Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,903,393	G→A	A268V (GCC→GTC)	bglG ←	BglG

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,903,393	0	G	A	99.1%	815.3 / ‑5.1	212	A268V (GCC→GTC)	bglG	BglG
Reads supporting (aligned to +/- strand): ref base G (1/1); new base A (104/106); total (105/107)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.34e-01

Only 100 of 214 total aligned reads displayed.

TTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCCATGCTTGC  >  NC_000913/3903303‑3903482

 ttttCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTa                                                                                        >  2:6466252/1‑93 (MQ=255)

 ttttCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTa                                                                                        >  2:6068701/1‑93 (MQ=255)

 ttttCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTa                                                                                        <  2:4584021/93‑1 (MQ=255)

 ttttCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTa                                                                                        <  2:4271310/93‑1 (MQ=255)

         ttttGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATa                                                                                <  2:4054431/93‑1 (MQ=255)

         ttttGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATa                                                                                <  1:3178940/93‑1 (MQ=255)

          tttGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATaa                                                                               <  1:1255491/93‑1 (MQ=255)

           ttGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAAt                                                                              >  2:875313/1‑93 (MQ=255)

           ttGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAAt                                                                              <  2:3486070/93‑1 (MQ=255)

            tGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAAtc                                                                             <  1:6438599/93‑1 (MQ=255)

              cccGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAAtctc                                                                           <  2:5137720/93‑1 (MQ=255)

              cccGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAAtctc                                                                           <  2:5604209/93‑1 (MQ=255)

               ccGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATctct                                                                          >  1:1803508/1‑93 (MQ=255)

                cGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTg                                                                         >  2:5958835/1‑93 (MQ=255)

                  cTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCg                                                                       >  2:6231602/1‑93 (MQ=255)

                  cTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCg                                                                       <  2:5447209/93‑1 (MQ=255)

                  cTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCg                                                                       <  1:2467553/93‑1 (MQ=255)

                   ttAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCgg                                                                      >  1:3039281/1‑93 (MQ=255)

                    tAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCggg                                                                     <  2:3135911/93‑1 (MQ=255)

                    tAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCggg                                                                     >  1:5153925/1‑93 (MQ=255)

                     aGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGt                                                                    >  2:1787078/1‑93 (MQ=255)

                     aGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGt                                                                    <  1:5851694/93‑1 (MQ=255)

                     aGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGt                                                                    <  1:4164340/93‑1 (MQ=255)

                      gTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTg                                                                   >  2:2776925/1‑93 (MQ=255)

                       tGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGa                                                                  <  1:1515067/93‑1 (MQ=255)

                         cGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGaaa                                                                <  2:3738411/93‑1 (MQ=255)

                           gTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAAtt                                                              >  2:3655741/1‑93 (MQ=255)

                           gTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAAtt                                                              <  1:3910932/93‑1 (MQ=255)

                           gTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAAtt                                                              <  1:3780717/93‑1 (MQ=255)

                            tAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAAttt                                                             <  1:6321001/93‑1 (MQ=255)

                              aCAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTa                                                           <  1:4789353/93‑1 (MQ=255)

                                 aTCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTTAAAACATAATCTCTGCGGGTGAAATTTTACGt                                                        >  1:2709413/1‑93 (MQ=255)

                                 aTCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGt                                                        <  1:2877528/93‑1 (MQ=255)

                                    cTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGa                                                     >  2:131958/1‑93 (MQ=255)

                                    cTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGa                                                     >  1:596623/1‑93 (MQ=255)

                                     tttACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGAt                                                    <  2:3332180/93‑1 (MQ=255)

                                       tACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATAc                                                  <  1:5322521/93‑1 (MQ=255)

                                       tACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATAc                                                  <  2:6175518/93‑1 (MQ=255)

                                       tACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATAc                                                  <  1:4542079/93‑1 (MQ=255)

                                       tACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATAc                                                  <  2:2584122/93‑1 (MQ=255)

                                       tACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATAc                                                  >  2:443975/1‑93 (MQ=255)

                                       tACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATAc                                                  <  2:4664155/93‑1 (MQ=255)

                                        aCTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACt                                                 >  2:5547962/1‑93 (MQ=255)

                                          tCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGc                                               >  2:4119025/1‑93 (MQ=255)

                                          tCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGc                                               <  2:2045231/93‑1 (MQ=255)

                                          tCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGc                                               >  1:3267773/1‑93 (MQ=255)

                                             gTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCaaa                                            >  1:1601535/1‑93 (MQ=255)

                                             gTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCaaa                                            >  1:1887821/1‑93 (MQ=255)

                                              taataaTATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAAc                                           <  2:2210577/93‑1 (MQ=255)

                                                     atTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATaaa                                    <  1:4519387/93‑1 (MQ=255)

                                                      tttCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATaaaa                                   >  1:97598/1‑93 (MQ=255)

                                                       ttCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATaaaaa                                  <  2:3262924/93‑1 (MQ=255)

                                                       ttCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATaaaaa                                  <  1:6040786/93‑1 (MQ=255)

                                                       ttCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATaaaaa                                  <  1:1537415/93‑1 (MQ=255)

                                                         cAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATg                                <  2:3605629/93‑1 (MQ=255)

                                                         cAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATg                                <  2:1624040/93‑1 (MQ=255)

                                                         cAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATg                                <  1:481764/93‑1 (MQ=255)

                                                         cAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATg                                >  2:2071433/1‑93 (MQ=255)

                                                          aGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATgg                               <  2:3620732/93‑1 (MQ=255)

                                                          aGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATgg                               <  1:1039275/93‑1 (MQ=255)

                                                            tgtTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCg                             <  1:4674988/93‑1 (MQ=255)

                                                             gtTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGa                            >  1:778008/1‑93 (MQ=255)

                                                              ttCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGAt                           >  1:1373074/1‑93 (MQ=255)

                                                                cTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGAtac                         >  1:6222925/1‑91 (MQ=255)

                                                                cTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATcc                         <  2:4090481/93‑1 (MQ=255)

                                                                cTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATcc                         >  2:4774674/1‑93 (MQ=255)

                                                                    gcgcACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTc                     <  1:3121182/93‑1 (MQ=255)

                                                                    gcgcACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTc                     >  2:4849286/1‑93 (MQ=255)

                                                                    gcgcACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTc                     >  1:292357/1‑93 (MQ=255)

                                                                      gcACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCg                   <  1:1306006/93‑1 (MQ=255)

                                                                       cACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGc                  >  1:2589791/1‑93 (MQ=255)

                                                                       cACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGc                  >  2:3686644/1‑93 (MQ=255)

                                                                          gcgcTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGcaca               >  1:4053277/1‑93 (MQ=255)

                                                                          gcgcTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGcaca               <  2:1032592/93‑1 (MQ=255)

                                                                          gcgcTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGcaca               >  1:4992515/1‑93 (MQ=255)

                                                                          gcgcTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGcaca               >  2:5056050/1‑93 (MQ=255)

                                                                           cgcTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACAt              <  2:5393347/93‑1 (MQ=255)

                                                                            gcTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACAtt             >  1:2120744/1‑93 (MQ=255)

                                                                            gcTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACAtt             <  2:2823729/93‑1 (MQ=255)

                                                                             ctctATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTg            >  2:3806902/1‑93 (MQ=255)

                                                                             ctctATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTg            >  1:4260417/1‑93 (MQ=255)

                                                                             ctctATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTg            <  1:3572344/93‑1 (MQ=255)

                                                                              tctATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGc           <  1:5212456/93‑1 (MQ=255)

                                                                              tctATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGc           >  1:5449170/1‑93 (MQ=255)

                                                                               ctATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGcc          <  2:2549239/93‑1 (MQ=255)

                                                                                tataTTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCCa         <  2:5684848/93‑1 (MQ=255)

                                                                                tataTTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCCa         <  1:241307/93‑1 (MQ=255)

                                                                                tataTTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCCa         >  2:2108553/1‑93 (MQ=255)

                                                                                tataTTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCCa         >  1:3502721/1‑93 (MQ=255)

                                                                                tataTTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCCa         >  1:4400603/1‑93 (MQ=255)

                                                                                tataTTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCCa         >  1:5122884/1‑93 (MQ=255)

                                                                                 atatTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCCAt        >  1:2092908/1‑93 (MQ=255)

                                                                                  tatTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCCATg       >  1:605003/1‑93 (MQ=255)

                                                                                   atTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCCATGc      >  1:2223414/1‑93 (MQ=255)

                                                                                    tttATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCCATGCt     >  2:4978460/1‑93 (MQ=255)

                                                                                    tttATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCCATGCt     >  2:1333910/1‑93 (MQ=255)

                                                                                    tttATGACTAAAAACATAATCTCTGCGGGTGAAATGTTACGTTGATACTGCAAGCCAATAAAAATGGCGATCCGTTCCGCACATTGCCATGCt     <  1:4896504/93‑1 (MQ=255)

                                                                                     ttATGACTAAAATCATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCCATGCtt    <  2:6060027/93‑1 (MQ=255)

                                                                                      tATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCCATGCTTg   <  2:3384461/93‑1 (MQ=255)

                                                                                       aTGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCCATGCTTGc  >  2:291454/1‑93 (MQ=255)

TTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCCATGCTTGC  >  NC_000913/3903303‑3903482

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCCATGCTTGCGGGT  >  NC_000913/3903300‑3903486

ATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGA                                                                                               <  SRR4302534.3313397/94‑1 (MQ=60)

ATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGA                                                                                               <  SRR4302534.4712449/94‑1 (MQ=60)

  TTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGCTCTTTGCGCACGCGCTCTATATTTATGACT                                                                                             <  SRR4302534.105989/94‑1 (MQ=60)

   TTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTA                                                                                            <  SRR4302534.2985998/94‑1 (MQ=60)

      TTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAA                                                                                         <  SRR4302534.3347816/94‑1 (MQ=60)

      TTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAA                                                                                         <  SRR4302534.2201375/94‑1 (MQ=60)

          GGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACAT                                                                                     >  SRR4302534.3170894/1‑94 (MQ=60)

           GTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATA                                                                                    >  SRR4302534.4652261/1‑94 (MQ=60)

            TTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAA                                                                                   <  SRR4302534.3262905/94‑1 (MQ=60)

             TTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAAT                                                                                  <  SRR4302534.1288576/94‑1 (MQ=60)

               TGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCT                                                                                >  SRR4302534.448759/1‑94 (MQ=60)

               TGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCT                                                                                <  SRR4302534.1747954/94‑1 (MQ=60)

               TGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCT                                                                                <  SRR4302534.6612125/94‑1 (MQ=60)

               TGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGAGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCT                                                                                <  SRR4302534.5311921/94‑1 (MQ=60)

                 CCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCT                                                                              <  SRR4302534.1017908/94‑1 (MQ=60)

                 CCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCT                                                                              >  SRR4302534.4298242/1‑94 (MQ=60)

                 CCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCT                                                                              >  SRR4302534.1850347/1‑94 (MQ=60)

                  CCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTG                                                                             <  SRR4302534.3631182/94‑1 (MQ=60)

                   CGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGC                                                                            >  SRR4302534.1612929/1‑94 (MQ=60)

                     CTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGG                                                                          <  SRR4302534.2533150/94‑1 (MQ=60)

                     CTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGG                                                                          >  SRR4302534.3118977/1‑94 (MQ=60)

                      TTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGG                                                                         >  SRR4302534.5292937/1‑94 (MQ=60)

                        AGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTG                                                                       >  SRR4302534.3250322/1‑94 (MQ=60)

                        AGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTG                                                                       <  SRR4302534.4276824/94‑1 (MQ=60)

                        AGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTG                                                                       <  SRR4302534.6010585/94‑1 (MQ=60)

                          TGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAA                                                                     <  SRR4302534.1554879/94‑1 (MQ=60)

                          TGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAA                                                                     >  SRR4302534.5665843/1‑94 (MQ=60)

                            CGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAAT                                                                   >  SRR4302534.6185425/1‑94 (MQ=60)

                             GGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATT                                                                  <  SRR4302534.5072947/94‑1 (MQ=60)

                              GTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTT                                                                 <  SRR4302534.4015797/94‑1 (MQ=60)

                              GTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTT                                                                 <  SRR4302534.3882228/94‑1 (MQ=60)

                               TAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTT                                                                >  SRR4302534.2018660/1‑94 (MQ=60)

                               TAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTT                                                                >  SRR4302534.4169075/1‑94 (MQ=60)

                               TAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTT                                                                <  SRR4302534.6491813/94‑1 (MQ=60)

                               TAACAATCCTTTACTCAGTAATAATATGTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTT                                                                <  SRR4302534.2482006/94‑1 (MQ=60)

                                AACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTA                                                               >  SRR4302534.5460359/1‑94 (MQ=60)

                                 ACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTAC                                                              <  SRR4302534.4919396/94‑1 (MQ=60)

                                 ACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTAC                                                              <  SRR4302534.6073825/94‑1 (MQ=60)

                                 ACAATCCTTTACTCACTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTAC                                                              >  SRR4302534.974297/1‑94 (MQ=60)

                                   AATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTTAAAACATAATCTCTGCGGGTGAAATTTTACGT                                                            >  SRR4302534.2780945/1‑94 (MQ=60)

                                    ATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTT                                                           >  SRR4302534.1439560/1‑94 (MQ=60)

                                    ATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTT                                                           <  SRR4302534.2953065/94‑1 (MQ=60)

                                     TCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTG                                                          <  SRR4302534.1567695/94‑1 (MQ=60)

                                     TCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTG                                                          <  SRR4302534.4598123/94‑1 (MQ=60)

                                     TCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTG                                                          <  SRR4302534.2587447/94‑1 (MQ=60)

                                     TCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTG                                                          <  SRR4302534.1123421/94‑1 (MQ=60)

                                      CCTTTACTCCGTAATAATATATCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGA                                                         >  SRR4302534.6443092/1‑94 (MQ=60)

                                      CCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGA                                                         >  SRR4302534.611175/1‑94 (MQ=60)

                                       CTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGAT                                                        >  SRR4302534.6377770/1‑94 (MQ=60)

                                          TACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACT                                                     <  SRR4302534.4665210/94‑1 (MQ=60)

                                          TACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACT                                                     <  SRR4302534.6210933/94‑1 (MQ=60)

                                          TACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACT                                                     <  SRR4302534.5466073/94‑1 (MQ=60)

                                            CTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGC                                                   >  SRR4302534.3354812/1‑94 (MQ=60)

                                            CTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGC                                                   <  SRR4302534.957748/94‑1 (MQ=60)

                                              CAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAA                                                 >  SRR4302534.4797440/1‑94 (MQ=60)

                                               AGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATatcttcggggggaattttttttttttttttttaa                                                >  SRR4302534.4398107/1‑60 (MQ=60)

                                               AGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAA                                                >  SRR4302534.1643378/1‑94 (MQ=60)

                                               AGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAA                                                >  SRR4302534.1937044/1‑94 (MQ=60)

                                                GTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAAC                                               <  SRR4302534.5533947/94‑1 (MQ=60)

                                                   ATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAA                                            >  SRR4302534.5065140/1‑94 (MQ=60)

                                                       TATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAA                                        >  SRR4302534.4868570/1‑94 (MQ=60)

                                                       TATTTCAGTGTTCTTTGCGCACGCGCTCCATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAA                                        >  SRR4302534.3059061/1‑94 (MQ=60)

                                                        ATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAA                                       >  SRR4302534.100205/1‑94 (MQ=60)

                                                        ATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAA                                       <  SRR4302534.4641813/94‑1 (MQ=60)

                                                          TTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAAT                                     <  SRR4302534.1577729/94‑1 (MQ=60)

                                                          TTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAAT                                     <  SRR4302534.6204977/94‑1 (MQ=60)

                                                          TTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAAT                                     >  SRR4302534.1888696/1‑94 (MQ=60)

                                                           TCAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATG                                    <  SRR4302534.2768944/94‑1 (MQ=60)

                                                            CAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGG                                   <  SRR4302534.2369055/94‑1 (MQ=60)

                                                            CAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGG                                   <  SRR4302534.493843/94‑1 (MQ=60)

                                                            CAGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGG                                   <  SRR4302534.1903938/94‑1 (MQ=60)

                                                             AGTGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGC                                  <  SRR4302534.1066097/94‑1 (MQ=60)

                                                               TGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGA                                >  SRR4302534.797399/1‑94 (MQ=60)

                                                               TGTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGA                                <  SRR4302534.4801887/94‑1 (MQ=60)

                                                                GTTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGAT                               >  SRR4302534.1409253/1‑94 (MQ=60)

                                                                 TTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATC                              <  SRR4302534.2780691/94‑1 (MQ=60)

                                                                 TTCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATC                              >  SRR4302534.4990569/1‑94 (MQ=60)

                                                                  TCTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATAC                             >  SRR4302534.6391919/1‑94 (MQ=60)

                                                                   CTTTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCG                            <  SRR4302534.1358668/94‑1 (MQ=60)

                                                                   CTTGGCGCACGCGCTCTATATTTATGACTAAAAACATAACCTCTGCGGGTAAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCG                            <  SRR4302534.3689760/94‑1 (MQ=60)

                                                                     TTGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTT                          <  SRR4302534.4492506/94‑1 (MQ=60)

                                                                      TGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTC                         >  SRR4302534.299919/1‑94 (MQ=60)

                                                                      TGCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTC                         <  SRR4302534.2156777/94‑1 (MQ=60)

                                                                       GCGCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCC                        <  SRR4302534.3203242/94‑1 (MQ=60)

                                                                         GCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGC                      >  SRR4302534.2658345/1‑94 (MQ=60)

                                                                         GCACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGC                      <  SRR4302534.1340454/94‑1 (MQ=60)

                                                                          CACGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCA                     >  SRR4302534.713909/1‑94 (MQ=60)

                                                                            CGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACA                   >  SRR4302534.4161993/1‑94 (MQ=60)

                                                                            CGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACA                   >  SRR4302534.5127558/1‑94 (MQ=60)

                                                                            CGCGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACA                   >  SRR4302534.6021567/1‑94 (MQ=60)

                                                                              CGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATT                 >  SRR4302534.2176572/1‑94 (MQ=60)

                                                                              CGCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATT                 <  SRR4302534.3550876/94‑1 (MQ=60)

                                                                               GCTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTG                >  SRR4302534.4375477/1‑94 (MQ=60)

                                                                                CTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGC               <  SRR4302534.280970/94‑1 (MQ=60)

                                                                                CTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGC               >  SRR4302534.5595984/1‑94 (MQ=60)

                                                                                CTCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGC               <  SRR4302534.3668431/94‑1 (MQ=60)

                                                                                 TCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCC              <  SRR4302534.6499916/94‑1 (MQ=60)

                                                                                 TCTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCC              <  SRR4302534.5353130/94‑1 (MQ=60)

                                                                                  CTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCCA             >  SRR4302534.4519330/1‑94 (MQ=60)

                                                                                  CTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCCA             >  SRR4302534.5261204/1‑94 (MQ=60)

                                                                                  CTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCCA             >  SRR4302534.3596945/1‑94 (MQ=60)

                                                                                  CTATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCCA             >  SRR4302534.1310073/1‑94 (MQ=60)

                                                                                   TATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCCAT            <  SRR4302534.247622/94‑1 (MQ=60)

                                                                                   TATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCCAT            >  SRR4302534.2147794/1‑94 (MQ=60)

                                                                                   TATAATTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCCAT            <  SRR4302534.5243323/94‑1 (MQ=60)

                                                                                    ATATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCCATG           >  SRR4302534.619729/1‑94 (MQ=60)

                                                                                     TATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCCATGC          >  SRR4302534.2282298/1‑94 (MQ=60)

                                                                                     TATTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCCATGC          >  SRR4302534.3968702/1‑94 (MQ=60)

                                                                                      ATTTATGACTAAAAACATAATCTCTGCGGGCGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCCATGCT         >  SRR4302534.5275747/1‑94 (MQ=60)

                                                                                       TTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCCATGCTT        <  SRR4302534.3541049/94‑1 (MQ=60)

                                                                                       TTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCCATGCTT        <  SRR4302534.4044657/94‑1 (MQ=60)

                                                                                       TTTATGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCCATGCTT        <  SRR4302534.4940964/94‑1 (MQ=60)

                                                                                       TTTATGACTAAAAACATAATCTCTGCGGGTGAAATGTTACGTTGATACTGCAAGCCAATAAAAATGGCGATCCGTTCCGCACATTGCCATGCTT        <  SRR4302534.5029258/94‑1 (MQ=60)

                                                                                           TGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCCATGCTTGCGG    >  SRR4302534.5781400/1‑94 (MQ=60)

                                                                                           TGACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCCATGCTTGCGG    >  SRR4302534.3022503/1‑94 (MQ=60)

                                                                                            GACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCCATGCTTGCGGG   >  SRR4302534.4710842/1‑94 (MQ=60)

                                                                                            GACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCCATGCTTGCGGG   >  SRR4302534.2060091/1‑94 (MQ=60)

                                                                                             ACTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCCATGCTTGCGGGT  >  SRR4302534.3699317/1‑94 (MQ=60)

ATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATATTTATGGCTAAAAACATAATCTCTGCGGGTGAAATTTTACGTTGATACTGCAAACCAATAAAAATGGCGATCCGTTCCGCACATTGCCATGCTTGCGGGT  >  NC_000913/3903300‑3903486

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`