Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,930,568 |
+G |
intergenic (+66/‑373) |
kup → / → rbsD |
low affinity potassium transport system/RbsD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,930,567 | 1 | . | G | 99.6%
| 768.2
/ ‑3.9
| 225 | intergenic (+65/‑374) | kup/rbsD | low affinity potassium transport system/RbsD |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base G (104/120); total (105/120) |
| Fisher's exact test for biased strand distribution p-value = 4.67e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 |
Only 100 of 260 total aligned reads displayed.
GCACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TT‑GCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTAT > NC_000913/3930475‑3930654
|
gcACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑tt < 1:1344209/93‑1 (MQ=255)
gcACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑tt < 2:789952/93‑1 (MQ=255)
gcACAGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑tt < 1:2766866/93‑1 (MQ=255)
cACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TT‑g < 2:3827595/93‑1 (MQ=255)
cACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TT‑g < 1:4206987/93‑1 (MQ=255)
aCCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TT‑gg < 2:6278824/93‑2 (MQ=255)
cGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TT‑ggcg > 1:5904786/1‑90 (MQ=255)
gAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACGGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TT‑ggcga > 1:293734/1‑89 (MQ=255)
gAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TT‑ggcga < 2:1309441/93‑5 (MQ=255)
gAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TT‑ggcga < 2:4938078/93‑5 (MQ=255)
gAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TT‑ggcga < 1:5039488/93‑5 (MQ=255)
gAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TT‑ggcga < 2:903347/93‑5 (MQ=255)
gAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCACCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TT‑ggcga > 1:5851349/1‑89 (MQ=255)
aGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCgaga > 2:4912556/1‑93 (MQ=255)
aGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCgaga > 2:4033587/1‑93 (MQ=255)
gACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGaa > 2:4686873/1‑93 (MQ=255)
aCGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGaaa > 1:6407367/1‑93 (MQ=255)
aCGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGaaa < 1:4979746/93‑1 (MQ=255)
aCGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGaaa < 2:1602469/93‑1 (MQ=255)
aCGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGaaa > 2:3767956/1‑93 (MQ=255)
aCGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGaaa < 2:4280778/93‑1 (MQ=255)
aCGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAAAAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGaaa > 2:4505298/1‑93 (MQ=255)
gCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACg < 2:3933651/93‑1 (MQ=255)
gCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACg < 2:5631791/93‑1 (MQ=255)
gCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACg > 1:1136501/1‑93 (MQ=255)
cTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGc < 1:484482/93‑1 (MQ=255)
cTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGc < 1:5130296/93‑1 (MQ=255)
tCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGcc < 2:2361187/93‑1 (MQ=255)
tCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGcc < 2:6178883/93‑1 (MQ=255)
ccATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCa > 2:5580733/1‑93 (MQ=255)
cATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCaa < 2:2784105/93‑1 (MQ=255)
cATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCaa < 1:3926301/93‑1 (MQ=255)
cATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCaa > 1:2085408/1‑93 (MQ=255)
atatGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCaaa < 1:5765907/93‑1 (MQ=255)
atatGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCaaa > 2:1120384/1‑93 (MQ=255)
atGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACg > 1:688227/1‑93 (MQ=255)
tGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGt > 2:5525541/1‑93 (MQ=255)
gTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTa > 2:5795738/1‑93 (MQ=255)
cATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTagaa < 2:2637452/93‑1 (MQ=255)
aTAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTagaag > 2:6147774/1‑93 (MQ=255)
aaCGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAgaagaa < 1:3507979/93‑1 (MQ=255)
aCGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGaagaag > 2:1838415/1‑93 (MQ=255)
tacgtcGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGCGGTGGCAAGTTATGG‑TTGGGGAGAAACGCCAAACGTAGAAGAAGttt > 1:5349449/3‑93 (MQ=255)
cgtcGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTc < 2:3992636/93‑1 (MQ=255)
gtcGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTcc > 1:4739154/1‑93 (MQ=255)
gtcGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTcc < 1:4333584/93‑1 (MQ=255)
gtcGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTcc > 1:4344104/1‑93 (MQ=255)
gggTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTTCAcc > 2:4601242/1‑93 (MQ=255)
gggTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCAcc < 1:342048/93‑1 (MQ=255)
gggTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCAcc < 2:3451484/93‑1 (MQ=255)
gggTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCAcc < 2:3144901/93‑1 (MQ=255)
ggTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCg > 2:5467607/1‑93 (MQ=255)
gTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGc < 1:5276071/93‑1 (MQ=255)
tACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCt > 2:138788/1‑93 (MQ=255)
tACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCt > 1:3690662/1‑93 (MQ=255)
tACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCt < 2:3579430/93‑1 (MQ=255)
aCAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTg > 2:2807769/1‑93 (MQ=255)
cAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGc > 1:5669133/1‑93 (MQ=255)
cAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGc < 1:4696191/93‑1 (MQ=255)
cAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGc < 1:76693/93‑1 (MQ=255)
gATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGCTG‑GCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCgg > 1:5506598/1‑93 (MQ=255)
ttGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTc < 2:4199741/93‑1 (MQ=255)
aacaacTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTgg > 2:1771476/1‑93 (MQ=255)
caacTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAACCGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGaa < 1:4167411/93‑1 (MQ=255)
caacTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGaa > 2:243016/1‑93 (MQ=255)
cTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGa < 1:3851917/93‑1 (MQ=255)
cGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTaa > 2:2886212/1‑93 (MQ=255)
cccACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGt < 1:2538366/93‑1 (MQ=255)
cccACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGt < 1:2601930/93‑1 (MQ=255)
cccACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGt < 1:3782662/93‑1 (MQ=255)
ccACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGtt < 2:2279749/93‑1 (MQ=255)
cACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGttt > 2:5903061/1‑92 (MQ=255)
cACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTg > 1:6002694/1‑93 (MQ=255)
aCTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGc > 1:2290165/1‑93 (MQ=255)
cTTTCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGATTTCCACCGCTGCGGTCTGGAAGGATTAAGTTAcc > 2:5584581/1‑93 (MQ=255)
cTTTCTGGCGCGTAGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGcc < 2:1748359/93‑1 (MQ=255)
tttCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCg < 2:1872409/93‑1 (MQ=255)
tCTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGga < 1:4017467/93‑1 (MQ=255)
cTGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGgat < 2:5942000/93‑1 (MQ=255)
tGGCGCGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGgatg < 2:5770950/93‑1 (MQ=255)
gcgcGTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGAGGTCTGGAAGGATTAAGTTGCCGgatgat > 2:1551296/1‑93 (MQ=255)
cgcgTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGatgatg < 1:3049912/93‑1 (MQ=255)
gcgTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATgg > 2:5143351/1‑93 (MQ=255)
gcgTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATgg > 2:3177417/1‑93 (MQ=255)
gcgTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGATCTGGAAGGATTAAGTTGCCGGATGATgg > 1:6352694/1‑93 (MQ=255)
cgTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGa < 1:863905/93‑1 (MQ=255)
cgTGGTGGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGa < 2:3033957/93‑1 (MQ=255)
gtggtgGCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGCCTGGAAGGATTAAGTTGCCGGATGATGGaa > 2:2734930/1‑93 (MQ=255)
ggtggCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAAc < 2:2004991/93‑1 (MQ=255)
gCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAAcctcc > 1:6175890/1‑93 (MQ=255)
gCAAGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAAcctcc > 1:169454/1‑93 (MQ=255)
aaGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCctt > 1:3216813/1‑93 (MQ=255)
aaGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCctt > 1:143490/1‑93 (MQ=255)
aaGTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCctt < 2:3216674/93‑1 (MQ=255)
gTTATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCcttct < 2:3287117/93‑1 (MQ=255)
ttATGG‑TTGGCGAGAAACGCCAACCGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCcttctt < 2:642656/93‑1 (MQ=255)
tATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCttt < 1:1046055/93‑1 (MQ=255)
tATGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCttt < 2:373959/93‑1 (MQ=255)
aTGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTa > 2:2528494/1‑93 (MQ=255)
tGG‑TTGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTAt < 1:4619272/93‑1 (MQ=255)
|
GCACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGG‑TT‑GCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTAT > NC_000913/3930475‑3930654
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TT‑G‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCAT > NC_000913/3930475‑3930661
|
GCACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TT‑G < SRR4302534.2811528/94‑1 (MQ=60)
GCACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TT‑G < SRR4302534.1379652/94‑1 (MQ=60)
GCACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TT‑G < SRR4302534.3022142/94‑1 (MQ=60)
GCACAGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TT‑G < SRR4302534.2839696/94‑1 (MQ=60)
CACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TT‑G‑G < SRR4302534.5384779/94‑1 (MQ=60)
CACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TT‑G‑G < SRR4302534.4657580/94‑1 (MQ=60)
CACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TT‑G‑G < SRR4302534.4320530/94‑1 (MQ=60)
ACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TT‑Ggc > SRR4302534.415712/1‑92 (MQ=60)
ACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TT‑Ggc < SRR4302534.2841476/94‑3 (MQ=60)
CCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TT‑Ggcg > SRR4302534.6065126/1‑91 (MQ=60)
CGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACGGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGA > SRR4302534.301330/1‑94 (MQ=60)
CGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGA > SRR4302534.3243604/1‑94 (MQ=60)
CGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGA > SRR4302534.3634408/1‑94 (MQ=60)
CGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGA < SRR4302534.3689508/94‑1 (MQ=60)
CGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGA > SRR4302534.6030250/1‑94 (MQ=60)
CGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCACCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGA > SRR4302534.6010229/1‑94 (MQ=60)
GAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAG < SRR4302534.3585927/94‑1 (MQ=60)
GAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAG > SRR4302534.2358966/1‑94 (MQ=60)
GAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAG > SRR4302534.5429583/1‑94 (MQ=60)
GAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAG > SRR4302534.2826828/1‑94 (MQ=60)
GAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAG < SRR4302534.5175596/94‑1 (MQ=60)
AAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGA < SRR4302534.2253521/94‑1 (MQ=60)
AGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGGTTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCCAGTTAT‑GG‑TT‑Ggcggcga > SRR4302534.1407324/1‑87 (MQ=60)
AGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAA > SRR4302534.524675/1‑94 (MQ=60)
AGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAA < SRR4302534.5891272/94‑1 (MQ=60)
GACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAA > SRR4302534.6580302/1‑94 (MQ=60)
ACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAAC < SRR4302534.5114529/94‑1 (MQ=60)
CGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACG > SRR4302534.1166212/1‑94 (MQ=60)
CGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACG < SRR4302534.1120897/94‑1 (MQ=60)
GCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGC > SRR4302534.4880798/1‑94 (MQ=60)
CTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCC < SRR4302534.5268804/94‑1 (MQ=60)
CTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCC < SRR4302534.496616/94‑1 (MQ=60)
TCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCA > SRR4302534.2208019/1‑94 (MQ=60)
CCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAA > SRR4302534.2140057/1‑94 (MQ=60)
CCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAA < SRR4302534.6053970/94‑1 (MQ=60)
CCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGGTGT‑GG‑TTGG‑CGAGAAACGCCAA > SRR4302534.2686555/1‑94 (MQ=60)
CATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAA < SRR4302534.4031485/94‑1 (MQ=60)
CATATGGCAATAACGTACGTCGGGTACAGATTGAACAACTGTCGTCCACGCTCTTGCGCGTGGTGGGAAGTTAT‑GG‑TT‑Ggcgagaaccacaaat > SRR4302534.3281371/1‑79 (MQ=39)
ATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAAC < SRR4302534.5922330/94‑1 (MQ=60)
TATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACG > SRR4302534.705050/1‑94 (MQ=60)
ATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGT > SRR4302534.4313158/1‑94 (MQ=60)
CCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAA > SRR4302534.2997735/1‑94 (MQ=60)
CCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAA < SRR4302534.5477784/94‑1 (MQ=60)
CCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGGGGCAAGGTATGGG‑TT‑G‑GGAGAAACGCCAAACGTAGAA > SRR4302534.4917774/1‑94 (MQ=60)
TAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAA < SRR4302534.4910060/94‑1 (MQ=60)
TAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAA > SRR4302534.4230448/1‑94 (MQ=60)
AACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAG < SRR4302534.4747128/94‑1 (MQ=60)
AACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAG < SRR4302534.3602351/94‑1 (MQ=60)
AACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAG > SRR4302534.3915542/1‑94 (MQ=60)
CGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTT < SRR4302534.6458395/94‑1 (MQ=60)
CGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTT < SRR4302534.3486527/94‑1 (MQ=60)
GTCCGGCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTT < SRR4302534.5974454/94‑1 (MQ=60)
GTACGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGCGGTGGCAAGTTAT‑GG‑TTGG‑GGAGAAACGCCAAACGTAGAAGAAGTTT > SRR4302534.5493683/1‑94 (MQ=60)
CGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCC < SRR4302534.5478492/94‑1 (MQ=60)
CGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCC > SRR4302534.4461442/1‑94 (MQ=60)
CGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCC > SRR4302534.5267318/1‑94 (MQ=60)
CGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCC > SRR4302534.4867815/1‑94 (MQ=60)
GTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCA < SRR4302534.4450747/94‑1 (MQ=60)
GGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCG < SRR4302534.350801/94‑1 (MQ=60)
GGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGC > SRR4302534.5602980/1‑94 (MQ=60)
GTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCT < SRR4302534.5418542/94‑1 (MQ=60)
GTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCT > SRR4302534.3789898/1‑94 (MQ=60)
ACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGC < SRR4302534.1879752/94‑1 (MQ=60)
ACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGC > SRR4302534.5822620/1‑94 (MQ=60)
CAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCG < SRR4302534.78774/94‑1 (MQ=60)
CAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCG < SRR4302534.4823657/94‑1 (MQ=60)
CAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCG < SRR4302534.6552720/94‑1 (MQ=60)
CAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCG > SRR4302534.3234710/1‑94 (MQ=60)
AGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GGCTG‑G‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGG > SRR4302534.5655118/1‑94 (MQ=60)
AGATTGAACAACTGTCGCCCACTTCCTGGCGCGTGGGGGCAAGTTAT‑GG‑CT‑GCCGAGTAAAGCCAAACGTAGAAGAAGTTTTTCACCGCTGCGG > SRR4302534.3791142/1‑94 (MQ=60)
TTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCT < SRR4302534.4679621/94‑1 (MQ=60)
TGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTG < SRR4302534.2529141/94‑1 (MQ=60)
TGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTG < SRR4302534.409207/94‑1 (MQ=60)
GAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGG > SRR4302534.6142828/1‑94 (MQ=60)
ACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAA < SRR4302534.1306518/94‑1 (MQ=60)
CACCTGTCGCCCATTTTCTGGCGCGTGGTGGCAAGTTAT‑GT‑TTGG‑CAAGAACCGCCAAACGTAAAAGAAGTTTTCCCCCGCTGCGGTCTGGAAG < SRR4302534.4331185/94‑1 (MQ=60)
CAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAACCGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAG < SRR4302534.4279975/94‑1 (MQ=60)
CAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAG > SRR4302534.5737899/1‑94 (MQ=60)
AACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGG < SRR4302534.980239/94‑1 (MQ=60)
CTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGAT < SRR4302534.4413921/94‑1 (MQ=60)
CTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGAT < SRR4302534.3955348/94‑1 (MQ=60)
TGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATT > SRR4302534.863293/1‑94 (MQ=60)
GCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGT > SRR4302534.4804275/1‑94 (MQ=60)
GCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGT > SRR4302534.1462812/1‑94 (MQ=60)
GCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGT > SRR4302534.5847597/1‑94 (MQ=60)
CCCACTTTCTTTCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTT > SRR4302534.5146158/1‑94 (MQ=60)
CCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTT < SRR4302534.2670758/94‑1 (MQ=60)
CCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTT > SRR4302534.787567/1‑94 (MQ=60)
CCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTT < SRR4302534.2605713/94‑1 (MQ=60)
CCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTT < SRR4302534.3884223/94‑1 (MQ=60)
CCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTG > SRR4302534.3979869/1‑94 (MQ=60)
CCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTG > SRR4302534.6165763/1‑94 (MQ=60)
CACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGC > SRR4302534.6601877/1‑94 (MQ=60)
CACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGC > SRR4302534.2350957/1‑94 (MQ=60)
CACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGC > SRR4302534.1200765/1‑94 (MQ=60)
CACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGC > SRR4302534.5140229/1‑94 (MQ=60)
ACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCC < SRR4302534.4850667/94‑1 (MQ=60)
CTTTCTGGCTCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCG > SRR4302534.6471201/1‑94 (MQ=60)
CTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCG < SRR4302534.2640897/94‑1 (MQ=60)
CTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGCTTTCCACCGCTGCTGTCTGGTAGGATTAAGGTGCCG > SRR4302534.3937351/1‑94 (MQ=60)
TCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGAT < SRR4302534.4125166/94‑1 (MQ=60)
TCTGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGAT < SRR4302534.6192403/94‑1 (MQ=60)
TGGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGA < SRR4302534.721624/94‑1 (MQ=60)
GGCGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGAT > SRR4302534.5675192/1‑94 (MQ=60)
CGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGG < SRR4302534.3129925/94‑1 (MQ=60)
CGCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGATCTGGAAGGATTAAGTTGCCGGATGATGG > SRR4302534.6524253/1‑94 (MQ=60)
GCGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGA > SRR4302534.1598437/1‑94 (MQ=60)
CGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAA < SRR4302534.885725/94‑1 (MQ=60)
CGTGGTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGATGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAA > SRR4302534.6633480/1‑94 (MQ=60)
GTGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCT < SRR4302534.3872616/94‑1 (MQ=60)
TGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTC < SRR4302534.6228535/94‑1 (MQ=60)
TGGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTC > SRR4302534.1249843/1‑94 (MQ=60)
GGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCC > SRR4302534.173926/1‑94 (MQ=60)
GGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCC > SRR4302534.6343946/1‑94 (MQ=60)
GGCAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTAGCCGGATGATGGAAACCTCC > SRR4302534.5059503/1‑94 (MQ=60)
CAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTT > SRR4302534.3302195/1‑94 (MQ=60)
CAAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTT > SRR4302534.147246/1‑94 (MQ=60)
AAGTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTC > SRR4302534.4446559/1‑94 (MQ=60)
GTTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTT > SRR4302534.407637/1‑94 (MQ=60)
ATTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTT < SRR4302534.4457350/94‑1 (MQ=60)
TTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTT < SRR4302534.1734252/94‑1 (MQ=60)
TTAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTT < SRR4302534.3581554/94‑1 (MQ=60)
TAT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTA < SRR4302534.1073092/94‑1 (MQ=60)
AT‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTAT < SRR4302534.2584963/94‑1 (MQ=60)
T‑GG‑TTGG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATG < SRR4302534.4744616/94‑1 (MQ=60)
G‑TTGG‑CGATAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTC < SRR4302534.4088700/94‑1 (MQ=60)
ttgG‑CGAGAAACGCCATACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCG < SRR4302534.303018/91‑1 (MQ=60)
ttgG‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCG < SRR4302534.4140081/91‑1 (MQ=60)
G‑G‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCA > SRR4302534.1060175/1‑94 (MQ=60)
G‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCAT < SRR4302534.2841474/94‑1 (MQ=60)
|
GCACCGAAGACGCTCCATATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTAT‑GG‑TT‑G‑CGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATGGAAACCTCCTTCTTTATGTCGCAT > NC_000913/3930475‑3930661
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
