Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 884 257.2 12958910 96.9% 12557183 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,255,791 A→G A157A (GCA→GCG)  dinF → DNA‑damage‑inducible protein F

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,255,7910AG100.0% 713.4 / NA 208A157A (GCA→GCG) dinFDNA‑damage‑inducible protein F
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (108/100);  total (108/100)

Only 100 of 221 total aligned reads displayed.

GATTATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAA  >  NC_000913/4255701‑4255880
                                                                                          |                                                                                         
gATTATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGGGCTTTCTTGAAATCCGCTGGTTAAGCGCGcc                                                                                         >  2:5910811/1‑93 (MQ=255)
gATTATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGcc                                                                                         >  1:4802945/1‑93 (MQ=255)
gATTATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGcc                                                                                         >  1:3624919/1‑93 (MQ=255)
gATTATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGcc                                                                                         >  1:1739062/1‑93 (MQ=255)
  ttATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCgg                                                                                       >  1:1865845/1‑93 (MQ=255)
   tATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGc                                                                                      >  1:4524405/1‑93 (MQ=255)
   tATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGACGGc                                                                                      >  2:2999351/1‑93 (MQ=255)
    aTCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCg                                                                                     <  1:144509/93‑1 (MQ=255)
    aTCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAACCCGCCGGCg                                                                                     >  2:1593192/1‑93 (MQ=255)
     tCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGt                                                                                    <  2:35342/93‑1 (MQ=255)
      cGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTc                                                                                   <  1:720658/93‑1 (MQ=255)
        aTCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGc                                                                                 >  2:5932662/1‑93 (MQ=255)
         tCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCt                                                                                >  1:5874546/1‑93 (MQ=255)
          cTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAACCCGCTGGTTAAGCGCGCCGGCGTCGCTg                                                                               <  1:3287711/93‑1 (MQ=255)
           tGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTgg                                                                              <  2:294096/93‑1 (MQ=255)
           tGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTgg                                                                              <  2:553317/93‑1 (MQ=255)
            ggCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGc                                                                             <  2:5554676/93‑1 (MQ=255)
              cgcTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGa                                                                           <  2:2521960/93‑1 (MQ=255)
               gcTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGaa                                                                          >  1:5455681/1‑93 (MQ=255)
               gcTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGaa                                                                          <  2:6005869/93‑1 (MQ=255)
               gcTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGaa                                                                          <  1:4180359/93‑1 (MQ=255)
                cTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAAt                                                                         >  2:1409843/1‑93 (MQ=255)
                 tGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATc                                                                        >  2:2072680/1‑93 (MQ=255)
                 tGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATc                                                                        <  1:214390/93‑1 (MQ=255)
                  gCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCt                                                                       <  1:3468419/93‑1 (MQ=255)
                  gCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCt                                                                       >  1:5014225/1‑93 (MQ=255)
                   cATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTg                                                                      >  1:1686893/1‑93 (MQ=255)
                   cATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTg                                                                      <  2:5410971/93‑1 (MQ=255)
                    atatTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTgg                                                                     <  2:5167747/93‑1 (MQ=255)
                    atatTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTgg                                                                     >  2:4691313/1‑93 (MQ=255)
                    atatTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTgg                                                                     <  1:4625087/93‑1 (MQ=255)
                     tatTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTggc                                                                    >  1:3000515/1‑92 (MQ=255)
                     tatTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGt                                                                    >  1:3717305/1‑93 (MQ=255)
                      atTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTa                                                                   >  2:2349032/1‑93 (MQ=255)
                       ttgttgGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTAt                                                                  <  2:4948515/93‑1 (MQ=255)
                       ttgttgGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTAt                                                                  >  2:764246/1‑93 (MQ=255)
                        tgttgGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTAtt                                                                 <  1:1000649/93‑1 (MQ=255)
                        tgttgGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTAtt                                                                 <  1:6064903/93‑1 (MQ=255)
                         gttgGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTa                                                                >  2:2535433/1‑93 (MQ=255)
                          ttgGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTAc                                                               >  2:2302672/1‑93 (MQ=255)
                               ggTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCggt                                                          <  1:4420062/93‑1 (MQ=255)
                               ggTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCggt                                                          <  1:3859207/93‑1 (MQ=255)
                               ggTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCggt                                                          <  1:6008538/93‑1 (MQ=255)
                                gTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCggtt                                                         >  1:1500675/1‑93 (MQ=255)
                                 tAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCggttg                                                        <  1:2054005/93‑1 (MQ=255)
                                   gTGAGGCCGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCgggtggt                                                      >  1:6160310/1‑93 (MQ=255)
                                   gTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCggttggt                                                      <  2:625307/93‑1 (MQ=255)
                                    tGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCggttggtt                                                     <  1:1127121/93‑1 (MQ=255)
                                    tGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCggttggtt                                                     <  1:489727/93‑1 (MQ=255)
                                     gAGGCAGTCCTTGAACGGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCGGGCGAATCTGGTATTACTCGGTTGGTTa                                                    <  1:5615346/93‑1 (MQ=255)
                                       ggCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACt                                                  >  2:4444252/1‑93 (MQ=255)
                                       ggCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACt                                                  <  2:3682735/93‑1 (MQ=255)
                                         cAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCg                                                <  1:4078796/93‑1 (MQ=255)
                                           gTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGc                                              >  2:4829401/1‑93 (MQ=255)
                                           gTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGc                                              >  1:4600757/1‑93 (MQ=255)
                                            tCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCg                                             >  2:5591628/1‑93 (MQ=255)
                                            tCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCg                                             >  2:274445/1‑93 (MQ=255)
                                              cTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTg                                           >  2:3975117/1‑93 (MQ=255)
                                              cTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTg                                           >  1:472314/1‑93 (MQ=255)
                                               tGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGc                                          <  1:385132/93‑1 (MQ=255)
                                               tGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGGATTACTCGGTTGGTTACTCGGCGTGc                                          >  1:3356513/1‑93 (MQ=255)
                                                ggAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCa                                         >  2:3370136/1‑93 (MQ=255)
                                                ggAACAGCCGCCGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCa                                         <  1:3271044/93‑1 (MQ=255)
                                                  aaCAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAat                                       >  1:2883839/1‑93 (MQ=255)
                                                  aaCAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAat                                       <  1:3092592/93‑1 (MQ=255)
                                                   aCAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAata                                      >  2:3864083/1‑93 (MQ=255)
                                                    cAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAatat                                     <  2:6448250/93‑1 (MQ=255)
                                                     aGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATg                                    >  2:2923097/1‑93 (MQ=255)
                                                      ggcgcggcgcTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGc                                   <  2:1066734/93‑1 (MQ=255)
                                                      ggcgcggcgcTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGc                                   <  1:2712205/93‑1 (MQ=255)
                                                       gcgcggcgcTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGcc                                  <  2:3577829/93‑1 (MQ=255)
                                                        cgcggcgcTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGccc                                 <  2:1279722/93‑1 (MQ=255)
                                                          cggcgcTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGt                               <  2:2613188/93‑1 (MQ=255)
                                                           ggcgcTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTg                              >  2:2457614/1‑93 (MQ=255)
                                                            gcgcTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTgc                             <  2:1215782/93‑1 (MQ=255)
                                                             cgcTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTgcg                            >  2:5438714/1‑93 (MQ=255)
                                                              gcttgcttGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTgcgc                           >  1:3899648/1‑93 (MQ=255)
                                                              gcTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTgcgc                           >  2:1838608/1‑93 (MQ=255)
                                                              gcTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGGTACTCGGCGTGCAATATGCCCGTgcgc                           >  2:1651177/1‑93 (MQ=255)
                                                                tttCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCa                         >  2:5016761/1‑93 (MQ=255)
                                                                  tCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGt                       >  1:1618042/1‑93 (MQ=255)
                                                                  tCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGt                       <  1:1815977/93‑1 (MQ=255)
                                                                  tCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGt                       >  1:6328734/1‑93 (MQ=255)
                                                                  tCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGt                       >  1:900043/1‑93 (MQ=255)
                                                                        aaTCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAAtttt                 <  2:2756142/93‑1 (MQ=255)
                                                                        aaTCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAAtttt                 <  2:3017109/93‑1 (MQ=255)
                                                                         aTCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTg                >  2:480005/1‑93 (MQ=255)
                                                                          tCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGt               >  1:6240446/1‑93 (MQ=255)
                                                                          tCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGACCGTGCGCCAGTAATTTTGt               >  2:6153596/1‑93 (MQ=255)
                                                                            cGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGGGCAATATGCCCGTGCGCCAGTAATTTTGTTa             <  1:341254/93‑1 (MQ=255)
                                                                             gCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAg            <  2:4225425/93‑1 (MQ=255)
                                                                               tGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTg          <  2:1123073/93‑1 (MQ=255)
                                                                               tGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTg          >  2:15358/1‑93 (MQ=255)
                                                                               tGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTg          <  1:1310362/93‑1 (MQ=255)
                                                                                ggTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTgg         <  2:5768945/93‑1 (MQ=255)
                                                                                ggTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTgg         <  2:79420/93‑1 (MQ=255)
                                                                                ggTTAAGCCCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTgg         <  2:4079379/93‑1 (MQ=255)
                                                                                 gTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGt        <  1:5208399/93‑1 (MQ=255)
                                                                                  ttAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTc       <  2:1931114/93‑1 (MQ=255)
                                                                                      gcgcgcCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCa   >  1:2526444/1‑93 (MQ=255)
                                                                                          |                                                                                         
GATTATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAA  >  NC_000913/4255701‑4255880

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GCCGATTATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATC  >  NC_000913/4255698‑4255884
                                                                                             |                                                                                             
GCCGATTATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCG                                                                                               >  SRR4302534.1272676/1‑94 (MQ=60)
GCCGATTATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCG                                                                                               <  SRR4302534.4645148/94‑1 (MQ=60)
 CCGATTATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGC                                                                                              >  SRR4302534.680269/1‑94 (MQ=60)
  CGATTATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCC                                                                                             >  SRR4302534.3722373/1‑94 (MQ=60)
  CGATTATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCC                                                                                             >  SRR4302534.1784219/1‑94 (MQ=60)
  CGATTATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCC                                                                                             <  SRR4302534.743662/94‑1 (MQ=60)
  CGATTATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCC                                                                                             >  SRR4302534.4933357/1‑94 (MQ=60)
    ATTATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGG                                                                                           >  SRR4302534.1914411/1‑94 (MQ=60)
     TTATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGC                                                                                          >  SRR4302534.4646965/1‑94 (MQ=60)
     TTATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGC                                                                                          <  SRR4302534.4086381/94‑1 (MQ=60)
       ATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGT                                                                                        >  SRR4302534.2751534/1‑94 (MQ=60)
       ATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGT                                                                                        <  SRR4302534.148284/94‑1 (MQ=60)
        TCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTC                                                                                       <  SRR4302534.200777/94‑1 (MQ=60)
         CGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCG                                                                                      >  SRR4302534.4748860/1‑94 (MQ=60)
         CGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCG                                                                                      >  SRR4302534.3049178/1‑94 (MQ=60)
         CGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCG                                                                                      <  SRR4302534.738437/94‑1 (MQ=60)
          GATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGC                                                                                     >  SRR4302534.1193687/1‑94 (MQ=60)
           ATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTTAAATCCGCTGGTTAAGCGCGCCGGCGTCGCT                                                                                    >  SRR4302534.336263/1‑94 (MQ=60)
           ATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCT                                                                                    >  SRR4302534.6034043/1‑94 (MQ=60)
           ATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCT                                                                                    <  SRR4302534.4698196/94‑1 (MQ=60)
             CTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGG                                                                                  <  SRR4302534.5237181/94‑1 (MQ=60)
             CTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAACCCGCTGGTTAAGCGCGCCGGCGTCGCTGG                                                                                  <  SRR4302534.3375377/94‑1 (MQ=60)
              TGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGC                                                                                 >  SRR4302534.6256400/1‑94 (MQ=60)
              TGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGC                                                                                 >  SRR4302534.431165/1‑94 (MQ=60)
               GGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCG                                                                                <  SRR4302534.4266431/94‑1 (MQ=60)
                GCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTTAGCGCGGCGGCGTCGCTGGCGA                                                                               >  SRR4302534.3465756/1‑94 (MQ=60)
                 CGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAA                                                                              >  SRR4302534.5602697/1‑94 (MQ=60)
                 CGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAA                                                                              >  SRR4302534.1520129/1‑94 (MQ=60)
                  GCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAAT                                                                             <  SRR4302534.4293309/94‑1 (MQ=60)
                    TGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCT                                                                           <  SRR4302534.220011/94‑1 (MQ=60)
                    TGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCT                                                                           >  SRR4302534.5149737/1‑94 (MQ=60)
                     GCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTG                                                                          <  SRR4302534.1572600/94‑1 (MQ=60)
                     GCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTG                                                                          <  SRR4302534.3561638/94‑1 (MQ=60)
                     GCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTG                                                                          >  SRR4302534.1730757/1‑94 (MQ=60)
                       ATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGT                                                                        >  SRR4302534.3817243/1‑94 (MQ=60)
                       ATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGT                                                                        <  SRR4302534.4750585/94‑1 (MQ=60)
                       ATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGC                                                                        >  SRR4302534.3078993/1‑94 (MQ=60)
                        TATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTA                                                                       >  SRR4302534.379584/1‑94 (MQ=60)
                         ATTGTTGGCGGTAGTGAGGCAGTCCTGGACCAGGCGCGGCGCTTTGTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTAT                                                                      <  SRR4302534.4396178/94‑1 (MQ=60)
                           TGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTA                                                                    <  SRR4302534.1026292/94‑1 (MQ=60)
                           TGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTA                                                                    <  SRR4302534.6229799/94‑1 (MQ=60)
                             TTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACT                                                                  >  SRR4302534.6249371/1‑94 (MQ=60)
                              TGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTC                                                                 <  SRR4302534.5000445/94‑1 (MQ=60)
                              TGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTC                                                                 >  SRR4302534.490063/1‑94 (MQ=60)
                                GCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGG                                                               <  SRR4302534.4590057/94‑1 (MQ=60)
                                 CGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGGATTACTCGGT                                                              >  SRR4302534.3377045/1‑94 (MQ=60)
                                  GGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTT                                                             <  SRR4302534.6598251/94‑1 (MQ=60)
                                  GGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTT                                                             >  SRR4302534.1540172/1‑94 (MQ=60)
                                  GGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTT                                                             <  SRR4302534.4539397/94‑1 (MQ=60)
                                  GGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTT                                                             >  SRR4302534.3203582/1‑94 (MQ=60)
                                  GGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTT                                                             <  SRR4302534.3962829/94‑1 (MQ=60)
                                  GGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTT                                                             <  SRR4302534.6171787/94‑1 (MQ=60)
                                    TAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGGATCTGGTATTACTCGGTTGG                                                           >  SRR4302534.137327/1‑94 (MQ=60)
                                    TAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGG                                                           <  SRR4302534.1007040/94‑1 (MQ=60)
                                    TAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGG                                                           <  SRR4302534.2107676/94‑1 (MQ=60)
                                     AGTGAGGCCGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGGTGGT                                                          >  SRR4302534.6327865/1‑94 (MQ=60)
                                     AGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGT                                                          <  SRR4302534.4820748/94‑1 (MQ=60)
                                      GTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGCTGGTT                                                         >  SRR4302534.641987/1‑94 (MQ=60)
                                       TGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTA                                                        <  SRR4302534.501963/94‑1 (MQ=60)
                                       TGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTA                                                        <  SRR4302534.1156579/94‑1 (MQ=60)
                                        GAGGCAGTCCTTGAACGGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCGGGCGAATCTGGTATTACTCGGTTGGTTAC                                                       <  SRR4302534.5767280/94‑1 (MQ=60)
                                        GAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTAC                                                       >  SRR4302534.6338138/1‑94 (MQ=60)
                                          GGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTC                                                     >  SRR4302534.3474561/1‑94 (MQ=60)
                                          GGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTC                                                     <  SRR4302534.5068471/94‑1 (MQ=60)
                                           GCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCG                                                    <  SRR4302534.1765514/94‑1 (MQ=60)
                                            CAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGG                                                   <  SRR4302534.4188270/94‑1 (MQ=60)
                                             AGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGC                                                  >  SRR4302534.4725621/1‑94 (MQ=60)
                                             AGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGC                                                  >  SRR4302534.2859534/1‑94 (MQ=60)
                                               TCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGT                                                >  SRR4302534.4928717/1‑94 (MQ=60)
                                                CCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTG                                               >  SRR4302534.484204/1‑94 (MQ=60)
                                                CCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTG                                               >  SRR4302534.4516370/1‑94 (MQ=60)
                                                 CTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGGATTACTCGGTTGGTTACTCGGCGTGC                                              >  SRR4302534.3446405/1‑94 (MQ=60)
                                                  TGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCA                                             <  SRR4302534.394985/94‑1 (MQ=60)
                                                   GGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAA                                            <  SRR4302534.1966127/94‑1 (MQ=60)
                                                   GGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAA                                            >  SRR4302534.3683460/1‑94 (MQ=60)
                                                   GGAACAGCCGCCGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAA                                            <  SRR4302534.3358181/94‑1 (MQ=60)
                                                    GAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAAT                                           <  SRR4302534.1796688/94‑1 (MQ=60)
                                                    GAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAAT                                           >  SRR4302534.2959509/1‑94 (MQ=60)
                                                     AACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATA                                          <  SRR4302534.3972440/94‑1 (MQ=60)
                                                     AACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATA                                          <  SRR4302534.3173932/94‑1 (MQ=60)
                                                      ACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATAT                                         <  SRR4302534.5636950/94‑1 (MQ=60)
                                                         GGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCC                                      >  SRR4302534.2179992/1‑94 (MQ=60)
                                                         GGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCC                                      <  SRR4302534.2783807/94‑1 (MQ=60)
                                                           CGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCG                                    <  SRR4302534.1661485/94‑1 (MQ=60)
                                                            GCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGT                                   >  SRR4302534.3512635/1‑94 (MQ=60)
                                                              GGCGCTTTCTTGAAATCCGCTGTTTAAGCGCGCCGGCGTCGCGGGCAAATCTGGTTTTACTCGTTTGTTTACTCGGCGTGCAATATGCCCGTGC                                 <  SRR4302534.777640/94‑1 (MQ=60)
                                                               GCGCTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCG                                >  SRR4302534.5766286/1‑94 (MQ=60)
                                                                CGCTTGCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGC                               >  SRR4302534.4004270/1‑94 (MQ=60)
                                                                  CTTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCA                             >  SRR4302534.1619050/1‑94 (MQ=60)
                                                                   TTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAG                            <  SRR4302534.3086654/94‑1 (MQ=60)
                                                                   TTTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAG                            >  SRR4302534.1063075/1‑94 (MQ=60)
                                                                    TTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGT                           >  SRR4302534.6499715/1‑94 (MQ=60)
                                                                    TTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGT                           >  SRR4302534.922856/1‑94 (MQ=60)
                                                                    TTCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGT                           >  SRR4302534.1660259/1‑94 (MQ=60)
                                                                     TCTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTA                          <  SRR4302534.1863164/94‑1 (MQ=60)
                                                                      CTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAA                         <  SRR4302534.5806389/94‑1 (MQ=60)
                                                                      CTTGAAATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAA                         <  SRR4302534.6052168/94‑1 (MQ=60)
                                                                           AATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTG                    >  SRR4302534.3929771/1‑94 (MQ=60)
                                                                           AATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTG                    <  SRR4302534.1880328/94‑1 (MQ=60)
                                                                            ATCCGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGT                   >  SRR4302534.6409774/1‑94 (MQ=60)
                                                                               CGCTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGGGCAATATGCCCGTGCGCCAGTAATTTTGTTAG                <  SRR4302534.349982/94‑1 (MQ=60)
                                                                                 CTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTG              >  SRR4302534.6187600/1‑94 (MQ=60)
                                                                                 CTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTG              >  SRR4302534.5402944/1‑94 (MQ=60)
                                                                                 CTGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTG              <  SRR4302534.891096/94‑1 (MQ=60)
                                                                                  TGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGG             >  SRR4302534.3017324/1‑94 (MQ=60)
                                                                                  TGGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGG             <  SRR4302534.1344913/94‑1 (MQ=60)
                                                                                   GGTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGT            >  SRR4302534.2279935/1‑94 (MQ=60)
                                                                                    GTTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTC           <  SRR4302534.5348953/94‑1 (MQ=60)
                                                                                     TTAAGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCG          <  SRR4302534.3956526/94‑1 (MQ=60)
                                                                                        AGCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCA       >  SRR4302534.2593493/1‑94 (MQ=60)
                                                                                         GCGCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAA      >  SRR4302534.3923336/1‑94 (MQ=60)
                                                                                           GCGCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATA    >  SRR4302534.2207637/1‑94 (MQ=60)
                                                                                             GCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATC  >  SRR4302534.1093201/1‑94 (MQ=60)
                                                                                             GCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATC  >  SRR4302534.3015486/1‑94 (MQ=60)
                                                                                             GCCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATC  >  SRR4302534.3046541/1‑94 (MQ=60)
                                                                                             |                                                                                             
GCCGATTATCGATCTGGCGCTGCATATTGTTGGCGGTAGTGAGGCAGTCCTGGAACAGGCGCGGCGCTTTCTTGAAATCCGCTGGTTAAGCGCACCGGCGTCGCTGGCGAATCTGGTATTACTCGGTTGGTTACTCGGCGTGCAATATGCCCGTGCGCCAGTAATTTTGTTAGTGGTCGGCAATATC  >  NC_000913/4255698‑4255884

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑