Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,951,168	+G	coding (37/1818 nt)	ilvD →	dihydroxyacid dehydratase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,951,168	1	.	G	100.0%	345.8 / NA	103	P13A (CCC→GCC)	ilvD	dihydroxyacid dehydratase
Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (16/87); total (16/87)

Only 100 of 123 total aligned reads displayed.

GGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑G‑GC‑C‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCAC  >  NC_000913/3951087‑3951248

ggAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGaa                                                                          <  1:1255528/93‑1 (MQ=255)

ggAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGaa                                                                          <  2:6025244/93‑1 (MQ=255)

 gAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAAt                                                                         <  2:1550754/93‑1 (MQ=255)

 gAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAAt                                                                         <  2:6042007/93‑1 (MQ=255)

 gAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAAt                                                                         <  1:5409916/93‑1 (MQ=255)

  aGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATg                                                                        <  2:1668052/93‑1 (MQ=255)

  aGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATg                                                                        <  1:4743441/93‑1 (MQ=255)

    taaataaaGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGAc                                                                      <  1:6334628/93‑1 (MQ=255)

    taaataaaGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGAc                                                                      <  2:2749342/93‑1 (MQ=255)

        taaaGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGAc                                                                  <  2:1414922/93‑1 (MQ=255)

        taaaGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGAc                                                                  <  1:4630400/93‑1 (MQ=255)

          aaGTATGCCTAAGTCCCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGc                                                                <  1:712699/93‑1 (MQ=255)

          aaGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGc                                                                <  1:1089835/93‑1 (MQ=255)

            gTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCg                                                              <  2:4872397/93‑1 (MQ=255)

            gTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCg                                                              <  1:1184642/93‑1 (MQ=255)

             tATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑a                                                            <  2:231783/93‑1 (MQ=255)

             tATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑a                                                            <  1:1815652/93‑1 (MQ=255)

              aTGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑At                                                           <  1:6053930/93‑1 (MQ=255)

               tGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑Att                                                          <  2:1967951/93‑1 (MQ=255)

               tGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑Att                                                          <  1:2663149/93‑1 (MQ=255)

                gCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑Attt                                                         <  1:2929587/93‑1 (MQ=255)

                gCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑Attt                                                         <  2:2845396/93‑1 (MQ=255)

                 ccTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTc                                                        <  2:4022053/93‑1 (MQ=255)

                   tAAGTACCGTTCCGCCACCACCACTCATTGTCGTAATATGGCGGGGGCTCGT‑‑‑GC‑‑GC‑‑CGTGG‑‑G‑GCGC‑‑CACCCGGATGAACGACGCCG‑Ctttttg                                                      >  2:5707331/1‑90 (MQ=255)

                    aaGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGGTCGT‑‑‑GC‑‑GCCGTGG‑G‑‑G‑GG‑G‑‑CCCCCGAATGACCGACGCCG‑AATTCGGt                                                     >  1:1387780/1‑93 (MQ=255)

                    aaGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGGTCGT‑‑‑GC‑‑GC‑‑TGT‑GGCG‑GG‑G‑‑CACCCGCATGACCGACGCCG‑ATTTTGGt                                                     >  1:3605316/1‑93 (MQ=255)

                     aGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGG‑‑CCCCCGGATGACCGACGCCG‑ACTTCTGTa                                                    >  1:1515528/1‑93 (MQ=255)

                      gTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTaa                                                   <  2:3238794/93‑1 (MQ=255)

                      gTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGGTCGT‑‑‑GG‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGGATGAACGACGCCG‑ACTTCCGtta                                                   >  1:2329895/1‑91 (MQ=255)

                      gTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGGTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CCCCCGGATGACCGAACCCG‑ATTTTGGtta                                                   >  1:3318857/1‑91 (MQ=255)

                        aCCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGc                                                 <  2:288984/93‑1 (MQ=255)

                        aCCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGGTTGT‑‑‑GCGGGG‑‑TGG‑G‑‑G‑GG‑C‑‑CCCCGGGGTGACCGACGCCGAATTTGGGTAAg                                                  >  1:3563835/1‑93 (MQ=255)

                         ccGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGcc                                                <  1:4186613/93‑1 (MQ=255)

                         ccGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGcc                                                <  2:5496606/93‑1 (MQ=255)

                         ccGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGGTCGT‑‑‑GC‑‑GC‑‑CGT‑G‑‑GCGCGC‑‑CCCCCGGATGACCGACCCCC‑ATTTTGGTGAgac                                                >  2:3857842/1‑91 (MQ=255)

                           gTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCCCTT‑‑‑GC‑‑GC‑‑CGT‑G‑‑GCGCGC‑‑CACCGGCATGAACGACCCCG‑CTTTCGGGAAGGCgg                                              >  2:3006512/1‑92 (MQ=255)

                           gTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGGTCGT‑‑‑GG‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCCGGATGAACGACGCCC‑GGTTCGGGAAGCCGa                                              >  1:2399430/1‑93 (MQ=255)

                            ttCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGAt                                             <  2:5390373/93‑1 (MQ=255)

                            ttCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGAt                                             <  2:1670740/93‑1 (MQ=255)

                            ttCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGCTCGTGGGGC‑‑GT‑‑GGC‑G‑‑G‑GC‑C‑‑CCCCGGAGTGA‑CGACGCCG‑ATTTCTGTAGGCCggt                                             >  1:3015892/1‑91 (MQ=255)

                            ttCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGCTCCT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGCATGACCGACCCCC‑CATTTGGTAAGGCgct                                             >  2:3637862/1‑91 (MQ=255)

                              ccGCCACCACCACTCATGGTCGTAATATGGCGGGGGCTCCT‑‑‑GC‑‑GC‑‑CGTGG‑‑G‑GCGC‑‑CCCCCGAATGACCCACCCCC‑CATTCGGTAAGCCCAtat                                           >  1:1769730/1‑91 (MQ=255)

                               cGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTAt                                          <  1:676176/93‑1 (MQ=255)

                               cGCCACCACCACTCATGGACGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTAt                                          <  1:867267/93‑1 (MQ=255)

                                 ccaccaccaCTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑GACCGGAATTACCGACGCCG‑ATTTCGGTAAGCCGATTATcg                                        <  2:743009/93‑1 (MQ=255)

                                   cccaccacTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATcgcg                                      <  2:4792723/92‑1 (MQ=255)

                                   accaccacTCATGGTCGTAATATGGCGGGGGGTCGT‑‑‑GG‑‑GC‑‑TGT‑G‑‑G‑GG‑CGGCACCCGGATGACCGACGCCG‑ATTTCGGTAAGCCGATTATtgcg                                      >  2:1543029/1‑93 (MQ=255)

                                   accaccacTCATGGTCGTAATATGGCGGGGGCTCGT‑‑‑GC‑‑GC‑‑CGTGG‑‑G‑GCGC‑‑CACCCGGATGAACGACGCCG‑CTTTCGGTGAGCAGACTATcgcg                                      >  2:340427/1‑93 (MQ=255)

                                   accaccacTCATGGTCGTAATATGGCGGGGGCTCCT‑‑‑GG‑‑GC‑‑TGTGG‑‑G‑GCGC‑‑CACCCGGATGAACGACGCCG‑CTTTCGGGTAGCCGATTAttccg                                      >  2:2088079/1‑89 (MQ=255)

                                    ccaccacTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCgg                                     <  1:353489/93‑1 (MQ=255)

                                     caccacTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGt                                    <  1:1860431/93‑1 (MQ=255)

                                       ccacTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTtg                                  <  1:2644877/93‑1 (MQ=255)

                                       ccacTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTtg                                  <  2:711626/93‑1 (MQ=255)

                                        cacTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTtgt                                 <  1:3992105/93‑1 (MQ=255)

                                        cacTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTtgt                                 <  2:5384111/93‑1 (MQ=255)

                                        cacTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTtgt                                 <  2:5668471/93‑1 (MQ=255)

                                            cATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAAc                             <  1:1043111/93‑1 (MQ=255)

                                             aTGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACt                            <  2:1410519/93‑1 (MQ=255)

                                             aTGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACt                            <  2:5351175/93‑1 (MQ=255)

                                              tGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTc                           <  1:3036578/93‑1 (MQ=255)

                                              tGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTc                           <  1:4113481/93‑1 (MQ=255)

                                              tGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTc                           <  2:3162413/93‑1 (MQ=255)

                                                gTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGt                         <  1:4414892/93‑1 (MQ=255)

                                                 tCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGtt                        <  2:6294079/93‑1 (MQ=255)

                                                 tCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGtt                        <  1:4980138/93‑1 (MQ=255)

                                                  cGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTc                       <  2:2052666/93‑1 (MQ=255)

                                                     aaTATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCAcc                    <  1:2886375/93‑1 (MQ=255)

                                                      atatGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCAccc                   <  2:1505665/93‑1 (MQ=255)

                                                        atGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCaa                 <  2:1132874/93‑1 (MQ=255)

                                                         tGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAAt                <  1:1664486/93‑1 (MQ=255)

                                                          ggCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAAtt               >  1:1021360/1‑93 (MQ=255)

                                                          ggCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAAtt               >  1:3686882/1‑93 (MQ=255)

                                                           gCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTTACCCAAttt              <  2:1674528/93‑1 (MQ=255)

                                                           gCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAAttt              <  2:2296746/93‑1 (MQ=255)

                                                            cGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CAGCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTg             <  1:1913359/93‑1 (MQ=255)

                                                             gggTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGt            >  1:4605601/1‑93 (MQ=255)

                                                              ggTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTa           >  2:6171707/1‑93 (MQ=255)

                                                              ggTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTa           <  2:3621542/93‑1 (MQ=255)

                                                              ggTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTa           <  1:3744201/93‑1 (MQ=255)

                                                              ggTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTa           <  2:4160327/93‑1 (MQ=255)

                                                               gTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTAc          <  1:5655916/93‑1 (MQ=255)

                                                               gTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTAc          >  1:1286109/1‑93 (MQ=255)

                                                               gTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTAc          >  1:1088997/1‑93 (MQ=255)

                                                               gTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTAc          <  1:396823/93‑1 (MQ=255)

                                                                tccTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTAcc         <  1:3431429/91‑1 (MQ=255)

                                                                tGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTAcc         <  2:1737935/93‑1 (MQ=255)

                                                                   tCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCggg      >  2:724041/1‑93 (MQ=255)

                                                                    cGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCgggc     >  1:3661659/1‑92 (MQ=255)

                                                                    cGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGt     >  2:2881010/1‑93 (MQ=255)

                                                                    cGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGt     >  2:1376316/1‑93 (MQ=255)

                                                                    cGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGt     <  1:2453620/93‑1 (MQ=255)

                                                                    cGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGt     <  2:6154759/93‑1 (MQ=255)

                                                                    cGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGt     >  1:4387141/1‑93 (MQ=255)

                                                                     gT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTc    >  2:432093/1‑93 (MQ=255)

                                                                     gT‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTc    >  2:312867/1‑93 (MQ=255)

                                                                      t‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCa   >  2:3028417/1‑93 (MQ=255)

                                                                      t‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCa   >  2:6447075/1‑93 (MQ=255)

                                                                      t‑‑‑GC‑‑GC‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCa   <  2:5981620/93‑1 (MQ=255)

                                                                          gc‑‑gc‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCAc  <  1:4269551/93‑1 (MQ=255)

                                                                          gc‑‑gc‑‑TGT‑G‑‑GCGCGC‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCAc  <  2:1605741/93‑1 (MQ=255)

GGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGT‑‑‑GC‑‑GC‑‑TGT‑G‑‑G‑GC‑C‑‑CACCGGAATGACCGACGCCG‑ATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCAC  >  NC_000913/3951087‑3951248

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑G‑‑‑G‑‑C‑C‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCACG  >  NC_000913/3951087‑3951249

GGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAAT                                                                         <  SRR4302534.1288613/94‑1 (MQ=60)

 GAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATG                                                                        <  SRR4302534.5555463/94‑1 (MQ=60)

  AGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGA                                                                       <  SRR4302534.4872204/94‑1 (MQ=60)

    TAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACC                                                                     <  SRR4302534.6505750/94‑1 (MQ=60)

        TAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACG                                                                 <  SRR4302534.4756054/94‑1 (MQ=60)

          AAGTATGCCTAAGTCCCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCC                                                               <  SRR4302534.730221/94‑1 (MQ=60)

          AAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCC                                                               <  SRR4302534.1118190/94‑1 (MQ=60)

            GTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGA                                                             <  SRR4302534.1215775/94‑1 (MQ=60)

             TATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGAT                                                            <  SRR4302534.1862832/94‑1 (MQ=60)

              ATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATT                                                           <  SRR4302534.6218557/94‑1 (MQ=60)

               TGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTT                                                          <  SRR4302534.2733550/94‑1 (MQ=60)

                GCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTC                                                         <  SRR4302534.3006507/94‑1 (MQ=60)

                   TAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGGTCGTGCGCTGT‑‑‑‑GGC‑‑G‑‑‑G‑‑G‑G‑‑CACCCGCATGACCGACGCCGATTTTGGT                                                      >  SRR4302534.3702263/1‑94 (MQ=57)

                   TAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGGTCGTGCGCCGTGGGGG‑‑‑‑G‑‑‑G‑‑C‑C‑‑‑‑CCCGAATGACCGACGCCGAATTCGGT                                                      >  SRR4302534.1424304/1‑94 (MQ=48)

                    AAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGCTCGTGCGCTGT‑‑‑‑GGCGCG‑‑‑G‑‑C‑C‑‑C‑CCGG‑ATGACCGACGCCGACTTCTGTA                                                     >  SRR4302534.1555350/1‑94 (MQ=60)

                      GTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAG                                                   <  SRR4302534.3114162/94‑1 (MQ=60)

                         CCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCG                                                <  SRR4302534.4299755/94‑1 (MQ=60)

                              CCGCCACCACCACTCATGGTCGTAATATGGCGGGGGGTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCCGGATGACCGACGCCCATTTCGGgaaacccctttt                                           >  SRR4302534.4389205/1‑82 (MQ=40)

                               CGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATC                                          <  SRR4302534.692673/94‑1 (MQ=60)

                               CGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCCGT‑‑‑‑G‑‑‑‑GGGCG‑‑C‑C‑‑C‑CCCGCATGACCGACGCCGATTTTGGTAAAGCGATTATC                                          >  SRR4302534.1841085/1‑94 (MQ=44)

                               CGCCACCACCACTCATGGACGTAATATGGCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATC                                          <  SRR4302534.889163/94‑1 (MQ=60)

                                  CACCACCACTCATGGTCGTAATATGGCGGGTGGTCGTGCGGTGT‑‑‑‑G‑‑‑‑G‑‑‑G‑‑G‑CGGCACCGGAATGACCGACGGCGATTTTCGTAAGCCGATTCTAGCG                                       >  SRR4302534.731447/1‑94 (MQ=50)

                                  CACCACCACTCATGGTCGTAATATGGCGGGTGCTCGGGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCCGGATGACCGCAGCCGATTTCGGTAAGACGCTTATCTCG                                       >  SRR4302534.3160597/1‑94 (MQ=36)

                                    CCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGT                                     <  SRR4302534.362533/94‑1 (MQ=60)

                                     CACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTT                                    <  SRR4302534.6107933/94‑1 (MQ=60)

                                     CACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTT                                    <  SRR4302534.1908853/94‑1 (MQ=60)

                                       CCTCTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGT                                  <  SRR4302534.2292062/94‑1 (MQ=60)

                                       CCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGT                                  <  SRR4302534.2714811/94‑1 (MQ=60)

                                        CACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTG                                 <  SRR4302534.4098969/94‑1 (MQ=60)

                                        CACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑G‑‑‑GGCG‑C‑‑CACCCGGATGACCAACACCGATTTCTGTAAGGCGATTATCGCGGGTGTG                                 >  SRR4302534.1571841/1‑94 (MQ=42)

                                         ACTCATGGTCGTAATATGGCGGGGGCTCGTGGGCTGT‑‑‑‑G‑‑‑‑GCGCG‑‑C‑C‑‑C‑CCGGGATGAACGCCACCGATTTCGGTAAGCACATTATTGCGGTTGTGA                                >  SRR4302534.787387/1‑94 (MQ=16)

                                            CATGGTCGTAATATGGCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACT                             <  SRR4302534.1070047/94‑1 (MQ=60)

                                              TGGTCGTAATATGGCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCG                           <  SRR4302534.168207/94‑1 (MQ=60)

                                              TGGTCGTAATATGGCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCG                           <  SRR4302534.4224136/94‑1 (MQ=60)

                                              TGGTCGTAATATGGCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCG                           <  SRR4302534.3116205/94‑1 (MQ=60)

                                               GGTCGTAATATGGCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGT                          <  SRR4302534.1257534/94‑1 (MQ=60)

                                                GTCGTAATATGGCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTT                         <  SRR4302534.4534063/94‑1 (MQ=60)

                                                 TCGTAATATGGCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTC                        <  SRR4302534.5114930/94‑1 (MQ=60)

                                                 TCGTAATATGGCGGGTGCTCCTGCGCTGT‑‑‑‑G‑‑‑‑G‑‑‑GGCG‑C‑‑CACCCGCATGACCCACCCCGACTTTGGTAAGCCGATTATCGCGGgtttgggatcgttc                        >  SRR4302534.368151/1‑80 (MQ=18)

                                                     AATATGGCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCC                    <  SRR4302534.2962130/94‑1 (MQ=60)

                                                       TATGGCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGGATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCCA                  >  SRR4302534.6427332/1‑94 (MQ=60)

                                                         TGGCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATT                >  SRR4302534.1047659/1‑94 (MQ=60)

                                                         TGGCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATT                <  SRR4302534.1707812/94‑1 (MQ=60)

                                                         TGGCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATT                >  SRR4302534.3786013/1‑94 (MQ=60)

                                                           GCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTG              >  SRR4302534.4372381/1‑94 (MQ=60)

                                                           GCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTG              <  SRR4302534.4840176/94‑1 (MQ=60)

                                                            CGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CAGCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGT             <  SRR4302534.1963299/94‑1 (MQ=60)

                                                            CGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGT             >  SRR4302534.4730579/1‑94 (MQ=60)

                                                              GGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTAC           >  SRR4302534.1117324/1‑94 (MQ=60)

                                                              GGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTAC           >  SRR4302534.1319978/1‑94 (MQ=60)

                                                              GGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTAC           <  SRR4302534.2714997/94‑1 (MQ=60)

                                                              GGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTAC           <  SRR4302534.3844794/94‑1 (MQ=60)

                                                               GTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACC          <  SRR4302534.5809026/94‑1 (MQ=60)

                                                               GTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACC          <  SRR4302534.4029046/94‑1 (MQ=60)

                                                               GTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACC          <  SRR4302534.406975/94‑1 (MQ=60)

                                                                TCCTCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCG         <  SRR4302534.3523623/94‑1 (MQ=60)

                                                                   TCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGT      >  SRR4302534.4505426/1‑94 (MQ=60)

                                                                   TCGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGC      >  SRR4302534.3760068/1‑94 (MQ=60)

                                                                    CGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTC     <  SRR4302534.2518822/94‑1 (MQ=60)

                                                                    CGTGCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTC     <  SRR4302534.369343/94‑1 (MQ=60)

                                                                       GCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCACG  <  SRR4302534.2103812/94‑1 (MQ=60)

                                                                       GCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCACG  <  SRR4302534.4384947/94‑1 (MQ=60)

                                                                       GCGCTGT‑‑‑‑G‑‑‑‑GC‑‑G‑‑CGC‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCACG  >  SRR4302534.336869/1‑94 (MQ=60)

GGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGT‑‑‑‑G‑‑‑‑G‑‑‑G‑‑C‑C‑‑CACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCACG  >  NC_000913/3951087‑3951249

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`