Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,311,496 |
+C |
coding (301/408 nt) |
phnQ ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,311,495 | 1 | . | C | 99.6%
| 819.4
/ ‑4.0
| 235 | coding (302/408 nt) | phnQ | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base C (126/108); total (126/109) |
| Fisher's exact test for biased strand distribution p-value = 4.64e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.88e-01 |
Only 100 of 254 total aligned reads displayed.
GAGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCA‑CGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCG > NC_000913/4311403‑4311582
|
gggTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCa > 1:5725564/3‑93 (MQ=255)
gAGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCa < 1:3320176/93‑1 (MQ=255)
tAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCA‑ccg > 1:5844484/1‑91 (MQ=255)
tAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCA‑ccg > 1:629552/1‑91 (MQ=255)
aaTGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCA‑ccgt < 2:6000899/93‑4 (MQ=255)
gATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTcc > 2:5230834/1‑93 (MQ=255)
gATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTcc < 1:6272786/93‑1 (MQ=255)
gATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTcc < 1:1044572/93‑1 (MQ=255)
aTTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCg < 1:4211145/93‑1 (MQ=255)
aTTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCg > 2:3536429/1‑93 (MQ=255)
aTGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGccc < 1:1704078/93‑1 (MQ=255)
tgtgGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCa < 1:3524309/93‑1 (MQ=255)
tgGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAgg > 1:5982219/1‑93 (MQ=255)
tgGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAgg > 2:787099/1‑93 (MQ=255)
ggATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGc > 2:4416073/1‑93 (MQ=255)
ggATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCACTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGc > 2:4527222/1‑93 (MQ=255)
aTAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCg < 1:563374/93‑1 (MQ=255)
tAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGa < 2:1399528/93‑1 (MQ=255)
tAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGa > 2:2280278/1‑93 (MQ=255)
tAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGa > 2:5656855/1‑93 (MQ=255)
tAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGa > 1:6033366/1‑93 (MQ=255)
agagTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGat < 1:3401391/93‑1 (MQ=255)
gggTTTCTTTTTGAGGTTGGCTAATGACACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGata > 1:6175621/3‑93 (MQ=255)
gagTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGata > 2:852673/1‑93 (MQ=255)
gagTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGata < 1:4397103/93‑1 (MQ=255)
agTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGatat > 2:5292702/1‑93 (MQ=255)
agTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGatat > 2:583724/1‑93 (MQ=255)
gTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGAtatt > 2:204563/1‑93 (MQ=255)
gTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGAtatt > 2:5136815/1‑93 (MQ=255)
gTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGAtatt > 2:2129600/1‑93 (MQ=255)
tttCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGAtatta > 2:473459/1‑93 (MQ=255)
ttCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGAtattat > 1:4038014/1‑93 (MQ=255)
ttCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGAtattat > 1:1870834/1‑93 (MQ=255)
ttttGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATcgac < 2:3148699/93‑1 (MQ=255)
ttttGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATcgac < 1:2428378/93‑1 (MQ=255)
ttttGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATcgac < 1:1335947/93‑1 (MQ=255)
tttGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATcgacg < 2:6193377/93‑1 (MQ=255)
ggTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACAcc > 1:469833/1‑93 (MQ=255)
tGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCAtt < 2:421225/93‑1 (MQ=255)
tGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCAtt < 2:5007394/93‑1 (MQ=255)
tGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCCATATTATCGACGACACCAtt < 1:6219486/93‑1 (MQ=255)
ggCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTg > 1:1842950/1‑93 (MQ=255)
ggCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTg < 2:1289781/93‑1 (MQ=255)
gCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTgg < 1:1435293/93‑1 (MQ=255)
aaTGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCaa > 2:281608/1‑93 (MQ=255)
aaTGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCaa > 1:2623644/1‑93 (MQ=255)
aTGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAat < 2:3034391/93‑1 (MQ=255)
tGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAata > 2:4295405/1‑93 (MQ=255)
aaaCGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATAtt > 1:1949044/1‑93 (MQ=255)
aaaCGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATAtt > 2:5940716/1‑93 (MQ=255)
aaaCGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATAtt > 1:907894/1‑93 (MQ=255)
aaCGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTc > 2:6073692/1‑93 (MQ=255)
cGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcag > 1:3465113/1‑93 (MQ=255)
gCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcagc < 1:2684675/93‑1 (MQ=255)
gCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcagc > 1:2238197/1‑93 (MQ=255)
tttCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcagcag > 1:1112549/1‑93 (MQ=255)
tttCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcagcag < 1:2837899/93‑1 (MQ=255)
tCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGc < 1:2062925/93‑1 (MQ=255)
tCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGc < 1:768117/93‑1 (MQ=255)
gCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGAt < 2:2733702/93‑1 (MQ=255)
gCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGAt > 1:2000185/1‑93 (MQ=255)
ccTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGAt < 1:2602587/92‑1 (MQ=255)
aTTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTaa < 2:2464364/93‑1 (MQ=255)
aTTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTaa > 2:1516434/1‑93 (MQ=255)
aTTTCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTaa > 1:3880410/1‑93 (MQ=255)
tttCTTTTATTCACCCCGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAAt < 2:5735549/93‑1 (MQ=255)
tCTTTTATTCCCCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGa < 2:5564563/93‑1 (MQ=255)
tCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGa < 2:2008904/93‑1 (MQ=255)
tCTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGa < 1:5024281/93‑1 (MQ=255)
cTTTTATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGAc < 1:3805007/93‑1 (MQ=255)
tttATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGc < 2:176110/93‑1 (MQ=255)
tttATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGc < 1:4533902/93‑1 (MQ=255)
ttATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTACTGACGCt < 1:6359073/93‑1 (MQ=255)
tATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCtt > 1:1579154/1‑93 (MQ=255)
tATTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCtt > 1:4453370/1‑93 (MQ=255)
aTTCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTta > 2:5318276/1‑93 (MQ=255)
ttCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTtat < 2:668444/93‑1 (MQ=255)
ttCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTtat > 1:3045558/1‑93 (MQ=255)
tCACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTtata > 2:4669700/1‑93 (MQ=255)
cACCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATaa < 1:5592821/93‑1 (MQ=255)
aCCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAc > 2:1865232/1‑93 (MQ=255)
aCCCTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAc > 2:1595422/1‑93 (MQ=255)
cccTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAcc > 2:3924162/1‑93 (MQ=255)
cccTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAcc > 2:3491102/1‑93 (MQ=255)
ccTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAccc > 1:4142034/1‑93 (MQ=255)
ccTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAccc > 2:3713882/1‑93 (MQ=255)
cTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCt > 1:4895843/1‑93 (MQ=255)
cTGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCt < 2:6311276/93‑1 (MQ=255)
tGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTg < 1:691006/93‑1 (MQ=255)
tGCTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTg < 1:3671577/93‑1 (MQ=255)
cTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGAc < 2:3731042/93‑1 (MQ=255)
cTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGAc < 1:5519449/93‑1 (MQ=255)
cTCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGAc < 1:309909/93‑1 (MQ=255)
tCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGAcc < 2:2554007/93‑1 (MQ=255)
tCACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGAcc > 1:9964/1‑93 (MQ=255)
tCACCCTGTCCCC‑CGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGAcc < 2:2572299/93‑1 (MQ=255)
cACGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCg > 1:5301653/1‑93 (MQ=255)
aCGCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGt > 2:906596/1‑93 (MQ=255)
gCTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTgg > 1:3957897/1‑93 (MQ=255)
cTGT‑CCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTggg > 1:5176854/1‑93 (MQ=255)
|
GAGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGT‑CCA‑CGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCG > NC_000913/4311403‑4311582
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GAGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑A‑CGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTAT > NC_000913/4311403‑4311589
|
GAGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑A‑C < SRR4302534.3408950/94‑1 (MQ=60)
GTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑A‑Ccg < SRR4302534.3190475/94‑3 (MQ=60)
GTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑A‑Ccg > SRR4302534.644821/1‑92 (MQ=60)
GTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑A‑Ccg > SRR4302534.6003156/1‑92 (MQ=60)
TAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑A‑Ccgt > SRR4302534.1124291/1‑91 (MQ=60)
TAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑A‑Ccgt > SRR4302534.163361/1‑91 (MQ=60)
AATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTT < SRR4302534.4723073/94‑1 (MQ=60)
ATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTC > SRR4302534.5062284/1‑94 (MQ=60)
ATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTC > SRR4302534.80845/1‑94 (MQ=60)
TGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCC < SRR4302534.99033/94‑1 (MQ=60)
GATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCG < SRR4302534.1071554/94‑1 (MQ=60)
GATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCG < SRR4302534.6442608/94‑1 (MQ=60)
GATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCG > SRR4302534.1554099/1‑94 (MQ=60)
ATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGG < SRR4302534.4324750/94‑1 (MQ=60)
TAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCC > SRR4302534.3536167/1‑94 (MQ=60)
AATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCC > SRR4302534.2410199/1‑94 (MQ=60)
ATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCA > SRR4302534.6396051/1‑94 (MQ=60)
ATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCA < SRR4302534.6500769/94‑1 (MQ=60)
ATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCA < SRR4302534.1748353/94‑1 (MQ=60)
TGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAG > SRR4302534.2732747/1‑94 (MQ=60)
TGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAG < SRR4302534.3619100/94‑1 (MQ=60)
GTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGG > SRR4302534.6144725/1‑94 (MQ=60)
GGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCC < SRR4302534.4629768/94‑1 (MQ=60)
GGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCC < SRR4302534.313167/94‑1 (MQ=60)
ATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGA > SRR4302534.6197327/1‑94 (MQ=60)
ATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGA < SRR4302534.577228/94‑1 (MQ=60)
ATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGA > SRR4302534.706364/1‑94 (MQ=60)
TAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGAT < SRR4302534.825970/94‑1 (MQ=60)
AGGGTTTCTTTTTGAGGTTGGCTAATGACACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATA > SRR4302534.6343661/1‑94 (MQ=60)
AGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATA < SRR4302534.3492712/94‑1 (MQ=60)
GAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATAT < SRR4302534.4515734/94‑1 (MQ=60)
GTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTA < SRR4302534.201951/94‑1 (MQ=60)
TTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTAT > SRR4302534.1919516/1‑94 (MQ=60)
TTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTAT > SRR4302534.4146277/1‑94 (MQ=60)
TTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTAT < SRR4302534.878064/94‑1 (MQ=60)
CTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGA > SRR4302534.4060068/1‑94 (MQ=60)
TTTTGAGGTTGTCTAATGAACCGCTTTCCGTTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACG < SRR4302534.1970202/94‑1 (MQ=60)
TTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACG < SRR4302534.2492948/94‑1 (MQ=60)
TTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACG < SRR4302534.1371160/94‑1 (MQ=60)
TTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGAC < SRR4302534.1821505/94‑1 (MQ=60)
TGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACA > SRR4302534.2688859/1‑94 (MQ=60)
GAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACAC > SRR4302534.2627224/1‑94 (MQ=60)
AGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACC > SRR4302534.4486279/1‑94 (MQ=60)
AGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACC > SRR4302534.1291893/1‑94 (MQ=60)
AGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACC > SRR4302534.481669/1‑94 (MQ=60)
GGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCA < SRR4302534.6200990/94‑1 (MQ=60)
GGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCA > SRR4302534.1202471/1‑94 (MQ=60)
GGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCA < SRR4302534.4602593/94‑1 (MQ=60)
GTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCAT < SRR4302534.5853526/94‑1 (MQ=60)
ggtGCTAATGAAACGCTTTCCGCTAGGTCTTTGATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATT < SRR4302534.5709102/91‑1 (MQ=60)
TTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATT > SRR4302534.1866339/1‑94 (MQ=60)
TGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCCCCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTG < SRR4302534.6388429/94‑1 (MQ=60)
TGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTG > SRR4302534.2914197/1‑94 (MQ=60)
TGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTG > SRR4302534.1890848/1‑94 (MQ=60)
TGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCCATATTATCGACGACACCATTG < SRR4302534.6388430/94‑1 (MQ=60)
GGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGG < SRR4302534.4543829/94‑1 (MQ=60)
GCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGC < SRR4302534.1473061/94‑1 (MQ=60)
GCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGC > SRR4302534.6182511/1‑94 (MQ=60)
TAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACCGCATTGGCAA > SRR4302534.2844855/1‑94 (MQ=60)
TAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAA > SRR4302534.2693049/1‑94 (MQ=60)
TAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAA < SRR4302534.4005948/94‑1 (MQ=60)
AATGAAACGCTTTCCCCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGGCACCATTGGCAAT < SRR4302534.6132993/94‑1 (MQ=60)
ATGAAACTCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGATGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATA < SRR4302534.3953951/94‑1 (MQ=60)
GAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATT > SRR4302534.2000059/1‑94 (MQ=60)
GAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATT > SRR4302534.930963/1‑94 (MQ=60)
AAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTC > SRR4302534.3494495/1‑94 (MQ=60)
AACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCA > SRR4302534.6446352/1‑94 (MQ=60)
AACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCA > SRR4302534.43045/1‑94 (MQ=60)
ACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAG < SRR4302534.3093884/94‑1 (MQ=60)
ACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAG < SRR4302534.2558582/94‑1 (MQ=60)
ACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAG > SRR4302534.3558264/1‑94 (MQ=60)
CGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGC > SRR4302534.2297508/1‑94 (MQ=60)
CGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGC < SRR4302534.3859870/94‑1 (MQ=60)
GCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCA < SRR4302534.5879336/94‑1 (MQ=60)
GCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCA < SRR4302534.2755633/94‑1 (MQ=60)
CTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAG < SRR4302534.5027571/94‑1 (MQ=60)
CTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAG > SRR4302534.1141589/1‑94 (MQ=60)
CTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAG > SRR4302534.357648/1‑94 (MQ=60)
TTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGG < SRR4302534.2912469/94‑1 (MQ=60)
TTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGC > SRR4302534.647205/1‑94 (MQ=60)
TCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCG < SRR4302534.2116868/94‑1 (MQ=60)
TCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCG < SRR4302534.787211/94‑1 (MQ=60)
CGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGAT > SRR4302534.3651175/1‑94 (MQ=60)
CGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGAT > SRR4302534.500132/1‑94 (MQ=60)
CGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGAT > SRR4302534.2052565/1‑94 (MQ=60)
GCTATTTCTTTTATTCACCCTGCTCACGCGGTCCGC‑CGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATT < SRR4302534.2288487/94‑1 (MQ=60)
CCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATT < SRR4302534.2671425/94‑1 (MQ=60)
CTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATaatctatagatcgg > SRR4302534.1581690/1‑80 (MQ=60)
CTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTA < SRR4302534.994936/94‑1 (MQ=60)
CTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTA > SRR4302534.6228581/1‑94 (MQ=60)
TATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAA > SRR4302534.3984609/1‑94 (MQ=60)
TCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGAC > SRR4302534.6400423/1‑94 (MQ=60)
TCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGAC < SRR4302534.5159992/94‑1 (MQ=60)
CTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACG < SRR4302534.3907174/94‑1 (MQ=60)
TTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCT < SRR4302534.4656764/94‑1 (MQ=60)
TTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTACTGACGCTT < SRR4302534.6530810/94‑1 (MQ=60)
TTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTT > SRR4302534.1620469/1‑94 (MQ=60)
TTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTT > SRR4302534.4573746/1‑94 (MQ=60)
TTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTT < SRR4302534.4157325/94‑1 (MQ=60)
ATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTAT > SRR4302534.3125442/1‑94 (MQ=60)
ATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTAT > SRR4302534.4121203/1‑94 (MQ=60)
TTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATA > SRR4302534.4391916/1‑94 (MQ=60)
TCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAA > SRR4302534.1981517/1‑94 (MQ=60)
TCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAA > SRR4302534.5554169/1‑94 (MQ=60)
TCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAA > SRR4302534.5705230/1‑94 (MQ=60)
CACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAC < SRR4302534.5744022/94‑1 (MQ=60)
CACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAC > SRR4302534.4149669/1‑94 (MQ=60)
CACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAC > SRR4302534.1372191/1‑94 (MQ=60)
CACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAC > SRR4302534.1900382/1‑94 (MQ=60)
ACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACC > SRR4302534.5779121/1‑94 (MQ=60)
CCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCC > SRR4302534.4253813/1‑94 (MQ=60)
CCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCC > SRR4302534.5900183/1‑94 (MQ=60)
CCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCT < SRR4302534.3332600/94‑1 (MQ=60)
CCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCT > SRR4302534.5028580/1‑94 (MQ=60)
CCTGCGCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCT < SRR4302534.5277404/94‑1 (MQ=60)
TGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGA < SRR4302534.707917/94‑1 (MQ=60)
TGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGA < SRR4302534.3770287/94‑1 (MQ=60)
CTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTTGCAATATTCAGCAGGCGATTAATGACGCTTATACCCCTGACC < SRR4302534.6531547/94‑1 (MQ=60)
CTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACC < SRR4302534.2412121/94‑1 (MQ=60)
CTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACC < SRR4302534.317912/94‑1 (MQ=60)
CTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACC < SRR4302534.2096145/94‑1 (MQ=60)
CTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACC > SRR4302534.10221/1‑94 (MQ=60)
CTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACC > SRR4302534.5298879/1‑94 (MQ=60)
CTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACC < SRR4302534.5668380/94‑1 (MQ=60)
TCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCG > SRR4302534.5380804/1‑94 (MQ=60)
TCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCG > SRR4302534.5444711/1‑94 (MQ=60)
ACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTG < SRR4302534.370825/94‑1 (MQ=60)
ACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTG > SRR4302534.51258/1‑94 (MQ=60)
ACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTG < SRR4302534.603492/94‑1 (MQ=60)
ACGCGGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTG < SRR4302534.5517132/94‑1 (MQ=60)
CGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGG > SRR4302534.4063874/1‑94 (MQ=60)
CGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGG > SRR4302534.3438541/1‑94 (MQ=60)
GCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGG > SRR4302534.5316349/1‑94 (MQ=60)
GCTGTCC‑ACCGTTCCGACCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGG < SRR4302534.3931056/94‑1 (MQ=60)
CTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCGGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGC < SRR4302534.2726967/94‑1 (MQ=60)
TGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCG > SRR4302534.2111018/1‑94 (MQ=60)
TCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAG < SRR4302534.6030883/94‑1 (MQ=60)
C‑C‑CGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACT < SRR4302534.3009015/94‑1 (MQ=60)
cacCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGAC > SRR4302534.4304340/4‑94 (MQ=60)
acCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACT > SRR4302534.5871872/3‑94 (MQ=60)
C‑CGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTA < SRR4302534.286485/94‑1 (MQ=60)
C‑CGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTA > SRR4302534.3297166/1‑94 (MQ=60)
CGCTCCGCCCCAGGCCTATATTATCGACGACACCATTGGCAATATTCAGCAGTCGATTAATGACGCTTATAACACTGACCGTGCGCGCGACTAT > SRR4302534.6410451/1‑94 (MQ=60)
|
GAGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑A‑CGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTAT > NC_000913/4311403‑4311589
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
