Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,857,430 |
A→G |
I105T (ATC→ACC) |
yidK ← |
putative cotransporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,857,430 | 0 | A | G | 100.0%
| 1008.0
/ NA
| 289 | I105T (ATC→ACC) | yidK | putative cotransporter |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (145/144); total (145/144) |
Only 100 of 304 total aligned reads displayed.
GGCAGAAAGCAGACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGCCCATC > NC_000913/3857340‑3857519
|
ggCAGAAAGCAGACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGtg < 1:4182103/93‑1 (MQ=255)
ggCAGAAAGCAGACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGtg > 1:1722077/1‑93 (MQ=255)
gCAGAAAGCAGACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGtgg < 2:5051592/93‑1 (MQ=255)
cAGAAAGCAGACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGggtggt < 1:6144631/93‑1 (MQ=255)
aGAAAGCAGACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGgtggtg > 2:4769324/1‑93 (MQ=255)
gAAAGCAGACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGtggtgg > 2:330888/1‑93 (MQ=255)
gAAAGCAGACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGtggtgg > 1:4825145/1‑93 (MQ=255)
aGCAGACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCaa > 2:5506995/1‑93 (MQ=255)
aGCAGACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCaa < 1:1034293/93‑1 (MQ=255)
aGACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGc < 2:2560601/93‑1 (MQ=255)
aGACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGc > 2:5995942/1‑93 (MQ=255)
aGACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACCCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGc > 1:3657523/1‑93 (MQ=255)
ccGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCcg < 1:1916576/92‑1 (MQ=255)
aCGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCcg > 2:4875190/1‑93 (MQ=255)
cGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCcgc < 2:3563980/93‑1 (MQ=255)
ccGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAAGCGGGGGTGGTGGCAATGCCgcgc < 1:5550826/93‑1 (MQ=255)
cGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCt < 2:4650032/93‑1 (MQ=255)
cGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCt < 1:4559358/93‑1 (MQ=255)
gTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTc < 1:731794/93‑1 (MQ=255)
gTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTc < 2:1490507/93‑1 (MQ=255)
tGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCa > 1:13456/1‑93 (MQ=255)
tGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCCGGGGTGGTGGCAATGCCGCGCTTcc > 1:2775377/1‑92 (MQ=255)
gCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGa > 1:1508840/1‑93 (MQ=255)
cAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGAt < 1:4282374/93‑1 (MQ=255)
aaTTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATa > 1:5441096/1‑93 (MQ=255)
aaTTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATa > 1:1137901/1‑93 (MQ=255)
ttAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAgc > 1:3422340/1‑93 (MQ=255)
aGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAgcgc > 2:4717281/1‑93 (MQ=255)
aGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAgcgc > 2:4011025/1‑93 (MQ=255)
ggAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGcgcg > 2:106947/1‑93 (MQ=255)
ggAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGcgcg > 1:6288157/1‑93 (MQ=255)
aaGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGt < 1:4090127/93‑1 (MQ=255)
aaGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGt < 2:4550073/93‑1 (MQ=255)
aGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTa > 2:277983/1‑93 (MQ=255)
aGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTa < 1:5977300/93‑1 (MQ=255)
gCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTaa > 1:349272/1‑93 (MQ=255)
cAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTaaa > 1:4645972/1‑93 (MQ=255)
aGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTaaaa < 1:3243538/93‑1 (MQ=255)
gAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTaaaaa > 2:2845944/1‑93 (MQ=255)
aGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGa > 1:2096153/1‑93 (MQ=255)
gTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGAt > 1:5681287/1‑93 (MQ=255)
tCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGAtt < 2:4284250/93‑1 (MQ=255)
tCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGAtt < 2:2730093/93‑1 (MQ=255)
cGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTa < 1:4501392/93‑1 (MQ=255)
gatgatAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAg > 1:2209274/1‑93 (MQ=255)
gatgatAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAg > 1:6396220/1‑93 (MQ=255)
atgatAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAgc < 2:3787017/93‑1 (MQ=255)
atgatAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAgc < 2:5109088/93‑1 (MQ=255)
atgatAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAgc < 2:2225753/93‑1 (MQ=255)
tgatAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAgcg > 2:158891/1‑93 (MQ=255)
gatAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAgcgc < 2:734797/93‑1 (MQ=255)
ataataCGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGcgcg < 2:2432635/93‑1 (MQ=255)
aataCGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAg < 2:5861986/93‑1 (MQ=255)
aataCGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAg < 2:3750162/93‑1 (MQ=255)
aataCGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAg > 2:33824/1‑93 (MQ=255)
taCGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGa > 2:5599385/1‑93 (MQ=255)
taCGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGa > 2:4797658/1‑93 (MQ=255)
aCGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGaa < 1:931084/93‑1 (MQ=255)
aCGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGaa < 2:1785030/93‑1 (MQ=255)
gtcgtTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATc > 2:4988038/1‑93 (MQ=255)
tcgtTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCa > 1:186627/1‑93 (MQ=255)
cgtTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAg < 2:1163975/93‑1 (MQ=255)
ttttATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCg < 1:562138/93‑1 (MQ=255)
aTCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAACGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCAc < 1:5221808/93‑1 (MQ=255)
tCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCAcc < 1:4397535/93‑1 (MQ=255)
aTAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGc > 1:3772562/1‑93 (MQ=255)
aTAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGc < 2:4603449/93‑1 (MQ=255)
tAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCt > 1:3036247/1‑93 (MQ=255)
aaCGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTg < 2:6104331/93‑1 (MQ=255)
aCGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGa > 2:626075/1‑93 (MQ=255)
aCGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGa > 1:315730/1‑93 (MQ=255)
aCGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGa > 2:3173857/1‑93 (MQ=255)
cGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGaa > 1:1645629/1‑93 (MQ=255)
ttCCTCCAGAAAATCGGGGGTCGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGt < 2:5311410/93‑1 (MQ=255)
tcctccAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTc < 1:2265155/93‑1 (MQ=255)
tcctccAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTc < 2:719623/93‑1 (MQ=255)
tcctccAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTc < 2:3070089/93‑1 (MQ=255)
cctccAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCa > 1:4047508/1‑93 (MQ=255)
ccAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACtt > 1:2892569/1‑93 (MQ=255)
cAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTc > 1:4934446/1‑93 (MQ=255)
aGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTcc > 2:5680300/1‑93 (MQ=255)
aGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTcc < 2:112432/93‑1 (MQ=255)
gAAAATCGGGGGTGGTGGCACTGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTccc < 1:1166715/93‑1 (MQ=255)
gAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTccc < 2:5840604/93‑1 (MQ=255)
gAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTccc < 2:661068/93‑1 (MQ=255)
gAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTccc > 2:894405/1‑93 (MQ=255)
gAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTccc < 1:4011025/93‑1 (MQ=255)
gAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTccc < 1:5028090/93‑1 (MQ=255)
aaaaTCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCa > 2:5328135/1‑93 (MQ=255)
aaaaTCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCa > 2:1970008/1‑93 (MQ=255)
aaTCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGc < 1:5858102/93‑1 (MQ=255)
aaTCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGc > 2:1863426/1‑93 (MQ=255)
aaTCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGc > 2:2296093/1‑93 (MQ=255)
aTCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGcc > 2:4456219/1‑93 (MQ=255)
aTCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGcc > 2:4163306/1‑93 (MQ=255)
aTCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGcc > 1:6070519/1‑93 (MQ=255)
aTCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGcc > 2:1367298/1‑93 (MQ=255)
cGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGCCCa < 1:2579803/93‑1 (MQ=255)
cGGGGGGGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGCCCa > 1:667143/1‑93 (MQ=255)
ggggTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGCCCATc > 2:394694/1‑93 (MQ=255)
|
GGCAGAAAGCAGACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGCCCATC > NC_000913/3857340‑3857519
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGCCCATCACCG > NC_000913/3857338‑3857523
|
TCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGT < SRR4302534.5725662/94‑1 (MQ=60)
CGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTG > SRR4302534.1766821/1‑94 (MQ=60)
GGCAGAAAGCAGACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGG > SRR4302534.5765333/1‑94 (MQ=60)
GGCAGAAAGCAGACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGG < SRR4302534.4295124/94‑1 (MQ=60)
CAGAAAGCAGACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTG > SRR4302534.4564685/1‑94 (MQ=60)
CAGAAAGCAGACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTG < SRR4302534.6311734/94‑1 (MQ=60)
CAGAAAGCAGACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTG < SRR4302534.3206634/94‑1 (MQ=60)
AGAAAGCAGACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGG > SRR4302534.1714012/1‑94 (MQ=60)
AGAAAGCAGACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGG > SRR4302534.4956089/1‑94 (MQ=60)
AGAAAGCAGACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGG > SRR4302534.6373759/1‑94 (MQ=60)
GAAAGCAGACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGC > SRR4302534.1669036/1‑94 (MQ=60)
AAAGCAGACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCA < SRR4302534.1868081/94‑1 (MQ=60)
AAGCAGACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAA > SRR4302534.4788970/1‑94 (MQ=60)
AGCAGACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAAT < SRR4302534.1060985/94‑1 (MQ=60)
CAGACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGC < SRR4302534.4125053/94‑1 (MQ=60)
CAGACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGC < SRR4302534.4353439/94‑1 (MQ=60)
CAGACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACCCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGC > SRR4302534.3755828/1‑94 (MQ=60)
AGACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCC > SRR4302534.4856680/1‑94 (MQ=60)
AGACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCC < SRR4302534.4472227/94‑1 (MQ=60)
CCGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGC < SRR4302534.1966630/94‑1 (MQ=60)
ACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGG > SRR4302534.5658146/1‑94 (MQ=60)
ACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGC < SRR4302534.470196/94‑1 (MQ=60)
GCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGC > SRR4302534.4398085/1‑94 (MQ=60)
CCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGGGGCAATGCCGCGCT > SRR4302534.512991/1‑94 (MQ=60)
CCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAAGCGGGGGTGGTGGCAATGCCGCGCT < SRR4302534.5700676/94‑1 (MQ=60)
CGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTT < SRR4302534.4682976/94‑1 (MQ=60)
CGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGAGGTGGCAATGCCGCGCTT > SRR4302534.5230249/1‑94 (MQ=60)
GGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTC > SRR4302534.5671284/1‑94 (MQ=60)
GTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCA < SRR4302534.1010736/94‑1 (MQ=60)
GTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCA > SRR4302534.2297673/1‑94 (MQ=60)
GTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCA > SRR4302534.13812/1‑94 (MQ=60)
GTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCA > SRR4302534.1451266/1‑94 (MQ=60)
GTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCA < SRR4302534.4194684/94‑1 (MQ=60)
GTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCA < SRR4302534.749880/94‑1 (MQ=60)
GTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCA > SRR4302534.3571354/1‑94 (MQ=60)
GTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCCGGGGTGGTGGCAATGCCGCGCTTCC > SRR4302534.2848398/1‑94 (MQ=60)
TGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAG > SRR4302534.5032663/1‑94 (MQ=60)
TGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAG < SRR4302534.3617888/94‑1 (MQ=60)
TGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAG > SRR4302534.6476486/1‑94 (MQ=60)
TGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAG < SRR4302534.1189388/94‑1 (MQ=60)
GGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGA < SRR4302534.274803/94‑1 (MQ=60)
GGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGA > SRR4302534.1548517/1‑94 (MQ=60)
GCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGAT < SRR4302534.6284860/94‑1 (MQ=60)
GCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGAT < SRR4302534.4239354/94‑1 (MQ=60)
CAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATA < SRR4302534.4398328/94‑1 (MQ=60)
CAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATA > SRR4302534.5587659/1‑94 (MQ=60)
CAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATA > SRR4302534.1167662/1‑94 (MQ=60)
AATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAG > SRR4302534.2760484/1‑94 (MQ=60)
AATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAG > SRR4302534.3275036/1‑94 (MQ=60)
ATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGC > SRR4302534.3514297/1‑94 (MQ=60)
ATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGC < SRR4302534.4214582/94‑1 (MQ=60)
TTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCG < SRR4302534.1730244/94‑1 (MQ=60)
GGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCG > SRR4302534.3804826/1‑94 (MQ=60)
AGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCG > SRR4302534.4129670/1‑94 (MQ=60)
AGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCG > SRR4302534.6458287/1‑94 (MQ=60)
AGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGAGGTGGCAATGCCGCGCTTCAGATAGCGCG > SRR4302534.100629/1‑94 (MQ=60)
GGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGG < SRR4302534.3109530/94‑1 (MQ=60)
GGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGG > SRR4302534.570772/1‑94 (MQ=60)
GAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGT > SRR4302534.1156838/1‑94 (MQ=60)
AAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTA < SRR4302534.4620242/94‑1 (MQ=60)
AAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTA < SRR4302534.4200004/94‑1 (MQ=60)
AGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCGAGAAACTCGGGGGTGGTCGCAATGCCGCGCTTCAGATAGCGCGGTAA < SRR4302534.3902817/94‑1 (MQ=60)
AGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAA > SRR4302534.358223/1‑94 (MQ=60)
AGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAA > SRR4302534.6071744/1‑94 (MQ=60)
AGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAA < SRR4302534.6139643/94‑1 (MQ=60)
GCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAA > SRR4302534.4772088/1‑94 (MQ=60)
GCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAA < SRR4302534.302084/94‑1 (MQ=60)
CAGACGTCGATGATAATACGCGTCGTTTTATCATAACGTACCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAA < SRR4302534.5899458/94‑1 (MQ=60)
AGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAA < SRR4302534.3329867/94‑1 (MQ=60)
AGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAA < SRR4302534.3464948/94‑1 (MQ=60)
AGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAA > SRR4302534.6318225/1‑94 (MQ=60)
AAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGA > SRR4302534.2151146/1‑94 (MQ=60)
AAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGA < SRR4302534.2386394/94‑1 (MQ=60)
AGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGAT > SRR4302534.5835117/1‑94 (MQ=60)
AGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGAT < SRR4302534.5435100/94‑1 (MQ=60)
TCTATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTA < SRR4302534.2469140/94‑1 (MQ=60)
TCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTA > SRR4302534.2059079/1‑94 (MQ=60)
TCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTA > SRR4302534.4480935/1‑94 (MQ=60)
CGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAG < SRR4302534.4623234/94‑1 (MQ=60)
CGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAG > SRR4302534.2267767/1‑94 (MQ=60)
CGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAG > SRR4302534.6568956/1‑94 (MQ=60)
ATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCG < SRR4302534.2865878/94‑1 (MQ=60)
TGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGC > SRR4302534.1963951/1‑94 (MQ=60)
TGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGC > SRR4302534.6500092/1‑94 (MQ=60)
GATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCG < SRR4302534.5786778/94‑1 (MQ=60)
GATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCG < SRR4302534.6579756/94‑1 (MQ=60)
GATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCG < SRR4302534.3318847/94‑1 (MQ=60)
AATACGCGTCGTTTTATCATAACGTCCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGG < SRR4302534.656131/94‑1 (MQ=60)
ACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAG < SRR4302534.954768/94‑1 (MQ=60)
CGCGTCGTTTTTTCATAAAGTTTCTCCCGAAAATCGGGGGGGGGGGCAATGGCGCGCTTCAGATAGCGCGGGAAAAAGATTAGCGCGAGGAAGA > SRR4302534.5973869/1‑94 (MQ=53)
CGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCAGTAAAAAGAcagcaatatgcatca < SRR4302534.5385558/94‑16 (MQ=60)
GCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGAT > SRR4302534.216999/1‑94 (MQ=60)
CGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATC < SRR4302534.119032/94‑1 (MQ=60)
CGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATC < SRR4302534.2173682/94‑1 (MQ=60)
CGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATC > SRR4302534.4180092/1‑94 (MQ=60)
GTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCA > SRR4302534.3784585/1‑94 (MQ=60)
GTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCA > SRR4302534.5039772/1‑94 (MQ=60)
GTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCA > SRR4302534.191528/1‑94 (MQ=60)
CGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGC > SRR4302534.4019589/1‑94 (MQ=60)
CGTTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGC < SRR4302534.1964627/94‑1 (MQ=60)
CGTTTTATCATAACGTTCCTACAGACAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGC < SRR4302534.5133542/94‑1 (MQ=60)
TTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGT < SRR4302534.575969/94‑1 (MQ=60)
TTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGT < SRR4302534.5892356/94‑1 (MQ=60)
TTTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGAGCGAGGGAGATCAGCGT > SRR4302534.600552/1‑94 (MQ=60)
TTTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTC < SRR4302534.5324762/94‑1 (MQ=60)
TTATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCA > SRR4302534.4669390/1‑94 (MQ=60)
TATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCAC > SRR4302534.1222777/1‑94 (MQ=60)
ATCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAACGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACC < SRR4302534.5362759/94‑1 (MQ=60)
TCATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCG < SRR4302534.4516181/94‑1 (MQ=60)
CATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGC > SRR4302534.3873859/1‑94 (MQ=60)
CATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGC < SRR4302534.1492749/94‑1 (MQ=60)
ATAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCT > SRR4302534.3115873/1‑94 (MQ=60)
TAACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTG > SRR4302534.6189604/1‑94 (MQ=60)
AACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGA < SRR4302534.1093362/94‑1 (MQ=60)
AACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGA > SRR4302534.323864/1‑94 (MQ=60)
ACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAA > SRR4302534.1688522/1‑94 (MQ=60)
ACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAA > SRR4302534.4223711/1‑94 (MQ=60)
ACGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAA < SRR4302534.356771/94‑1 (MQ=60)
CGTTCCTCCAGAAAATCGGGGGTGGTGGCCATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAG > SRR4302534.5787876/1‑94 (MQ=60)
CGTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAG > SRR4302534.698769/1‑94 (MQ=60)
GTTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGT < SRR4302534.336979/94‑1 (MQ=60)
TTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTC > SRR4302534.2092457/1‑94 (MQ=60)
TTCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTC < SRR4302534.769770/94‑1 (MQ=60)
TCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCA > SRR4302534.3682832/1‑94 (MQ=60)
TCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCA > SRR4302534.4156056/1‑94 (MQ=60)
TCCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCA < SRR4302534.2325232/94‑1 (MQ=60)
CCTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCAC > SRR4302534.720297/1‑94 (MQ=60)
CTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACT > SRR4302534.1565731/1‑94 (MQ=60)
CTCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACT > SRR4302534.5534779/1‑94 (MQ=60)
TCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTT > SRR4302534.2301863/1‑94 (MQ=60)
TCCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTT > SRR4302534.2968480/1‑94 (MQ=60)
CCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTC > SRR4302534.1864407/1‑94 (MQ=60)
CCAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTC > SRR4302534.5068169/1‑94 (MQ=60)
CAGAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCC > SRR4302534.6268132/1‑94 (MQ=60)
GAAAATCGGGGGTGGTGGCACTGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCA < SRR4302534.1197358/94‑1 (MQ=60)
GAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCA < SRR4302534.4118435/94‑1 (MQ=60)
GAAAATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCA < SRR4302534.5163893/94‑1 (MQ=60)
AATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGCC < SRR4302534.598211/94‑1 (MQ=60)
AATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGCC < SRR4302534.6017160/94‑1 (MQ=60)
AATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGCC > SRR4302534.6235562/1‑94 (MQ=60)
ATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGCCC < SRR4302534.2943212/94‑1 (MQ=60)
ATCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGCCC < SRR4302534.464445/94‑1 (MQ=60)
TCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCTGGCCA > SRR4302534.4521208/1‑94 (MQ=60)
TCGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGCCCA < SRR4302534.763716/94‑1 (MQ=60)
TCGGGGGGGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGCCCA > SRR4302534.683386/1‑94 (MQ=60)
CGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGCCCCT > SRR4302534.4721114/1‑94 (MQ=60)
CGGGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGCCCAT < SRR4302534.2648124/94‑1 (MQ=60)
GGGGGTGGTGGCAAAGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCAACGCTGAAGTCACTTCCCAGCCCATC > SRR4302534.313004/1‑94 (MQ=60)
GGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGCCCATCA < SRR4302534.4062258/94‑1 (MQ=60)
GGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGCCCATCA < SRR4302534.1369934/94‑1 (MQ=60)
GGGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGCCCATCA < SRR4302534.6193161/94‑1 (MQ=60)
GGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGCCCATCAC < SRR4302534.36396/94‑1 (MQ=60)
GGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGCCCATCAC < SRR4302534.3002223/94‑1 (MQ=60)
GGGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGCCCATCAC > SRR4302534.4816727/1‑94 (MQ=60)
GGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGCCCATCACC > SRR4302534.2150774/1‑94 (MQ=60)
GGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGCCCATCACC > SRR4302534.3223435/1‑94 (MQ=60)
GGTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGCCCATCACC < SRR4302534.1693914/94‑1 (MQ=60)
GTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGCCCATCACCG > SRR4302534.4441595/1‑94 (MQ=60)
GTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGCCCATCACCG < SRR4302534.2592757/94‑1 (MQ=60)
GTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGCCCATCACCG > SRR4302534.868395/1‑94 (MQ=60)
GTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGACCATCACCG < SRR4302534.6470757/94‑1 (MQ=60)
GTGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGACCATCACCG < SRR4302534.6470758/94‑1 (MQ=60)
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TCGGCAGAAAGCAGACGCCGGTGGCAATTAGGAAGCAGAAGTCGATGATAATACGCGTCGTTTTATCATAACGTTCCTCCAGAAAATCGGGGATGGTGGCAATGCCGCGCTTCAGATAGCGCGGTAAAAAGATTAGCGCGAGGAAGATCAGCGTCACCGCTGAAGTCACTTCCCAGCCCATCACCG > NC_000913/3857338‑3857523
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
