Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 884 257.2 12958910 96.9% 12557183 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,866,583 A→G S119S (AGT→AGC)  yidR ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,866,5830AG99.3% 951.0 / ‑3.1 277S119S (AGT→AGC) yidRhypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (2/0);  new base G (135/140);  total (137/140)
Fisher's exact test for biased strand distribution p-value = 2.44e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.90e-01

Only 100 of 284 total aligned reads displayed.

TTCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAA  >  NC_000913/3866493‑3866672
                                                                                          |                                                                                         
ttCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCt                                                                                         >  2:6191111/1‑93 (MQ=255)
 tCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTc                                                                                        >  2:2011403/1‑93 (MQ=255)
 tCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTc                                                                                        <  1:2349216/93‑1 (MQ=255)
 tCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTc                                                                                        >  1:2674009/1‑93 (MQ=255)
    ccGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATc                                                                                     >  2:5174950/1‑93 (MQ=255)
     cGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCt                                                                                    >  2:2969153/1‑93 (MQ=255)
     cGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCt                                                                                    <  1:1638449/93‑1 (MQ=255)
     cGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCt                                                                                    <  2:3696872/93‑1 (MQ=255)
      gTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCtt                                                                                   >  1:2920220/1‑93 (MQ=255)
       ttCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTg                                                                                  >  1:3933822/1‑93 (MQ=255)
       ttCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTg                                                                                  <  1:3900266/93‑1 (MQ=255)
          gggCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTgccg                                                                               >  1:596957/1‑93 (MQ=255)
           ggCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTgccgc                                                                              >  1:3306504/1‑93 (MQ=255)
           ggCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTgccgc                                                                              >  2:6237656/1‑93 (MQ=255)
            gCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTgccgcc                                                                             <  2:4181534/93‑1 (MQ=255)
             cTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCt                                                                            <  1:1201450/93‑1 (MQ=255)
             cTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCt                                                                            <  1:4569108/93‑1 (MQ=255)
               aaaGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTc                                                                          <  1:3625556/93‑1 (MQ=255)
                aaGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTca                                                                         >  2:3641338/1‑93 (MQ=255)
                aaGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTca                                                                         <  2:163571/93‑1 (MQ=255)
                aaGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTca                                                                         <  2:1345776/93‑1 (MQ=255)
                 aGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTcaa                                                                        >  2:509518/1‑93 (MQ=255)
                  gACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTcaac                                                                       <  2:2274072/93‑1 (MQ=255)
                    cATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTcaacaa                                                                     <  1:5767802/93‑1 (MQ=255)
                    cATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTcaacaa                                                                     <  2:5550779/93‑1 (MQ=255)
                      tGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATc                                                                   >  1:5379299/1‑93 (MQ=255)
                       gCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCa                                                                  >  1:2619294/1‑93 (MQ=255)
                        cacaTGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCAc                                                                 <  2:1826001/93‑1 (MQ=255)
                         acaTGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACt                                                                <  1:3054765/93‑1 (MQ=255)
                           aTGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTcc                                                              >  1:651195/1‑93 (MQ=255)
                             ggCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCcgc                                                            <  2:5005922/93‑1 (MQ=255)
                             ggCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCcgc                                                            >  2:6296920/1‑93 (MQ=255)
                                tGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGcc                                                         <  1:6449181/93‑1 (MQ=255)
                                 gccgccGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCg                                                        >  1:6392124/1‑93 (MQ=255)
                                 gccgccGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCg                                                        >  1:3316402/1‑93 (MQ=255)
                                  ccgccgCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCga                                                       >  2:5755327/1‑93 (MQ=255)
                                  ccgccgCGCAGCACTCCTGGCATATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCga                                                       >  1:1473079/1‑93 (MQ=255)
                                   cgccgcGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCgat                                                      <  2:3136903/93‑1 (MQ=255)
                                   cgccgcGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCgat                                                      <  2:1001464/93‑1 (MQ=255)
                                    gccgcGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCgatg                                                     >  1:1117445/1‑93 (MQ=255)
                                     ccgcGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCgatga                                                    <  2:2540632/93‑1 (MQ=255)
                                     ccgcGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCgatga                                                    >  1:1862043/1‑93 (MQ=255)
                                        cgcAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATgg                                                 <  2:3982412/93‑1 (MQ=255)
                                        cgcAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATgg                                                 <  2:1170888/93‑1 (MQ=255)
                                        cgcAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATgg                                                 >  1:2997468/1‑93 (MQ=255)
                                         gcagcaCTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGa                                                <  2:5465781/93‑1 (MQ=255)
                                         gcagcaCTCCTGGCGTATACGGCGCGCTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGa                                                <  1:6035220/93‑1 (MQ=255)
                                          cagcaCTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGaa                                               >  1:2848760/1‑93 (MQ=255)
                                          cagcaCTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGaa                                               <  1:5867357/93‑1 (MQ=255)
                                           agcaCTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAg                                              >  2:4211250/1‑93 (MQ=255)
                                              aCTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCg                                           >  1:3712122/1‑93 (MQ=255)
                                                  cTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAAt                                       <  1:1350540/93‑1 (MQ=255)
                                                  cTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGCCGTAAt                                       >  2:1786386/1‑93 (MQ=255)
                                                  cTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTGGCTCATCTTGCCGCCTTCAACAATCGCTCCGCGCCGATGATGGAAGTCGTAAt                                       <  1:2566297/93‑1 (MQ=255)
                                                   tGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATg                                      >  1:6272160/1‑93 (MQ=255)
                                                   tGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATg                                      >  2:3423872/1‑93 (MQ=255)
                                                    ggCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGc                                     <  2:4612520/93‑1 (MQ=255)
                                                     gCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGcc                                    <  2:4413162/93‑1 (MQ=255)
                                                      cGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCa                                   <  2:5923735/93‑1 (MQ=255)
                                                      cGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCa                                   >  2:3294201/1‑93 (MQ=255)
                                                       gTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCAt                                  >  1:4241621/1‑93 (MQ=255)
                                                        tataCGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATg                                 >  2:904309/1‑93 (MQ=255)
                                                        tataCGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATg                                 >  2:5586197/1‑93 (MQ=255)
                                                        tataCGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATg                                 <  1:4983850/93‑1 (MQ=255)
                                                        tataCGGCGCGGTAATATCCATCGCATCAAGGTTGCCCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATg                                 <  1:4376365/93‑1 (MQ=255)
                                                         ataCGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGt                                >  2:6453973/1‑93 (MQ=255)
                                                          taCGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGtt                               >  1:836294/1‑93 (MQ=255)
                                                          taCGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACACCGCGCCGATGATGAAAGTCGTAATGCCATGtt                               <  2:4389721/93‑1 (MQ=255)
                                                           aCGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGttt                              >  2:4497338/1‑93 (MQ=255)
                                                              gcgcGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTtcat                           >  1:2413477/1‑93 (MQ=255)
                                                                gcgGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTtcatca                         <  2:1281162/93‑1 (MQ=255)
                                                                 cgGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAg                        >  2:2644745/1‑93 (MQ=255)
                                                                 cgGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAg                        >  2:210362/1‑93 (MQ=255)
                                                                 cgGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAg                        >  2:4701111/1‑93 (MQ=255)
                                                                   gTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGa                      >  1:5601735/1‑93 (MQ=255)
                                                                   gTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGa                      >  2:726397/1‑93 (MQ=255)
                                                                     aaTATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGAtt                    <  2:4854723/93‑1 (MQ=255)
                                                                      atatCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGAttt                   >  1:6161122/1‑93 (MQ=255)
                                                                      atatCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGAttt                   <  2:5984548/93‑1 (MQ=255)
                                                                      atatCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGAttt                   <  2:3247684/93‑1 (MQ=255)
                                                                         tCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTcc                <  2:2456470/93‑1 (MQ=255)
                                                                         tCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTcc                >  1:4312885/1‑93 (MQ=255)
                                                                         tCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTcc                <  2:1395622/93‑1 (MQ=255)
                                                                          ccATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCg               >  1:3828522/1‑93 (MQ=255)
                                                                           cATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCGCTCCCCGCCGATGATGAAAGTCGTAAGGCCATCTTTCATCAGGATTTTCCgc              >  1:5244056/1‑92 (MQ=255)
                                                                           cATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCgg              >  1:1830816/1‑93 (MQ=255)
                                                                            aTCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCggg             >  1:186931/1‑93 (MQ=255)
                                                                              cggaTCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGcc           >  2:5283558/4‑93 (MQ=255)
                                                                              cGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGcc           <  1:709299/93‑1 (MQ=255)
                                                                               cgaTCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCg          <  2:1921196/91‑1 (MQ=255)
                                                                                 aTCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTg        >  1:5127918/1‑93 (MQ=255)
                                                                                    aaGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGAt     <  1:4076568/93‑1 (MQ=255)
                                                                                    aaGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGAt     <  1:6113833/93‑1 (MQ=255)
                                                                                    aaGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGAt     <  1:4512432/93‑1 (MQ=255)
                                                                                     aGGTTGCTCATCTTGCCGCCTTCAACAATCACTCTGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATg    >  1:6361566/1‑93 (MQ=255)
                                                                                     aGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATg    >  1:2153843/1‑93 (MQ=255)
                                                                                     aGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATg    <  2:1668031/93‑1 (MQ=255)
                                                                                     aGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATg    >  2:6062407/1‑93 (MQ=255)
                                                                                     aGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATg    <  2:2782031/93‑1 (MQ=255)
                                                                                       gTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGaa  <  2:3384543/93‑1 (MQ=255)
                                                                                          |                                                                                         
TTCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAA  >  NC_000913/3866493‑3866672

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCTTTCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAAC  >  NC_000913/3866490‑3866675
                                                                                             |                                                                                            
CCTTTCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTG                                                                                              <  SRR4302534.2799548/94‑1 (MQ=60)
CCTTTCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTG                                                                                              <  SRR4302534.2514217/94‑1 (MQ=60)
CCTGTCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTG                                                                                              <  SRR4302534.5266274/94‑1 (MQ=60)
 CTTTCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGC                                                                                             >  SRR4302534.5603643/1‑94 (MQ=60)
 CTTTCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGC                                                                                             >  SRR4302534.3339818/1‑94 (MQ=60)
 CTTTCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGC                                                                                             >  SRR4302534.4087160/1‑94 (MQ=60)
 CTTTCACCGTTCGGGCTAAACACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGC                                                                                             <  SRR4302534.2187550/94‑1 (MQ=60)
  TTTCCCCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCT                                                                                            <  SRR4302534.4645501/94‑1 (MQ=60)
   TTCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTC                                                                                           >  SRR4302534.2744711/1‑94 (MQ=60)
    TCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCA                                                                                          <  SRR4302534.2760861/94‑1 (MQ=60)
    TCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCA                                                                                          <  SRR4302534.2411561/94‑1 (MQ=60)
     CACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCAT                                                                                         <  SRR4302534.1676693/94‑1 (MQ=60)
      ACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATC                                                                                        >  SRR4302534.6215651/1‑94 (MQ=60)
      ACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATC                                                                                        >  SRR4302534.5930239/1‑94 (MQ=60)
       CCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCT                                                                                       >  SRR4302534.1281682/1‑94 (MQ=60)
        CGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTT                                                                                      >  SRR4302534.2996851/1‑94 (MQ=60)
        CGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTT                                                                                      <  SRR4302534.6181444/94‑1 (MQ=60)
        CGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTT                                                                                      <  SRR4302534.1681182/94‑1 (MQ=60)
         GTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTG                                                                                     <  SRR4302534.3957690/94‑1 (MQ=60)
         GTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTG                                                                                     >  SRR4302534.4039186/1‑94 (MQ=60)
          TTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGC                                                                                    >  SRR4302534.4293268/1‑94 (MQ=60)
          TTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGC                                                                                    <  SRR4302534.4004901/94‑1 (MQ=60)
           TCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCC                                                                                   <  SRR4302534.4637878/94‑1 (MQ=60)
            CGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCG                                                                                  >  SRR4302534.611514/1‑94 (MQ=60)
            CGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCG                                                                                  <  SRR4302534.3398268/94‑1 (MQ=60)
            CGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCG                                                                                  >  SRR4302534.6156511/1‑94 (MQ=60)
            CGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCG                                                                                  >  SRR4302534.6608137/1‑94 (MQ=60)
             GGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGC                                                                                 >  SRR4302534.3394790/1‑94 (MQ=60)
             GGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGC                                                                                 <  SRR4302534.263490/94‑1 (MQ=60)
              GGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCC                                                                                <  SRR4302534.391036/94‑1 (MQ=60)
                CTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTT                                                                              <  SRR4302534.3860497/94‑1 (MQ=60)
                CTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTT                                                                              <  SRR4302534.2592411/94‑1 (MQ=60)
                CTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTT                                                                              <  SRR4302534.4692976/94‑1 (MQ=60)
                CTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTT                                                                              <  SRR4302534.1233069/94‑1 (MQ=60)
                CTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGATCATCTTGCCGCCTT                                                                              >  SRR4302534.5857756/1‑94 (MQ=60)
                 TAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTC                                                                             <  SRR4302534.1401845/94‑1 (MQ=60)
                 TAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTC                                                                             <  SRR4302534.285502/94‑1 (MQ=60)
                  AAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCA                                                                            <  SRR4302534.3723022/94‑1 (MQ=60)
                   AAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAA                                                                           <  SRR4302534.4433472/94‑1 (MQ=60)
                    AGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAAC                                                                          >  SRR4302534.2597951/1‑94 (MQ=60)
                     GACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACA                                                                         <  SRR4302534.6288614/94‑1 (MQ=60)
                       CATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAAT                                                                       >  SRR4302534.4013668/1‑94 (MQ=60)
                       CATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAAT                                                                       <  SRR4302534.5924276/94‑1 (MQ=60)
                        ATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATC                                                                      >  SRR4302534.5524234/1‑94 (MQ=60)
                        ATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTGGCTCATCTTGCCGCCTTCAACAATC                                                                      <  SRR4302534.5403729/94‑1 (MQ=60)
                         TGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCA                                                                     >  SRR4302534.2688604/1‑94 (MQ=60)
                           CACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACT                                                                   >  SRR4302534.4878607/1‑94 (MQ=60)
                            ACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTC                                                                  >  SRR4302534.686072/1‑94 (MQ=60)
                            ACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTC                                                                  <  SRR4302534.3134910/94‑1 (MQ=60)
                             CATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCC                                                                 >  SRR4302534.667010/1‑94 (MQ=60)
                               TGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGC                                                               >  SRR4302534.3675995/1‑94 (MQ=60)
                               TGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGC                                                               >  SRR4302534.6646257/1‑94 (MQ=60)
                                GGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCG                                                              >  SRR4302534.688787/1‑94 (MQ=60)
                                   TGCCGCCGCGCAGCACTCCTGGCGTATTCGGCGCGGAAATATCCATCGCATCAAGGTTGCTTATCTTGCCGCCTTCAACTATCGCTCCGCGCCG                                                           <  SRR4302534.4420428/94‑1 (MQ=60)
                                   TGCCGCCGCGCAGCACTCCTGGCGTATACTGCGCGGTAATATCCATCGCATCAAGGATGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCG                                                           >  SRR4302534.2713544/1‑94 (MQ=60)
                                   TGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCG                                                           <  SRR4302534.6622982/94‑1 (MQ=60)
                                   TGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCG                                                           >  SRR4302534.3405042/1‑94 (MQ=60)
                                   TGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCG                                                           <  SRR4302534.4420616/94‑1 (MQ=60)
                                   TGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCG                                                           >  SRR4302534.6564769/1‑94 (MQ=60)
                                   TGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCG                                                           >  SRR4302534.2038165/1‑94 (MQ=60)
                                    GCCGCCGCGCAGCACTCCTGGCATATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGA                                                          >  SRR4302534.1511837/1‑94 (MQ=60)
                                     CCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGAT                                                         <  SRR4302534.5442085/94‑1 (MQ=60)
                                      CGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATG                                                        <  SRR4302534.6639991/94‑1 (MQ=60)
                                      CGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATG                                                        >  SRR4302534.1146628/1‑94 (MQ=60)
                                       GCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGA                                                       >  SRR4302534.1910512/1‑94 (MQ=60)
                                        CCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGAT                                                      <  SRR4302534.3737691/94‑1 (MQ=60)
                                         CTCGCATCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCAGCAAGGTCGCAAATCTTGCCGCCTTCACCAATCCCTCCGCGCCGATGATG                                                     <  SRR4302534.1708593/94‑1 (MQ=60)
                                         CGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATG                                                     >  SRR4302534.6231813/1‑94 (MQ=60)
                                          GCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGG                                                    >  SRR4302534.3075852/1‑94 (MQ=60)
                                           CGCAGCACTCCTGGCGTATACGGCTCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCCCTCCGCGCCGATGATGGA                                                   <  SRR4302534.6555336/94‑1 (MQ=60)
                                            GCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAA                                                  >  SRR4302534.2923595/1‑94 (MQ=60)
                                            GCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAA                                                  >  SRR4302534.3113310/1‑94 (MQ=60)
                                            GCAGCACTCCTGGCGTATACGGCGCGCTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAA                                                  <  SRR4302534.6199249/94‑1 (MQ=60)
                                             CAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAG                                                 <  SRR4302534.6026666/94‑1 (MQ=60)
                                              AGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCcgtcctggcatt                                                >  SRR4302534.4269213/1‑82 (MQ=60)
                                              AGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGT                                                <  SRR4302534.3173446/94‑1 (MQ=60)
                                              AGCACTCCTGGCGTATACGGCGCCGTAATATCCATCGCATCAAGGTTGCTCATCTTGCTGCCTTCTACAATCACTCCGCGCCGATGAaacaaga                                                >  SRR4302534.2847868/1‑87 (MQ=60)
                                               GCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTC                                               <  SRR4302534.3790660/94‑1 (MQ=60)
                                               GCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTC                                               <  SRR4302534.3041959/94‑1 (MQ=60)
                                                CACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCG                                              >  SRR4302534.3811934/1‑94 (MQ=60)
                                                CACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCG                                              <  SRR4302534.3666551/94‑1 (MQ=60)
                                                CACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCG                                              >  SRR4302534.5723796/1‑94 (MQ=60)
                                                 ACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGT                                             >  SRR4302534.6448252/1‑94 (MQ=60)
                                                 ACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATAGAAGTCGT                                             >  SRR4302534.5681251/1‑94 (MQ=60)
                                                   TCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAA                                           >  SRR4302534.191290/1‑94 (MQ=60)
                                                    CCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAAT                                          >  SRR4302534.6511273/1‑94 (MQ=60)
                                                    CCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAAT                                          <  SRR4302534.6409915/94‑1 (MQ=60)
                                                     CTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATG                                         >  SRR4302534.6441970/1‑94 (MQ=60)
                                                     CTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATG                                         >  SRR4302534.597922/1‑94 (MQ=60)
                                                     CTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATG                                         <  SRR4302534.1386139/94‑1 (MQ=60)
                                                     CTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTGGCTCATCTTGCCGCCTTCAACAATCGCTCCGCGCCGATGATGGAAGTCGTAATG                                         <  SRR4302534.2634299/94‑1 (MQ=60)
                                                      TGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGC                                        <  SRR4302534.4621466/94‑1 (MQ=60)
                                                       GGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCC                                       <  SRR4302534.2424915/94‑1 (MQ=60)
                                                       GGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCC                                       >  SRR4302534.4707929/1‑94 (MQ=60)
                                                         CGTATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCAT                                     >  SRR4302534.4355996/1‑94 (MQ=60)
                                                           TATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGT                                   <  SRR4302534.728162/94‑1 (MQ=60)
                                                           TATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGT                                   <  SRR4302534.5118729/94‑1 (MQ=60)
                                                           TATACGGCGCGGTAATATCCATCGCATCAAGGTTGCCCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGT                                   <  SRR4302534.4494324/94‑1 (MQ=60)
                                                            ATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTT                                  >  SRR4302534.857351/1‑94 (MQ=60)
                                                            ATACGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTT                                  >  SRR4302534.2059770/1‑94 (MQ=60)
                                                               CGGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCA                               >  SRR4302534.5346962/1‑94 (MQ=60)
                                                                GGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCAT                              <  SRR4302534.6352767/94‑1 (MQ=60)
                                                                GGCGCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCAT                              >  SRR4302534.2477665/1‑94 (MQ=60)
                                                                   GCGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAG                           <  SRR4302534.3094483/94‑1 (MQ=60)
                                                                    CGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGG                          <  SRR4302534.1324935/94‑1 (MQ=60)
                                                                    CGGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGG                          <  SRR4302534.296685/94‑1 (MQ=60)
                                                                     GGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGA                         >  SRR4302534.5503490/1‑94 (MQ=60)
                                                                     GGTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGA                         >  SRR4302534.5753230/1‑94 (MQ=60)
                                                                      GTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGAT                        >  SRR4302534.2679413/1‑94 (MQ=60)
                                                                      GTAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGAT                        <  SRR4302534.4664457/94‑1 (MQ=60)
                                                                       TAATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATT                       <  SRR4302534.1211317/94‑1 (MQ=60)
                                                                        AATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTT                      <  SRR4302534.2967766/94‑1 (MQ=60)
                                                                        AATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTT                      >  SRR4302534.6328706/1‑94 (MQ=60)
                                                                         ATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTT                     <  SRR4302534.4065945/94‑1 (MQ=60)
                                                                         ATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTT                     <  SRR4302534.4435904/94‑1 (MQ=60)
                                                                         ATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTT                     >  SRR4302534.5897428/1‑94 (MQ=60)
                                                                         ATATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTT                     <  SRR4302534.603967/94‑1 (MQ=60)
                                                                           ATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCC                   >  SRR4302534.4429713/1‑94 (MQ=60)
                                                                           ATCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCC                   <  SRR4302534.4014925/94‑1 (MQ=60)
                                                                            TCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCG                  >  SRR4302534.3931357/1‑94 (MQ=60)
                                                                            TCCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCG                  <  SRR4302534.233648/94‑1 (MQ=60)
                                                                             CCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCGCTCCCCGCCGATGATGAAAGTCGTAAGGCCATCTTTCATCAGGATTTTCCGC                 >  SRR4302534.5385694/1‑94 (MQ=60)
                                                                             CCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGG                 >  SRR4302534.813110/1‑94 (MQ=60)
                                                                             CCATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGG                 >  SRR4302534.1878430/1‑94 (MQ=60)
                                                                              CATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGG                <  SRR4302534.1824462/94‑1 (MQ=60)
                                                                              CATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGG                >  SRR4302534.2442870/1‑94 (MQ=60)
                                                                              CATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGG                >  SRR4302534.191841/1‑94 (MQ=60)
                                                                              CATCGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGG                >  SRR4302534.4405899/1‑94 (MQ=60)
                                                                                 CGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCG             <  SRR4302534.726711/94‑1 (MQ=60)
                                                                                 CGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCG             <  SRR4302534.5365416/94‑1 (MQ=60)
                                                                                 CGCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCG             <  SRR4302534.4566223/94‑1 (MQ=60)
                                                                                  GCATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGT            >  SRR4302534.1638413/1‑94 (MQ=60)
                                                                                   CATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTG           >  SRR4302534.6325350/1‑94 (MQ=60)
                                                                                   CATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTG           >  SRR4302534.5266357/1‑94 (MQ=60)
                                                                                    ATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGG          >  SRR4302534.1904494/1‑94 (MQ=60)
                                                                                    ATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGG          >  SRR4302534.3952535/1‑94 (MQ=60)
                                                                                    ATCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGG          <  SRR4302534.6620234/94‑1 (MQ=60)
                                                                                     TCAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGA         <  SRR4302534.954159/94‑1 (MQ=60)
                                                                                      CAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGAT        >  SRR4302534.3063597/1‑94 (MQ=60)
                                                                                      CAAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGAT        <  SRR4302534.40925/94‑1 (MQ=60)
                                                                                       AAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCTGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATG       >  SRR4302534.6533360/1‑94 (MQ=60)
                                                                                       AAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATG       <  SRR4302534.4634651/94‑1 (MQ=60)
                                                                                       AAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATG       >  SRR4302534.5135275/1‑94 (MQ=60)
                                                                                       AAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATG       <  SRR4302534.4185971/94‑1 (MQ=60)
                                                                                       AAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATG       <  SRR4302534.1025610/94‑1 (MQ=60)
                                                                                       AAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATG       >  SRR4302534.3185233/1‑94 (MQ=60)
                                                                                       AAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATG       <  SRR4302534.6280166/94‑1 (MQ=60)
                                                                                       AAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATG       >  SRR4302534.2210697/1‑94 (MQ=60)
                                                                                       AAGGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTAGATG       <  SRR4302534.1903467/94‑1 (MQ=60)
                                                                                        AGGTTGCTCATCTTGCCGCCTGCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGA      <  SRR4302534.2318313/94‑1 (MQ=60)
                                                                                         GGTTGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGGAATGCGATGTTTAATCAGGATTTTCCGGGCCGCGGGTGAA     >  SRR4302534.5136826/1‑94 (MQ=60)
                                                                                            TGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAAC  >  SRR4302534.278197/1‑94 (MQ=60)
                                                                                            TGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAAC  >  SRR4302534.3751174/1‑94 (MQ=60)
                                                                                            TGCTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAAC  <  SRR4302534.4317009/94‑1 (MQ=60)
                                                                                             |                                                                                            
CCTTTCACCGTTCGGGCTAAAGACATGCACATGGCTGCCGCCGCGCAGCACTCCTGGCGTATACGGCGCGGTAATATCCATCGCATCAAGGTTACTCATCTTGCCGCCTTCAACAATCACTCCGCGCCGATGATGGAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAAC  >  NC_000913/3866490‑3866675

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑