Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate | Predicted Mutations | Mean Coverage | Total Reads | Percent Mapped | Mapped Reads | Average Read Length |
|---|---|---|---|---|---|---|
| A1 F1 I2 R1 | 884 | 257.2 | 12958910 | 96.9% | 12557183 | 93.0 |
Breseq alignment
| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,927,062 | +G | coding (2/1284 nt) coding (169/183 nt) |
yieM ← b4564 ← |
hypothetical protein hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,927,062 | 1 | . | G | 100.0% | 845.5 / NA | 245 | M1A (GTG→GCG) † C57R (TGC→CGC) | yieM b4564 | hypothetical protein hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (128/117); total (128/117) | |||||||||||
Only 100 of 264 total aligned reads displayed.
ACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCA‑CGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAGG > NC_000913/3926970‑3927148 | aCTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCa > 1:5974151/1‑93 (MQ=255)aCTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCa < 2:5355902/93‑1 (MQ=255) tgtgGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCagc > 2:1964959/1‑91 (MQ=255) gtgGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCagcg > 2:5064826/1‑90 (MQ=255) tgGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCagcgc < 2:2598280/93‑5 (MQ=255) tgGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCagcgc < 1:4269433/93‑5 (MQ=255) gTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCa > 1:5468937/1‑93 (MQ=255) gagaGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGc < 1:416257/93‑1 (MQ=255) gaggagCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGccc > 2:2284239/1‑92 (MQ=255) ggagCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGc > 1:4945714/1‑93 (MQ=255) ggagCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGc > 1:6097959/1‑93 (MQ=255) ggagCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGc < 2:5285412/93‑1 (MQ=255) gagCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCg > 1:3394913/1‑93 (MQ=255) agCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCgg > 1:855587/1‑93 (MQ=255) agCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCgg < 1:5499662/93‑1 (MQ=255) agCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCgg < 2:4731666/93‑1 (MQ=255) cTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCgggg < 1:2985501/93‑1 (MQ=255) tGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGa < 1:4788464/93‑1 (MQ=255) ggCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGaa > 2:4872540/1‑93 (MQ=255) agCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGaa > 1:1611922/2‑93 (MQ=255) gCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAAc < 1:5871223/93‑1 (MQ=255) gCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAAc < 2:2407102/93‑1 (MQ=255) tttGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAAcat > 2:4011816/1‑93 (MQ=255) tttGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAAcat > 2:1390953/1‑93 (MQ=255) ttGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAAcatc < 1:5164261/93‑1 (MQ=255) ttGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAAcatc < 2:1108748/93‑1 (MQ=255) tGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAAcatca < 2:1251080/93‑1 (MQ=255) tGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACAtcatca < 1:1535175/93‑1 (MQ=255) tGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACAtcatca < 1:4405157/93‑1 (MQ=255) tGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACAtcatca > 2:4947471/1‑93 (MQ=255) gATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAg > 1:2097300/1‑93 (MQ=255) gATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAg < 1:1130241/93‑1 (MQ=255) aTAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGt > 1:2411425/1‑93 (MQ=255) aTAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGt > 2:2617296/1‑93 (MQ=255) tAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCTGCGGGGAACACCATCAGTg < 1:6321427/93‑1 (MQ=255) aGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGa > 2:5967903/1‑93 (MQ=255) cacaTCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGAtt < 2:415029/93‑1 (MQ=255) acaTCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTg > 2:709770/1‑93 (MQ=255) aTCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTgcc < 1:4926272/93‑1 (MQ=255) aTCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTgcc < 2:3829553/93‑1 (MQ=255) aTCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTgcc > 2:542229/1‑93 (MQ=255) aTCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTgcc > 2:2078838/1‑93 (MQ=255) aTCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTgcc > 2:5912093/1‑93 (MQ=255) aTCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTgcc > 2:630210/1‑93 (MQ=255) tCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTgccg > 2:2521704/1‑93 (MQ=255) aCCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGGACATCATCAGTGATTgccgac > 1:2235163/1‑91 (MQ=255) aCCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTgccgcc < 2:3146418/93‑1 (MQ=255) aCCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTgccgcc > 1:1005688/1‑93 (MQ=255) ctctTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCtt > 1:5613074/1‑93 (MQ=255) ctctTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTCATTGCCGCCtt < 1:4139063/93‑1 (MQ=255) tctTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTc < 2:943085/93‑1 (MQ=255) tctTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTc < 2:5843446/93‑1 (MQ=255) tctTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTc < 2:2214485/93‑1 (MQ=255) ttCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAg > 2:1833218/1‑93 (MQ=255) ttCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAg > 1:643269/1‑93 (MQ=255) tCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAgg < 1:5345061/93‑1 (MQ=255) ggTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCg > 1:2824719/1‑93 (MQ=255) ggTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCg < 2:423152/93‑1 (MQ=255) gTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGt > 2:3659615/1‑93 (MQ=255) gTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGt > 1:4629170/1‑93 (MQ=255) tGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTg < 2:3085759/93‑1 (MQ=255) tGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTg > 1:3678561/1‑93 (MQ=255) tGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTg > 1:191451/1‑93 (MQ=255) aGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTggg > 2:4414341/1‑93 (MQ=255) tCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAAt < 1:521558/93‑1 (MQ=255) ggcggGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAAtttt > 2:33954/1‑93 (MQ=255) gcggGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAAttttt > 2:4516342/1‑93 (MQ=255) gcggGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAAttttt > 2:531354/1‑93 (MQ=255) cggGACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTc < 2:1683604/93‑1 (MQ=255) gggACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCa < 2:1397325/93‑1 (MQ=255) gggACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCa > 2:685994/1‑93 (MQ=255) gggACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCa > 1:794248/1‑93 (MQ=255) ggACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCaa > 2:1314768/1‑93 (MQ=255) ggACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCaa < 2:3311979/93‑1 (MQ=255) ggACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCaa > 1:1041654/1‑93 (MQ=255) gACTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCaaa > 1:39970/1‑93 (MQ=255) aCTCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAaag < 2:2909647/93‑1 (MQ=255) tCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAaagaa > 1:6256113/1‑93 (MQ=255) tCGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAaagaa < 1:1430004/93‑1 (MQ=255) cGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAaagaag > 1:604184/1‑93 (MQ=255) cGGGCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAaagaag < 2:3722490/93‑1 (MQ=255) gggCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAagaaga > 2:2808110/1‑93 (MQ=255) gggCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAagaaga < 1:2579860/93‑1 (MQ=255) ggCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGAc < 2:4790344/93‑1 (MQ=255) gCATCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGAcc < 1:2945078/93‑1 (MQ=255) aTCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGc < 2:4605940/93‑1 (MQ=255) tCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGcc > 2:627039/1‑93 (MQ=255) tCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGcc < 2:5621441/93‑1 (MQ=255) tCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGcc < 2:1552994/93‑1 (MQ=255) tCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGcc > 1:3138068/1‑93 (MQ=255) tCTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGcc > 1:3802336/1‑93 (MQ=255) cTTTCAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCa < 1:3611069/93‑1 (MQ=255) cAGCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTg > 1:4691388/1‑93 (MQ=255) gCCGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCg > 1:5046376/1‑93 (MQ=255) ccGACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCgg < 1:3521186/93‑1 (MQ=255) gACTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTg > 2:3034832/1‑93 (MQ=255) aCTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTTGGAATTTTTCAAAGAAGACCGGCAGCTGCGGTgg > 1:4440269/1‑92 (MQ=255) aCTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGa > 1:575713/1‑93 (MQ=255) cTGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAg < 2:5516437/93‑1 (MQ=255) tGCGCAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAgg > 1:1683716/1‑93 (MQ=255) | ACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCA‑CGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAGG > NC_000913/3926970‑3927148 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
AACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CA‑CGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAGGCCAGCAG > NC_000913/3926969‑3927155 | AACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CA > SRR4302534.6136411/1‑94 (MQ=60)AACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CA > SRR4302534.1253807/1‑94 (MQ=60)AACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CA > SRR4302534.1501655/1‑94 (MQ=60)AACTGTGGCGTGGAGAGAAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CA < SRR4302534.6271816/94‑1 (MQ=60) ACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CA‑G > SRR4302534.5656119/1‑94 (MQ=60) TGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAgcg > SRR4302534.5941500/1‑91 (MQ=60) GTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGC > SRR4302534.376487/1‑94 (MQ=60) TGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCT < SRR4302534.4384822/94‑1 (MQ=60) GGCGTGGAGGGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTT > SRR4302534.6450454/1‑94 (MQ=60) GCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTC < SRR4302534.668042/94‑1 (MQ=60) CGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCA > SRR4302534.5616351/1‑94 (MQ=60) CGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCA > SRR4302534.4281032/1‑94 (MQ=60) GTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCAC < SRR4302534.4987255/94‑1 (MQ=60) GTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCAC < SRR4302534.5068408/94‑1 (MQ=60) GAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCC < SRR4302534.426901/94‑1 (MQ=60) GAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCC > SRR4302534.1118481/1‑94 (MQ=60) GAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAG < SRR4302534.2316544/94‑1 (MQ=60) AGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGC > SRR4302534.5079702/1‑94 (MQ=60) AGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGC > SRR4302534.6263785/1‑94 (MQ=60) GGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCG > SRR4302534.3486007/1‑94 (MQ=60) GAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGG > SRR4302534.877181/1‑94 (MQ=60) GAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGG > SRR4302534.2360514/1‑94 (MQ=60) AGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGG < SRR4302534.5647977/94‑1 (MQ=60) CTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGA < SRR4302534.3063587/94‑1 (MQ=60) CTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGA < SRR4302534.4455337/94‑1 (MQ=60) TGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAA < SRR4302534.4918497/94‑1 (MQ=60) TAGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAA > SRR4302534.1653994/1‑94 (MQ=60) GGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAAC > SRR4302534.3011983/1‑94 (MQ=60) GCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACA > SRR4302534.4605218/1‑94 (MQ=60) GCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACA < SRR4302534.6030634/94‑1 (MQ=60) GCTTTGCTGATAGCACATCACCTCTTCGGCGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACA > SRR4302534.516796/1‑94 (MQ=60) TTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATC > SRR4302534.1850340/1‑94 (MQ=60) TTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCA > SRR4302534.3656329/1‑94 (MQ=60) TTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCA < SRR4302534.5303476/94‑1 (MQ=60) CTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGTCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCA < SRR4302534.2514409/94‑1 (MQ=60) TGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAG < SRR4302534.4524031/94‑1 (MQ=60) TGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAG > SRR4302534.2152321/1‑94 (MQ=60) TGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAG < SRR4302534.1575433/94‑1 (MQ=60) TGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAG < SRR4302534.6192139/94‑1 (MQ=60) TGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAG > SRR4302534.3315478/1‑94 (MQ=60) TGATAGCACATCACCTATTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAG < SRR4302534.3108823/94‑1 (MQ=60) GATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGT > SRR4302534.2475549/1‑94 (MQ=60) GATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGT < SRR4302534.1159783/94‑1 (MQ=60) GATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGT < SRR4302534.4288224/94‑1 (MQ=60) ATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTG < SRR4302534.5755084/94‑1 (MQ=60) ATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTG < SRR4302534.4772420/94‑1 (MQ=60) TAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCTGCGGGGAACACCATCAGTGA < SRR4302534.6492253/94‑1 (MQ=60) TAGCACATAACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGA > SRR4302534.6528453/1‑94 (MQ=60) GCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATT < SRR4302534.3611744/94‑1 (MQ=60) GCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATT < SRR4302534.6105435/94‑1 (MQ=60) CACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTG < SRR4302534.5464904/94‑1 (MQ=60) CACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTG > SRR4302534.6213912/1‑94 (MQ=60) CATCACCTCTTCGGCGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCGCCG‑CGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCC > SRR4302534.109902/1‑94 (MQ=60) ATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCG < SRR4302534.1649411/94‑1 (MQ=60) ATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCG < SRR4302534.5059796/94‑1 (MQ=60) CACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGGACATCATCAGTGATTGCCGAC > SRR4302534.2294382/1‑94 (MQ=60) CACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCC > SRR4302534.1031484/1‑94 (MQ=60) CACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCC > SRR4302534.4881745/1‑94 (MQ=60) CACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCC < SRR4302534.5643682/94‑1 (MQ=60) CACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCC < SRR4302534.2049693/94‑1 (MQ=60) ACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCT > SRR4302534.1697157/1‑94 (MQ=60) CCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTT < SRR4302534.468578/94‑1 (MQ=60) CCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTT > SRR4302534.5764938/1‑94 (MQ=60) CCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTT < SRR4302534.104815/94‑1 (MQ=60) CCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTT > SRR4302534.419997/1‑94 (MQ=60) CTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTC < SRR4302534.3364405/94‑1 (MQ=60) CTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTCATTGCCGCCTTC < SRR4302534.4250761/94‑1 (MQ=60) CTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAG > SRR4302534.4834776/1‑94 (MQ=60) CTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAG > SRR4302534.658879/1‑94 (MQ=60) TTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCCACTGCG‑CAGCGCTTCACGCCAGCGAGGAACATAATCAGTGATTGCCGCCTTCAGG > SRR4302534.2621521/1‑94 (MQ=60) tcgagtagtcCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGC < SRR4302534.3429865/84‑1 (MQ=60) TCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGC < SRR4302534.5308583/94‑1 (MQ=60) TCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGC < SRR4302534.374685/94‑1 (MQ=60) TCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGC < SRR4302534.5489174/94‑1 (MQ=60) TCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGC < SRR4302534.4097449/94‑1 (MQ=60) CGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCG > SRR4302534.2898972/1‑94 (MQ=60) GGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCCGTGATTGCGGCCTTCAGGCGG > SRR4302534.2587149/1‑94 (MQ=60) GGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGT > SRR4302534.4754788/1‑94 (MQ=60) GGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGT < SRR4302534.523244/94‑1 (MQ=60) GTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTG > SRR4302534.3777464/1‑94 (MQ=60) GTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTG > SRR4302534.196462/1‑94 (MQ=60) TGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGG < SRR4302534.6094239/94‑1 (MQ=60) TGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGG > SRR4302534.5918634/1‑94 (MQ=60) GAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGG < SRR4302534.3680910/94‑1 (MQ=60) TCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATT < SRR4302534.534524/94‑1 (MQ=60) CCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTT < SRR4302534.3121643/94‑1 (MQ=60) GCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGGACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTC > SRR4302534.2980467/1‑94 (MQ=60) CGGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCA > SRR4302534.814169/1‑94 (MQ=60) GGGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAA > SRR4302534.1068555/1‑94 (MQ=60) GGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAA > SRR4302534.4980826/1‑94 (MQ=60) GGACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAA > SRR4302534.41038/1‑94 (MQ=60) ACTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGA > SRR4302534.1572212/1‑94 (MQ=60) CTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGCACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAA > SRR4302534.2188899/1‑94 (MQ=60) CTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAA > SRR4302534.6425661/1‑94 (MQ=60) CTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAA < SRR4302534.4557590/94‑1 (MQ=60) CTCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAA > SRR4302534.4251064/1‑94 (MQ=60) TCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAG > SRR4302534.618891/1‑94 (MQ=60) TCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAG < SRR4302534.3847369/94‑1 (MQ=60) TCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAG < SRR4302534.1467639/94‑1 (MQ=60) TCGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAG < SRR4302534.3024075/94‑1 (MQ=60) CGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCGCGCCAGCGGGGAGCATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGA < SRR4302534.983806/94‑1 (MQ=60) CGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGA > SRR4302534.5614904/1‑94 (MQ=60) CGGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGA > SRR4302534.6265653/1‑94 (MQ=60) GGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAGCATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGAC > SRR4302534.4465710/1‑94 (MQ=60) GGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGAC < SRR4302534.2648183/94‑1 (MQ=60) CGGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGAC < SRR4302534.4137577/94‑1 (MQ=60) GGCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACC < SRR4302534.1653465/94‑1 (MQ=60) GCATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCG < SRR4302534.3022368/94‑1 (MQ=60) CATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGC > SRR4302534.825666/1‑94 (MQ=60) ATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCC > SRR4302534.3220594/1‑94 (MQ=60) ATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCC > SRR4302534.5499489/1‑94 (MQ=60) ATCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCC > SRR4302534.3904420/1‑94 (MQ=60) TCTTTTAGCCGACTGCG‑TAGCGCTTCACGCCAGGGGTGAACATTATCAGTGATTGCCGCCTTCAGCCGTGTGAATTTTTCAAAGAAGACCGCCA < SRR4302534.1854666/94‑1 (MQ=57) TCTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCA < SRR4302534.5864552/94‑1 (MQ=60) CTTTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAG < SRR4302534.3708176/94‑1 (MQ=60) TTCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCT < SRR4302534.6231700/94‑1 (MQ=60) TCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTG < SRR4302534.203561/94‑1 (MQ=60) TCAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTG > SRR4302534.4818735/1‑94 (MQ=60) CAGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGC < SRR4302534.3973110/94‑1 (MQ=60) AGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCG > SRR4302534.2876672/1‑94 (MQ=60) AGCCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCG > SRR4302534.5182637/1‑94 (MQ=60) CCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGT < SRR4302534.3615895/94‑1 (MQ=60) CCGACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGT < SRR4302534.717779/94‑1 (MQ=60) GACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTTGGAATTTTTCAAAGAAGACCGGCAGCTGCGGTGG > SRR4302534.4560218/1‑94 (MQ=60) GACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGA > SRR4302534.589845/1‑94 (MQ=60) GACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGA > SRR4302534.537159/1‑94 (MQ=60) ACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAG < SRR4302534.6529003/94‑1 (MQ=60) ACTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAG > SRR4302534.5247196/1‑94 (MQ=60) CTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAGG > SRR4302534.1727507/1‑94 (MQ=60) CTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAGG > SRR4302534.185329/1‑94 (MQ=60) CTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAGG < SRR4302534.625866/94‑1 (MQ=60) CTGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAGG > SRR4302534.5104874/1‑94 (MQ=60) TGCG‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAGGC > SRR4302534.4480249/1‑94 (MQ=60) G‑CAGCGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAGGCCAG > SRR4302534.1264738/1‑94 (MQ=60) G‑CGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAGGCCAGCAG < SRR4302534.5173241/94‑1 (MQ=60) | AACTGTGGCGTGGAGAGGAGCTGGCTTTGCTGATAGCACATCACCTCTTCGGTGAGTTCCGGCGGGACTCGGGCATCTTTCAGCCGACTGCG‑CA‑CGCTTCACGCCAGCGGGGAACATCATCAGTGATTGCCGCCTTCAGGCGTGGGAATTTTTCAAAGAAGACCGCCAGCTGCGGTGAGGCCAGCAG > NC_000913/3926969‑3927155 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |