                                                       ggCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAatat  >  1:2110039/1‑93 (MQ=255)

GCCTGGTGCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATAT  >  NC_000913/3853461‑3853640

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCCGCCTGGTGCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAG  >  NC_000913/3853458‑3853644

CCCGCCTGGTGCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCC                                                                                               <  SRR4302534.539329/94‑1 (MQ=60)

 CCGCCTGGTGCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCG                                                                                              <  SRR4302534.5833657/94‑1 (MQ=60)

 CCGCCTGGTGCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCG                                                                                              >  SRR4302534.2331768/1‑94 (MQ=60)

  CGCCTGGTGCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGC                                                                                             >  SRR4302534.6394195/1‑94 (MQ=60)

   GCCTGGTGCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCA                                                                                            <  SRR4302534.4381932/94‑1 (MQ=60)

   GCCTGGTGCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCA                                                                                            >  SRR4302534.3703618/1‑94 (MQ=60)

    CCTGGTGCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAG                                                                                           >  SRR4302534.4325974/1‑94 (MQ=60)

    CCTGGTGCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAG                                                                                           <  SRR4302534.5428941/94‑1 (MQ=60)

     CTGGTGCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGT                                                                                          <  SRR4302534.3529845/94‑1 (MQ=60)

     CTGGTGCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCCGCCGCAGT                                                                                          >  SRR4302534.5135313/1‑94 (MQ=60)

        GTGCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCT                                                                                       <  SRR4302534.2204742/94‑1 (MQ=60)

        GTGCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCT                                                                                       <  SRR4302534.1815369/94‑1 (MQ=60)

         TGCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTG                                                                                      <  SRR4302534.1207138/94‑1 (MQ=60)

          GCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGG                                                                                     <  SRR4302534.645879/94‑1 (MQ=60)

           CCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGG                                                                                    >  SRR4302534.3458245/1‑94 (MQ=60)

            CAATTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGT                                                                                   >  SRR4302534.6545938/1‑94 (MQ=60)

             AGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTC                                                                                  <  SRR4302534.6582580/94‑1 (MQ=60)

             AGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTC                                                                                  >  SRR4302534.575140/1‑94 (MQ=60)

             AGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTC                                                                                  <  SRR4302534.2913738/94‑1 (MQ=60)

              GTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCG                                                                                 <  SRR4302534.3514623/94‑1 (MQ=60)

              GTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCG                                                                                 >  SRR4302534.5289464/1‑94 (MQ=60)

              GTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCG                                                                                 <  SRR4302534.1320492/94‑1 (MQ=60)

              GTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCACAGCATGGTACGAAACCACGCCAGTGATGTGCGCACCGGCCGCAGTCCTGGGTCG                                                                                 <  SRR4302534.6484827/94‑1 (MQ=60)

               TTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGG                                                                                <  SRR4302534.762446/94‑1 (MQ=60)

                   GTTTGATAGGCAACGCCAGCAACGCGCCGTGGCCCAGCATGGGACGAAACCACGCCAGTGGTGTGCGCTGCGGCCGCAGTCCTGGGTCGGCAAT                                                                            <  SRR4302534.3137978/94‑1 (MQ=60)

                   GTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAAT                                                                            >  SRR4302534.3577804/1‑94 (MQ=60)

                    TTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATG                                                                           >  SRR4302534.3731741/1‑94 (MQ=60)

                     TTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGC                                                                          >  SRR4302534.5737305/1‑94 (MQ=60)

                        ATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTC                                                                       <  SRR4302534.626329/94‑1 (MQ=60)

                        ATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTC                                                                       >  SRR4302534.6343251/1‑94 (MQ=60)

                        ATAGCCAACGCCAGCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTC                                                                       <  SRR4302534.1966524/94‑1 (MQ=60)

                         TAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCT                                                                      >  SRR4302534.26317/1‑94 (MQ=60)

                         TAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCT                                                                      <  SRR4302534.5577619/94‑1 (MQ=60)

                         TAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCT                                                                      >  SRR4302534.719862/1‑94 (MQ=60)

                          AGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTG                                                                     <  SRR4302534.527714/94‑1 (MQ=60)

                          AGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTG                                                                     >  SRR4302534.3999167/1‑94 (MQ=60)

                          AGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTG                                                                     <  SRR4302534.2488896/94‑1 (MQ=60)

                          AGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTG                                                                     >  SRR4302534.2422022/1‑94 (MQ=60)

                          AGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTG                                                                     >  SRR4302534.964825/1‑94 (MQ=60)

                          AGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTG                                                                     <  SRR4302534.6636799/94‑1 (MQ=60)

                             CAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCT                                                                  >  SRR4302534.2336434/1‑94 (MQ=60)

                             CAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCT                                                                  >  SRR4302534.4169486/1‑94 (MQ=60)

                               ACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTT                                                                >  SRR4302534.2166026/1‑94 (MQ=60)

                                 CCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCTCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGC                                                              <  SRR4302534.3657658/94‑1 (MQ=60)

                                     TCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCT                                                          >  SRR4302534.5599158/1‑94 (MQ=60)

                                     TCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCT                                                          >  SRR4302534.3026667/1‑94 (MQ=60)

                                      CAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTA                                                         <  SRR4302534.2289541/94‑1 (MQ=60)

                                       AACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTAT                                                        >  SRR4302534.1236894/1‑94 (MQ=60)

                                        ACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATC                                                       >  SRR4302534.6120603/1‑94 (MQ=60)

                                         CGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCC                                                      >  SRR4302534.4471960/1‑94 (MQ=60)

                                         CGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCC                                                      <  SRR4302534.4382938/94‑1 (MQ=60)

                                         CGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCC                                                      <  SRR4302534.5906081/94‑1 (MQ=60)

                                          GCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCG                                                     <  SRR4302534.1024937/94‑1 (MQ=60)

                                          GCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCG                                                     >  SRR4302534.2850916/1‑94 (MQ=60)

                                           CGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGG                                                    <  SRR4302534.6634055/94‑1 (MQ=60)

                                           CGCCGTAGCCCAGCATGGAACGAAACCACGCCAGTGATGTGGGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGCCTGGCTTTGCGGCTATCCGG                                                    >  SRR4302534.3864400/1‑94 (MQ=60)

                                            GCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGC                                                   <  SRR4302534.5948472/94‑1 (MQ=60)

                                            GCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGC                                                   <  SRR4302534.6279620/94‑1 (MQ=60)

                                            GCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGC                                                   <  SRR4302534.1691082/94‑1 (MQ=60)

                                               GTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATA                                                >  SRR4302534.5092997/1‑94 (MQ=60)

                                                TAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATAC                                               >  SRR4302534.1090645/1‑94 (MQ=60)

                                                 AGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACA                                              <  SRR4302534.1762507/94‑1 (MQ=60)

                                                     CAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACAC                                          >  SRR4302534.5309008/1‑94 (MQ=60)

                                                       GCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCA                                        >  SRR4302534.195852/1‑94 (MQ=60)

                                                       GCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCA                                        <  SRR4302534.441046/94‑1 (MQ=60)

                                                       GCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCA                                        <  SRR4302534.4651774/94‑1 (MQ=60)

                                                        CATGGTCCGAGACCACGCCAGTGATTTCCGCTCCGTCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAG                                       <  SRR4302534.5465553/94‑1 (MQ=60)

                                                        CATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAG                                       >  SRR4302534.6133972/1‑94 (MQ=60)

                                                         ATGGTACGAAACCACGCCAGTGATGTGCGCTCCTGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATATAACACCAGT                                      >  SRR4302534.6332335/1‑94 (MQ=60)

                                                         ATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGT                                      <  SRR4302534.161413/94‑1 (MQ=60)

                                                         ATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGT                                      <  SRR4302534.594684/94‑1 (MQ=60)

                                                         ATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGT                                      >  SRR4302534.5678513/1‑94 (MQ=60)

                                                         ATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGT                                      >  SRR4302534.3350532/1‑94 (MQ=60)

                                                         ATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGGCCTGGGTCGGCACTGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGC                                      >  SRR4302534.5993498/1‑94 (MQ=60)

                                                           GGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCC                                    >  SRR4302534.4690137/1‑94 (MQ=60)

                                                           GGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCC                                    >  SRR4302534.3938247/1‑94 (MQ=60)

                                                           GGTACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCC                                    <  SRR4302534.4229098/94‑1 (MQ=60)

                                                             gagGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCA                                  <  SRR4302534.2801384/91‑1 (MQ=60)

                                                             TACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCA                                  <  SRR4302534.1219606/94‑1 (MQ=60)

                                                             TACGAAACCACGCCAGTGAGGTGCGCTCCGGTCGCAGTCCTGGGCCGGCACTGCGTCTGGCTTTGCGGCTATCCGGtttacaacagcagttcct                                  >  SRR4302534.5026396/1‑76 (MQ=60)

                                                              ACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCAT                                 <  SRR4302534.5172200/94‑1 (MQ=60)

                                                              ACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCAT                                 <  SRR4302534.5996621/94‑1 (MQ=60)

                                                              ACGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCAT                                 <  SRR4302534.2839196/94‑1 (MQ=60)

                                                               CGAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATA                                <  SRR4302534.4389107/94‑1 (MQ=60)

                                                                GAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAA                               >  SRR4302534.3600893/1‑94 (MQ=60)

                                                                GAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAA                               >  SRR4302534.1287425/1‑94 (MQ=60)

                                                                GAAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTACTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAA                               >  SRR4302534.6082817/1‑94 (MQ=60)

                                                                 AAACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAAC                              >  SRR4302534.4893828/1‑94 (MQ=60)

                                                                  AACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACG                             >  SRR4302534.1416127/1‑94 (MQ=60)

                                                                   ACCACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGA                            <  SRR4302534.5322755/94‑1 (MQ=60)

                                                                     CACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATC                          >  SRR4302534.2051377/1‑94 (MQ=60)

                                                                     CACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATC                          >  SRR4302534.2842541/1‑94 (MQ=60)

                                                                     CACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATC                          <  SRR4302534.3803254/94‑1 (MQ=60)

                                                                     CACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATC                          <  SRR4302534.524101/94‑1 (MQ=60)

                                                                      ACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCA                         <  SRR4302534.1007163/94‑1 (MQ=60)

                                                                      ACGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCA                         >  SRR4302534.440767/1‑94 (MQ=60)

                                                                       CGCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCAC                        >  SRR4302534.1871892/1‑94 (MQ=60)

                                                                       CGCCAGTGATGTGCGCTCCGGCCGCAGTCCTCGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCAC                        <  SRR4302534.5144624/94‑1 (MQ=60)

                                                                        GCCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACC                       <  SRR4302534.5276997/94‑1 (MQ=60)

                                                                         CCAGTGATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCG                      >  SRR4302534.4669826/1‑94 (MQ=60)

                                                                           AGTTATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCC                    <  SRR4302534.6031556/94‑1 (MQ=60)

                                                                            GTGATGTGCGCTGCGGCCGCAGTCCTGGTTCGGCAATGCGTCTGGCTTTGCGGCTATCCGTCATACAACACCAGTCCCATAACGATCACCGCCA                   <  SRR4302534.3004237/94‑1 (MQ=60)

                                                                              GATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACG                 <  SRR4302534.3755961/94‑1 (MQ=60)

                                                                              GATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACG                 <  SRR4302534.4880203/94‑1 (MQ=60)

                                                                               ATGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGA                <  SRR4302534.5827975/94‑1 (MQ=60)

                                                                                TGTGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGAC               <  SRR4302534.5554303/94‑1 (MQ=60)

                                                                                TGTGCCCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGAC               <  SRR4302534.3567727/94‑1 (MQ=60)

                                                                                  TGCGCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCA             <  SRR4302534.1554123/94‑1 (MQ=60)

                                                                                     GGTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGTCTATCCGGCATCCAACACCAGTCCCATAACGATCCCCGCCACGACCATCA          <  SRR4302534.4936647/94‑1 (MQ=60)

                                                                                     GCTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCA          <  SRR4302534.540105/94‑1 (MQ=60)

                                                                                      CTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCGGGCATACAACACCAGTCCCATAACGACCACCGCCACGACCATCAA         <  SRR4302534.2277703/94‑1 (MQ=60)

                                                                                      CTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAA         >  SRR4302534.462579/1‑94 (MQ=60)

                                                                                      CTCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAA         >  SRR4302534.5913047/1‑94 (MQ=60)

                                                                                      CTCCGGCCCCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAA         >  SRR4302534.6057075/1‑94 (MQ=60)

                                                                                       TCCGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAAT        >  SRR4302534.521930/1‑94 (MQ=60)

                                                                                         CGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATAT      <  SRR4302534.2485051/94‑1 (MQ=60)

                                                                                         CGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATAT      >  SRR4302534.2165505/1‑94 (MQ=60)

                                                                                         CGGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATAT      <  SRR4302534.4179752/94‑1 (MQ=60)

                                                                                          GGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATT     <  SRR4302534.6386193/94‑1 (MQ=60)

                                                                                          GGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATT     <  SRR4302534.5634516/94‑1 (MQ=60)

                                                                                          GGCCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATT     >  SRR4302534.3731298/1‑94 (MQ=60)

                                                                                            CCGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAA   >  SRR4302534.2785231/1‑94 (MQ=60)

                                                                                            CCGCAGTCCTGGGTCCGCAATGCGTCCTGCTTTGCGGCTATTCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAA   >  SRR4302534.832172/1‑94 (MQ=60)

                                                                                             CGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAG  <  SRR4302534.5587199/94‑1 (MQ=60)

                                                                                             CGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAG  <  SRR4302534.5678251/94‑1 (MQ=60)

CCCGCCTGGTGCCAGTTGTGTTTGATAGCCAACGCCATCAACGCGCCGTAGCCCAGCATGGTACGAAACCACGCCAGTGATGTGCGCTCCGGCTGCAGTCCTGGGTCGGCAATGCGTCTGGCTTTGCGGCTATCCGGCATACAACACCAGTCCCATAACGATCACCGCCACGACCATCAATATTAAG  >  NC_000913/3853458‑3853644

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`