Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,923,014	A→G	I83T (ATA→ACA)	gidA ←	glucose‑inhibited division

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,923,014	0	A	G	100.0%	752.6 / NA	211	I83T (ATA→ACA)	gidA	glucose‑inhibited division
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (95/116); total (95/116)

Only 100 of 217 total aligned reads displayed.

TCCAGCGCCGTACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTATCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGATGTCCCTTCCCAAT  >  NC_000913/3922924‑3923102

tcCAGCGCCGTACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTc                                                                                        >  2:2969825/1‑93 (MQ=255)

tcCAGCGCCGTACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTc                                                                                        >  2:1134987/1‑93 (MQ=255)

tcCAGCGCCGTACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTc                                                                                        <  1:3149968/93‑1 (MQ=255)

tcCAGCCCCGTACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTc                                                                                        <  2:1473452/93‑1 (MQ=255)

 ccAGCGCCGTACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTcc                                                                                       <  1:712386/93‑1 (MQ=255)

  cAGCGCCGTACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCt                                                                                      >  1:3497609/1‑93 (MQ=255)

   aGCGCCGTACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTa                                                                                     >  2:1647259/1‑93 (MQ=255)

   aGCGCCGTACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTa                                                                                     >  1:4563459/1‑93 (MQ=255)

    gcgcCGTACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTTCGTTTAGTGTCCTaa                                                                                    >  1:164201/1‑93 (MQ=255)

    gcgcCGTACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTaa                                                                                    >  1:4662080/1‑93 (MQ=255)

     cgcCGTACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTaaa                                                                                   <  2:833622/93‑1 (MQ=255)

      gcCGTACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAAc                                                                                  <  1:1902851/93‑1 (MQ=255)

       ccGTACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACt                                                                                 <  1:1871091/93‑1 (MQ=255)

       ccGTACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACt                                                                                 >  2:3145313/1‑93 (MQ=255)

          tacgtacCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGa                                                                              <  2:4622726/93‑1 (MQ=255)

           acgtacCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGAt                                                                             >  2:2434314/1‑93 (MQ=255)

           acgtacCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGAt                                                                             <  1:4916371/93‑1 (MQ=255)

             gtgccGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATAc                                                                           <  2:3572977/90‑1 (MQ=255)

             gtacCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATAc                                                                           >  2:2737926/1‑93 (MQ=255)

              tacCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATAcc                                                                          <  2:239756/93‑1 (MQ=255)

               acCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATAccc                                                                         >  1:666578/1‑93 (MQ=255)

               acCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATAccc                                                                         <  2:3870329/93‑1 (MQ=255)

                 cGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGc                                                                       >  2:4220455/1‑93 (MQ=255)

                 cGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGc                                                                       <  1:5563796/93‑1 (MQ=255)

                  gCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGcc                                                                      <  1:3998172/93‑1 (MQ=255)

                  gCCGGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGcc                                                                      <  1:2421602/93‑1 (MQ=255)

                   ccTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCt                                                                     <  1:5997837/93‑1 (MQ=255)

                    cTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTg                                                                    <  2:3523100/93‑1 (MQ=255)

                     tGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTCGATACCCGCCTga                                                                   >  1:114064/1‑93 (MQ=255)

                      gACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTgat                                                                  >  2:1433356/1‑93 (MQ=255)

                       aCGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTgatc                                                                 >  2:5154112/1‑93 (MQ=255)

                       aCGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTgatc                                                                 <  2:3531429/93‑1 (MQ=255)

                         ggTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTgatcga                                                               <  1:369996/93‑1 (MQ=255)

                         ggTAGAGCACACGATCCGCCGGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTgatcga                                                               <  1:2236939/93‑1 (MQ=255)

                          gTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTgatcgat                                                              <  2:2596355/93‑1 (MQ=255)

                          gTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTgatcgat                                                              >  2:6141667/1‑93 (MQ=255)

                           tAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTgatcgatc                                                             <  2:2108667/93‑1 (MQ=255)

                           tAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTgatcgatc                                                             <  1:5373649/93‑1 (MQ=255)

                           tAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTgatcgatc                                                             <  2:2238310/93‑1 (MQ=255)

                             gagCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGc                                                           >  2:5913201/1‑93 (MQ=255)

                              agCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCt                                                          <  1:2554639/93‑1 (MQ=255)

                              agCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCt                                                          <  2:3461261/93‑1 (MQ=255)

                                cacaCGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCttt                                                        >  2:2896945/1‑93 (MQ=255)

                                cacaCGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCttt                                                        <  2:1357605/93‑1 (MQ=255)

                                 ccacGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTc                                                       <  2:1582615/92‑1 (MQ=255)

                                 acacGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTc                                                       >  1:5093165/1‑93 (MQ=255)

                                     gATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCa                                                   >  2:4759572/1‑93 (MQ=255)

                                     caTCCCCCTGAGCTCGTGTAGCACGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCa                                                   <  2:2081823/92‑1 (MQ=255)

                                          gCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGa                                              >  1:2011803/1‑93 (MQ=255)

                                          gCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGa                                              <  2:6229208/93‑1 (MQ=255)

                                           ccTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGAc                                             >  1:3015622/1‑93 (MQ=255)

                                           ccTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGAc                                             >  2:1680623/1‑93 (MQ=255)

                                            cggAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGAcc                                            <  2:510776/91‑1 (MQ=255)

                                             tGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGAccg                                           >  1:1430545/1‑93 (MQ=255)

                                              gAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGAccgc                                          <  1:4867969/93‑1 (MQ=255)

                                              gAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGAccgc                                          >  1:2975269/1‑93 (MQ=255)

                                              gAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGAccgc                                          >  1:1293535/1‑93 (MQ=255)

                                               aGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCTCTTTCGCCATCAGAccgcc                                         >  1:3362948/1‑93 (MQ=255)

                                               aGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGAccgcc                                         >  2:2130723/1‑93 (MQ=255)

                                                 cTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGa                                       >  2:1836575/1‑93 (MQ=255)

                                                 cTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGa                                       <  2:533627/93‑1 (MQ=255)

                                                 cTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGa                                       <  1:1537185/93‑1 (MQ=255)

                                                  tCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACTCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAg                                      >  1:3922412/1‑93 (MQ=255)

                                                   cacgTAGCGCGAACCGCCGCTCCTTTGCGTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCGTTCGCCATCAGACCGCCGAGt                                     <  1:1836514/90‑1 (MQ=255)

                                                   cGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGt                                     <  2:4029292/93‑1 (MQ=255)

                                                    gggTAGCGCGAGCCGCCGGTCCTTTGCTTGCGTTTAGTGGCCTAAACTGGATGCCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTg                                    <  1:2477309/93‑1 (MQ=255)

                                                    gggTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTGAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGGGTg                                    >  1:3811436/1‑93 (MQ=255)

                                                         gcgcGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATcc                               <  1:2989026/93‑1 (MQ=255)

                                                         gcgcGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATcc                               >  2:4851694/1‑93 (MQ=255)

                                                          cgcgAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCa                              <  1:986755/93‑1 (MQ=255)

                                                           gcgAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCAc                             <  2:674450/93‑1 (MQ=255)

                                                             gacccgccgGTCCTTTGCTGGCGTTTAGCGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCAACAGACCGCCGAGTGCATCCTctt                           <  2:2790202/90‑1 (MQ=255)

                                                             gAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCActt                           >  1:6018011/1‑93 (MQ=255)

                                                              aaCCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCActtc                          >  2:6053050/1‑93 (MQ=255)

                                                              aaCCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCActtc                          <  1:6336688/93‑1 (MQ=255)

                                                              aaCCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCActtc                          >  2:5484832/1‑93 (MQ=255)

                                                               aCCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCActtct                         <  2:5871355/93‑1 (MQ=255)

                                                               aCCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCActtct                         >  2:4999422/1‑93 (MQ=255)

                                                               aCCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCActtct                         >  2:3088085/1‑93 (MQ=255)

                                                                ccgccgGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCActtctt                        >  1:5823366/1‑93 (MQ=255)

                                                                   ccgGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTa                     >  1:2582992/1‑93 (MQ=255)

                                                                   ccgGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTa                     >  1:2744636/1‑93 (MQ=255)

                                                                      gtacTTTGCTTGCGTTTAGTGACCTAAACTGGATCCCCGCCTGATCGATCGCTTTCACCATCAGACCGCCGAGTGCATCCACTTCTTTTACCa                  <  2:893315/90‑1 (MQ=255)

                                                                      gTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCACCATCAGACCGCCGAGTGCATCCACTTCTTTTACCa                  <  1:2376757/93‑1 (MQ=255)

                                                                       tCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAg                 >  1:1577786/1‑93 (MQ=255)

                                                                        ccTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGa                >  2:6366160/1‑93 (MQ=255)

                                                                        ccTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGa                >  1:4486217/1‑93 (MQ=255)

                                                                        ccTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGa                >  2:1985401/1‑93 (MQ=255)

                                                                         cTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGAt               >  1:4303924/1‑93 (MQ=255)

                                                                         cTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGAt               <  1:1060270/93‑1 (MQ=255)

                                                                         cTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGAt               >  2:3656082/1‑93 (MQ=255)

                                                                           ttgcttgcGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGATGt             >  1:2888240/1‑93 (MQ=255)

                                                                            tgcttgcGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGATGTc            >  2:4467895/1‑93 (MQ=255)

                                                                             gcttgcGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGATGTcc           <  2:4769459/93‑1 (MQ=255)

                                                                              cttgcGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGATGTcca          <  1:4206843/93‑2 (MQ=255)

                                                                               ttgcGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGATGTCCCt         <  1:52853/93‑1 (MQ=255)

                                                                                tgcGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGATGTCCCtt        <  2:690749/93‑1 (MQ=255)

                                                                                 gcGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGATGTCCCTTc       >  1:2500244/1‑93 (MQ=255)

                                                                                  cGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGATGTCCCTTcc      <  1:441791/93‑1 (MQ=255)

                                                                                      tAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGATGTCCCTTCCCAAt  <  2:737880/93‑1 (MQ=255)

TCCAGCGCCGTACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTATCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGATGTCCCTTCCCAAT  >  NC_000913/3922924‑3923102

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTCTCCAGCGCCGTACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTATCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGATGTCCCTTCCCAATACCG  >  NC_000913/3922921‑3923106

TTCTCCAGCGCCGTCCGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTG                                                                                              <  SRR4302534.3832231/94‑1 (MQ=60)

TTCTCCAGCGCCGTACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTG                                                                                              <  SRR4302534.2611277/94‑1 (MQ=60)

TTCCCCAGCGCCGTACGTACCGCCGGACGGTAGAGCACACGATCCGCCTGAGCTCGTGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTG                                                                                              <  SRR4302534.4739664/94‑1 (MQ=60)

 TCTCCAGCGCCGTACGTCCCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGT                                                                                             <  SRR4302534.3673364/94‑1 (MQ=60)

 TCTCCAGCGCCGTACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGT                                                                                             >  SRR4302534.4877604/1‑94 (MQ=60)

 TCTCCAGCGCCGTACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGT                                                                                             >  SRR4302534.414988/1‑94 (MQ=60)

  CTCCAGCGCCGTACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTC                                                                                            >  SRR4302534.1946361/1‑94 (MQ=60)

   TCCAGCGCCGTACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCC                                                                                           <  SRR4302534.3232863/94‑1 (MQ=60)

    CCAGCGCCGTACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCT                                                                                          <  SRR4302534.729899/94‑1 (MQ=60)

    CCAGCGCCGTACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCT                                                                                          >  SRR4302534.3591668/1‑94 (MQ=60)

     CAGCGCCGTACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTA                                                                                         <  SRR4302534.4183934/94‑1 (MQ=60)

     CAGCGCCGTACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTA                                                                                         >  SRR4302534.4687181/1‑94 (MQ=60)

     CAGCGCCGTACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTA                                                                                         <  SRR4302534.587360/94‑1 (MQ=60)

     CAGCGCCGTACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTA                                                                                         >  SRR4302534.5548677/1‑94 (MQ=60)

      AGCGCCGTACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTTCGTTTAGTGTCCTAA                                                                                        >  SRR4302534.168502/1‑94 (MQ=60)

      AGCGCCGTACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAA                                                                                        <  SRR4302534.3205908/94‑1 (MQ=60)

      AGCGCCGTACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAA                                                                                        >  SRR4302534.455049/1‑94 (MQ=60)

      AGCGCCGTACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAA                                                                                        >  SRR4302534.4788654/1‑94 (MQ=60)

       GCGCCGTACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAA                                                                                       <  SRR4302534.4017263/94‑1 (MQ=60)

        CGCCGTACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAAC                                                                                      >  SRR4302534.3377026/1‑94 (MQ=60)

         GCCGTACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACT                                                                                     <  SRR4302534.1952482/94‑1 (MQ=60)

          CCGTACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTG                                                                                    <  SRR4302534.1919777/94‑1 (MQ=60)

              ACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATA                                                                                <  SRR4302534.5049622/94‑1 (MQ=60)

              ACGTACCGCCTGACGGTAGAGCACACGACCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATA                                                                                <  SRR4302534.1895547/94‑1 (MQ=60)

                GTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACC                                                                              <  SRR4302534.4819875/94‑1 (MQ=60)

                 TACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCC                                                                             >  SRR4302534.682802/1‑94 (MQ=60)

                  TCCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCG                                                                            <  SRR4302534.2434883/94‑1 (MQ=60)

                  ACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCG                                                                            >  SRR4302534.2430082/1‑94 (MQ=60)

                    CGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCC                                                                          <  SRR4302534.4240671/94‑1 (MQ=60)

                    CGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCC                                                                          <  SRR4302534.5714026/94‑1 (MQ=60)

                     GCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCT                                                                         <  SRR4302534.4105200/94‑1 (MQ=60)

                     GCCGGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCT                                                                         <  SRR4302534.2485999/94‑1 (MQ=60)

                      GCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTG                                                                        <  SRR4302534.1132804/94‑1 (MQ=60)

                      CCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTG                                                                        <  SRR4302534.6160780/94‑1 (MQ=60)

                       CTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTCGATACCCGCCTGA                                                                       >  SRR4302534.117102/1‑94 (MQ=60)

                           CGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGA                                                                   <  SRR4302534.2116187/94‑1 (MQ=60)

                            GGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGAT                                                                  <  SRR4302534.379426/94‑1 (MQ=60)

                            GGTAGAGCACACGATCCGCCGGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGAT                                                                  <  SRR4302534.2296214/94‑1 (MQ=60)

                             gtaaacgACACGATCCCCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATC                                                                 <  SRR4302534.285273/87‑1 (MQ=60)

                              TAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCG                                                                <  SRR4302534.5518454/94‑1 (MQ=60)

                              TAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCG                                                                <  SRR4302534.3430552/94‑1 (MQ=60)

                                 AGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTT                                                             <  SRR4302534.2622351/94‑1 (MQ=60)

                                   CACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTC                                                           >  SRR4302534.2607570/1‑94 (MQ=60)

                                   CACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTC                                                           <  SRR4302534.2790643/94‑1 (MQ=60)

                                   CACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTC                                                           >  SRR4302534.5230651/1‑94 (MQ=60)

                                    CCACGACCCGCCTGAGCCCGGGAAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCG                                                          <  SRR4302534.5601828/94‑1 (MQ=60)

                                          TCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCA                                                    <  SRR4302534.2643806/94‑1 (MQ=60)

                                           CCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAG                                                   <  SRR4302534.308775/94‑1 (MQ=60)

                                           CCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAG                                                   <  SRR4302534.742114/94‑1 (MQ=60)

                                            CGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGA                                                  >  SRR4302534.2064436/1‑94 (MQ=60)

                                            CGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGATTTCGCCATCAGA                                                  >  SRR4302534.3019499/1‑94 (MQ=60)

                                             GCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGAC                                                 >  SRR4302534.3094566/1‑94 (MQ=60)

                                               CTGAGCTCGGGTAGCGCGACCCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAACCTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCG                                               <  SRR4302534.4508238/94‑1 (MQ=60)

                                               CTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCG                                               >  SRR4302534.1468194/1‑94 (MQ=60)

                                               CTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCG                                               >  SRR4302534.1585598/1‑94 (MQ=60)

                                               CTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCG                                               <  SRR4302534.672359/94‑1 (MQ=60)

                                               CGGAGCTCGGGTAGCGCGACCCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCG                                               <  SRR4302534.2652887/94‑1 (MQ=60)

                                                TGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGC                                              >  SRR4302534.1327599/1‑94 (MQ=60)

                                                TGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGC                                              >  SRR4302534.3053148/1‑94 (MQ=60)

                                                 GAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCTCTTTCGCCATCAGACCGCC                                             >  SRR4302534.3453018/1‑94 (MQ=60)

                                                 GAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCC                                             >  SRR4302534.5736608/1‑94 (MQ=60)

                                                 GAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCC                                             >  SRR4302534.3060374/1‑94 (MQ=60)

                                                 GAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCC                                             <  SRR4302534.5000018/94‑1 (MQ=60)

                                                  AGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCG                                            <  SRR4302534.4098658/94‑1 (MQ=60)

                                                    CTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACTCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAG                                          >  SRR4302534.4027515/1‑94 (MQ=60)

                                                    CTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAG                                          <  SRR4302534.816617/94‑1 (MQ=60)

                                                    CTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAG                                          <  SRR4302534.1577495/94‑1 (MQ=60)

                                                      cacGTAGCGCGAACCGCCGCTCCTTTGCGTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCGTTCGCCATCAGACCGCCGAGTG                                        <  SRR4302534.1884262/91‑1 (MQ=60)

                                                      CGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTGAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGGGTG                                        >  SRR4302534.3913780/1‑94 (MQ=60)

                                                       GGGTAGCGCGAGCCGCCGGTCCTTTGCTTGCGTTTAGTGGCCTAAACTGGATGCCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGC                                       <  SRR4302534.2543139/94‑1 (MQ=60)

                                                           AGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCC                                   <  SRR4302534.1957267/94‑1 (MQ=60)

                                                            GCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCA                                  <  SRR4302534.3067177/94‑1 (MQ=60)

                                                             CGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCAC                                 <  SRR4302534.1011976/94‑1 (MQ=60)

                                                              GCGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACT                                >  SRR4302534.2561264/1‑94 (MQ=60)

                                                               CGAACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTT                               >  SRR4302534.6181527/1‑94 (MQ=60)

                                                                 AACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCT                             <  SRR4302534.4617438/94‑1 (MQ=60)

                                                                 AACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCT                             <  SRR4302534.6507866/94‑1 (MQ=60)

                                                                  ACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTT                            >  SRR4302534.5981429/1‑94 (MQ=60)

                                                                  ACCGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTT                            >  SRR4302534.695368/1‑94 (MQ=60)

                                                                    CGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTT                          >  SRR4302534.6177351/1‑94 (MQ=60)

                                                                    CGCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTT                          >  SRR4302534.3723447/1‑94 (MQ=60)

                                                                     GCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTA                         >  SRR4302534.2816929/1‑94 (MQ=60)

                                                                     GCCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTA                         >  SRR4302534.2651375/1‑94 (MQ=60)

                                                                      CCGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTAC                        <  SRR4302534.4333716/94‑1 (MQ=60)

                                                                       CGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACC                       >  SRR4302534.4766924/1‑94 (MQ=60)

                                                                       CGGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACC                       >  SRR4302534.4990032/1‑94 (MQ=60)

                                                                        GGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCA                      >  SRR4302534.1681347/1‑94 (MQ=60)

                                                                        GGTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCA                      >  SRR4302534.5107605/1‑94 (MQ=60)

                                                                         GTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAG                     >  SRR4302534.1619067/1‑94 (MQ=60)

                                                                         GTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAG                     >  SRR4302534.1482676/1‑94 (MQ=60)

                                                                         GTCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCACCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAG                     <  SRR4302534.2439887/94‑1 (MQ=60)

                                                                          TCCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGA                    >  SRR4302534.4607603/1‑94 (MQ=60)

                                                                           CCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGAT                   >  SRR4302534.4420594/1‑94 (MQ=60)

                                                                           CCTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGAT                   >  SRR4302534.5042040/1‑94 (MQ=60)

                                                                            CTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGATG                  >  SRR4302534.1184920/1‑94 (MQ=60)

                                                                            CTTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGATG                  <  SRR4302534.1087752/94‑1 (MQ=60)

                                                                             TTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGATGT                 <  SRR4302534.5325604/94‑1 (MQ=60)

                                                                             TTTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGATGT                 >  SRR4302534.2964020/1‑94 (MQ=60)

                                                                              TTGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGATGTC                <  SRR4302534.245162/94‑1 (MQ=60)

                                                                               TGCTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGATGTCC               >  SRR4302534.2493172/1‑94 (MQ=60)

                                                                                 CTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGATGTCCCT             >  SRR4302534.6150490/1‑94 (MQ=60)

                                                                                 CTTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGATGTCCAT             <  SRR4302534.4320385/94‑1 (MQ=60)

                                                                                  TTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGATGTCCCTT            <  SRR4302534.54270/94‑1 (MQ=60)

                                                                                  TTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGATGTCCCTT            <  SRR4302534.1747433/94‑1 (MQ=60)

                                                                                  TTGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGATGTCCCTT            <  SRR4302534.1384754/94‑1 (MQ=60)

                                                                                   TGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGATGTCCCTTC           >  SRR4302534.2566628/1‑94 (MQ=60)

                                                                                   TGCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGATGTCCCTTC           >  SRR4302534.381467/1‑94 (MQ=60)

                                                                                    GCGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGATGTCCCTTCC          >  SRR4302534.6198433/1‑94 (MQ=60)

                                                                                     CGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGATGTCCCTTCCC         <  SRR4302534.3502977/94‑1 (MQ=60)

                                                                                     CGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGATGTCCCTTCCC         <  SRR4302534.453019/94‑1 (MQ=60)

                                                                                     CGTTTAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGATGTCCCTTCCC         >  SRR4302534.2839625/1‑94 (MQ=60)

                                                                                         TAGTGTCCTAAACTGGATCCCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGATGTCCCTTCCCAATA     <  SRR4302534.1680031/94‑1 (MQ=60)

                                                                                         TAGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGATGTCCCTTCCCAATA     <  SRR4302534.545607/94‑1 (MQ=60)

                                                                                          AGTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGATGTCCCTTCCCAATAC    >  SRR4302534.87347/1‑94 (MQ=60)

                                                                                           GTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGATGTCCCTTCCCAATACC   <  SRR4302534.2110355/94‑1 (MQ=60)

                                                                                           GTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGATGTCCCTTCCCAATACC   >  SRR4302534.2029813/1‑94 (MQ=60)

                                                                                           GTGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGATGTCCCTTCCCAATACC   >  SRR4302534.1515210/1‑94 (MQ=60)

                                                                                            TGTCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGATGTCCCTTCCCAATACCG  <  SRR4302534.5680120/94‑1 (MQ=60)

TTCTCCAGCGCCGTACGTACCGCCTGACGGTAGAGCACACGATCCGCCTGAGCTCGGGTAGCGCGAACCGCCGGTCCTTTGCTTGCGTTTAGTATCCTAAACTGGATACCCGCCTGATCGATCGCTTTCGCCATCAGACCGCCGAGTGCATCCACTTCTTTTACCAGATGTCCCTTCCCAATACCG  >  NC_000913/3922921‑3923106

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`