Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,325,494	C→G	A261G (GCG→GGG)	yjdA →	putative vimentin

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,325,494	0	C	G	99.6%	805.7 / NA	231	A261G (GCG→GGG)	yjdA	putative vimentin
Reads supporting (aligned to +/- strand): ref base C (1/0); new base G (117/113); total (118/113)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 238 total aligned reads displayed.

AGTTGACGTTACTGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGCGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTGGCGGTGGGGCAATCGGTGC  >  NC_000913/4325404‑4325583

 gTTGACGTTACTGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGt                                                                                        >  1:1642427/1‑93 (MQ=255)

 gTTGACGTTACTGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGt                                                                                        >  1:5499908/1‑93 (MQ=255)

 gTTGACGTTACTGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGt                                                                                        >  1:2861119/1‑93 (MQ=255)

  ttGACGTTACTGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTa                                                                                       >  2:5254723/1‑93 (MQ=255)

   tGACGTTACTGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTAc                                                                                      <  2:1904771/93‑1 (MQ=255)

    gACGTTACTGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACt                                                                                     <  2:6200698/93‑1 (MQ=255)

    gACGTTACTGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACt                                                                                     >  2:1142413/1‑93 (MQ=255)

    gACGTTACTGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACt                                                                                     <  1:4734783/93‑1 (MQ=255)

    gACGTTACTGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACt                                                                                     <  1:4301262/93‑1 (MQ=255)

     aCGTTACTGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTg                                                                                    >  2:2675581/1‑93 (MQ=255)

      cGTTACTGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTgg                                                                                   <  1:5946903/93‑1 (MQ=255)

       gTTACTGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGc                                                                                  >  1:1885632/1‑93 (MQ=255)

       gTTACTGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGc                                                                                  <  1:2395653/93‑1 (MQ=255)

        ttACTGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCg                                                                                 >  2:3880317/1‑93 (MQ=255)

          aCTGGATCCCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGt                                                                               <  1:630681/93‑1 (MQ=255)

          aCTGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGt                                                                               <  1:2720612/93‑1 (MQ=255)

           cTGGATACCCCCGGGCGAAATGAAGCCGGGCAACCGCATCTGCAAAAAATTCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTg                                                                              <  1:4617549/93‑1 (MQ=255)

            tGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGc                                                                             <  2:673756/93‑1 (MQ=255)

            tGGATACCCCCGCGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGc                                                                             <  2:1484840/93‑1 (MQ=255)

             ggATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCt                                                                            <  2:1805429/93‑1 (MQ=255)

                tccccccGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGa                                                                         <  1:4440500/91‑1 (MQ=255)

                tACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGa                                                                         >  1:729540/1‑93 (MQ=255)

                 aCCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGAt                                                                        >  1:3125375/1‑93 (MQ=255)

                 aCCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGCGCTgggt                                                                        >  2:1690130/1‑91 (MQ=255)

                  cccccGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGAtt                                                                       >  2:3273179/1‑93 (MQ=255)

                   ccccGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATta                                                                      <  2:4349679/93‑1 (MQ=255)

                    cccGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATtat                                                                     <  2:3014539/93‑1 (MQ=255)

                     ccGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATtata                                                                    >  2:3779413/1‑93 (MQ=255)

                     ccGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATtata                                                                    >  2:1616478/1‑93 (MQ=255)

                     ccGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATtata                                                                    <  1:2036530/93‑1 (MQ=255)

                     ccGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGGGCGGGATtata                                                                    >  2:4780205/1‑93 (MQ=255)

                      cGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATAc                                                                   <  2:618304/93‑1 (MQ=255)

                       gggCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACg                                                                  >  2:5403658/1‑93 (MQ=255)

                        ggCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGc                                                                 >  2:6024706/1‑93 (MQ=255)

                          ccAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCaa                                                               >  2:488974/1‑93 (MQ=255)

                           cAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAAc                                                              <  1:4864585/93‑1 (MQ=255)

                           cAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAAc                                                              <  1:5601344/93‑1 (MQ=255)

                             aaTGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTg                                                            >  1:4971260/1‑93 (MQ=255)

                             aaTGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTg                                                            <  2:1212892/93‑1 (MQ=255)

                             aaTGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTg                                                            >  1:1511172/1‑93 (MQ=255)

                              aTGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGa                                                           <  1:507415/93‑1 (MQ=255)

                              aTGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGa                                                           <  1:3521957/93‑1 (MQ=255)

                              aTGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGAGCTGGATTATACGCAACTGa                                                           >  2:1836148/1‑93 (MQ=255)

                                gAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGaaa                                                         <  1:1115745/93‑1 (MQ=255)

                                 aaGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAAt                                                        <  2:394753/93‑1 (MQ=255)

                                 aaGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAAt                                                        >  2:2900306/1‑93 (MQ=255)

                                   gCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCg                                                      <  1:3225722/93‑1 (MQ=255)

                                   gCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCg                                                      >  1:4150983/1‑93 (MQ=255)

                                   gCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGCGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCg                                                      >  1:305498/1‑93 (MQ=255)

                                    ccGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGa                                                     <  1:5781800/93‑1 (MQ=255)

                                     cGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGAt                                                    >  1:5267109/1‑93 (MQ=255)

                                      gggCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGAtc                                                   <  2:237840/93‑1 (MQ=255)

                                       gacAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGAtct                                                  <  1:3297686/91‑1 (MQ=255)

                                          aaCCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCg                                               <  1:6383753/93‑1 (MQ=255)

                                          aaCCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCg                                               >  1:3766846/1‑93 (MQ=255)

                                          aaCCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGGGCTGGATTATACGCAACTGAAATCGACATCCg                                               >  1:2835622/1‑93 (MQ=255)

                                           aCCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGa                                              >  2:2401093/1‑93 (MQ=255)

                                           aCCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGa                                              <  2:4995908/93‑1 (MQ=255)

                                             cGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATg                                            <  1:6118954/93‑1 (MQ=255)

                                             cGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATg                                            >  1:853980/1‑93 (MQ=255)

                                              gCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGa                                           >  2:5737254/1‑93 (MQ=255)

                                              gCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGa                                           >  2:5383377/1‑93 (MQ=255)

                                                 tCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAaga                                        >  1:1957837/1‑93 (MQ=255)

                                                 tCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAaga                                        >  1:2542153/1‑93 (MQ=255)

                                                 tCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAaga                                        <  2:6377852/93‑1 (MQ=255)

                                                 tCTGCAAAAAATGCTTAACCAGCAGCTGGAACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAaga                                        >  1:4293073/1‑93 (MQ=255)

                                                   tGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAgg                                      >  2:3711330/1‑93 (MQ=255)

                                                    gCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAggc                                     >  2:6077435/1‑92 (MQ=255)

                                                    gCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGt                                     >  1:3396576/1‑93 (MQ=255)

                                                    gCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGt                                     <  1:2100078/93‑1 (MQ=255)

                                                     cAAAAAATGCTTAGCCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTc                                    <  2:5606885/93‑1 (MQ=255)

                                                     cAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTc                                    >  1:2290723/1‑93 (MQ=255)

                                                      aaaaaaTGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGGAGAGGTcc                                   >  1:4917150/1‑93 (MQ=255)

                                                      aaaaaaTGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTcc                                   >  1:3730281/1‑93 (MQ=255)

                                                      aaaaaaTGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTcc                                   <  2:2578446/93‑1 (MQ=255)

                                                      aaaaaaTGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTcc                                   <  1:1002849/93‑1 (MQ=255)

                                                      aaaaaaTGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTcc                                   >  1:895217/1‑93 (MQ=255)

                                                      aaaaaaTGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTcc                                   <  1:4818818/93‑1 (MQ=255)

                                                       aaaaaTGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCg                                  >  2:354548/1‑93 (MQ=255)

                                                        aaaaTGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGt                                 <  2:2236866/93‑1 (MQ=255)

                                                        aaaaTGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGt                                 >  1:1663144/1‑93 (MQ=255)

                                                         aaaTGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTg                                <  1:6087508/93‑1 (MQ=255)

                                                          aaTGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTgg                               >  2:4646940/1‑92 (MQ=255)

                                                          aaTGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGa                               <  1:5737817/93‑1 (MQ=255)

                                                          aaTGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGa                               <  1:3915534/93‑1 (MQ=255)

                                                           aTGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAg                              >  1:1180852/1‑93 (MQ=255)

                                                                tAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGCTGAAGAGGTCCGTGAGGCGAt                         >  2:5138521/1‑93 (MQ=255)

                                                                tAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGAt                         <  2:5312430/93‑1 (MQ=255)

                                                                   ccAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGAtttt                      <  2:4385078/93‑1 (MQ=255)

                                                                    cagcagCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTg                     >  2:150181/1‑93 (MQ=255)

                                                                        agcTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTGGcag                 >  2:4907289/1‑91 (MQ=255)

                                                                         gcTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTGGCGGt                >  2:3312323/1‑93 (MQ=255)

                                                                          cTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTGGCGGTg               >  1:4019724/1‑93 (MQ=255)

                                                                          cTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTGGCGGTg               <  2:1537912/93‑1 (MQ=255)

                                                                           tGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTGGCGGTgg              <  2:2743462/93‑1 (MQ=255)

                                                                           tGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTGGCGGTgg              <  2:4122549/93‑1 (MQ=255)

                                                                                  cgcCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTGGCGGTGGGGCAATc       <  2:4513875/93‑1 (MQ=255)

                                                                                   gcCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTGGCGGTGGGGCAATCg      >  2:1423805/1‑93 (MQ=255)

                                                                                     cTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTGGCGGTGGGGCAATCGGt    <  2:5807887/93‑1 (MQ=255)

                                                                                       cgggggTACTAGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTGGCGGTGGGGCAATCGGTGc  <  2:820875/93‑1 (MQ=255)

AGTTGACGTTACTGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGCGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTGGCGGTGGGGCAATCGGTGC  >  NC_000913/4325404‑4325583

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GTCAGTTGACGTTACTGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGCGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTGGCGGTGGGGCAATCGGTGCCGCT  >  NC_000913/4325401‑4325587

GTCAGTTGACGTTACTGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGG                                                                                               <  SRR4302534.3702859/94‑1 (MQ=60)

  CAGTTGACGTTACTGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGG                                                                                             <  SRR4302534.3015778/94‑1 (MQ=60)

  CAGTTGACGTTACTGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGG                                                                                             >  SRR4302534.4327784/1‑94 (MQ=60)

   AGTTGACGTTACTGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGT                                                                                            >  SRR4302534.2936266/1‑94 (MQ=60)

   AGTTGACGTTACTGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGT                                                                                            >  SRR4302534.5648229/1‑94 (MQ=60)

   AGTTGACGTTACTGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGT                                                                                            >  SRR4302534.1685251/1‑94 (MQ=60)

   AGTTGACGTTACTGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGT                                                                                            <  SRR4302534.6261984/94‑1 (MQ=60)

    GTTGACGTTACTGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTA                                                                                           >  SRR4302534.4878026/1‑94 (MQ=60)

     TTGACGTTACTGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTAC                                                                                          <  SRR4302534.3174493/94‑1 (MQ=60)

      TGACGTTACTGGATCCCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACT                                                                                         <  SRR4302534.5301174/94‑1 (MQ=60)

       GACGTTACTGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTG                                                                                        <  SRR4302534.4863338/94‑1 (MQ=60)

       GACGTTACTGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTG                                                                                        <  SRR4302534.4417856/94‑1 (MQ=60)

         CGTTACTGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGC                                                                                      <  SRR4302534.4376994/94‑1 (MQ=60)

         CGTTACTGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGC                                                                                      >  SRR4302534.1934785/1‑94 (MQ=60)

         CGTTACTGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGC                                                                                      <  SRR4302534.6108378/94‑1 (MQ=60)

          GTTACTGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCG                                                                                     <  SRR4302534.2459304/94‑1 (MQ=60)

             TCTGGATCCCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTG                                                                                  <  SRR4302534.4198069/94‑1 (MQ=60)

             ACTGGATCCCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTG                                                                                  <  SRR4302534.645980/94‑1 (MQ=60)

             ACTGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTG                                                                                  <  SRR4302534.2792406/94‑1 (MQ=60)

              CTGGATACCCCCGGGCGAAATGAAGCCGGGCAACCGCATCTGCAAAAAATTCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGC                                                                                 <  SRR4302534.4742849/94‑1 (MQ=60)

               TGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCT                                                                                >  SRR4302534.3097605/1‑94 (MQ=60)

               TGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCT                                                                                >  SRR4302534.5795443/1‑94 (MQ=60)

               TGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCT                                                                                >  SRR4302534.2118755/1‑94 (MQ=60)

               TGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCT                                                                                <  SRR4302534.1753449/94‑1 (MQ=60)

                GGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTG                                                                               <  SRR4302534.3771198/94‑1 (MQ=60)

                  ATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGA                                                                             <  SRR4302534.2065456/94‑1 (MQ=60)

                  ATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGA                                                                             >  SRR4302534.747562/1‑94 (MQ=60)

                  ATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGA                                                                             <  SRR4302534.1694133/94‑1 (MQ=60)

                   TCCCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGAT                                                                            <  SRR4302534.4560456/94‑1 (MQ=60)

                   TACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGAT                                                                            >  SRR4302534.3207541/1‑94 (MQ=60)

                   TACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGAT                                                                            >  SRR4302534.1571170/1‑94 (MQ=60)

                    ACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATT                                                                           <  SRR4302534.3125668/94‑1 (MQ=60)

                     CCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTA                                                                          <  SRR4302534.5033951/94‑1 (MQ=60)

                     CCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTA                                                                          <  SRR4302534.2588045/94‑1 (MQ=60)

                       CCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATA                                                                        <  SRR4302534.6450114/94‑1 (MQ=60)

                        CCGGGCCAAATGAAGCCGGGCAACCGCATTTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATAC                                                                       <  SRR4302534.6097847/94‑1 (MQ=60)

                        CCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATAC                                                                       <  SRR4302534.3560710/94‑1 (MQ=60)

                        CCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATAC                                                                       <  SRR4302534.2089785/94‑1 (MQ=60)

                         TGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACG                                                                      >  SRR4302534.3423/1‑94 (MQ=60)

                          GGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGC                                                                     >  SRR4302534.3222609/1‑94 (MQ=60)

                            GCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAA                                                                   >  SRR4302534.4082898/1‑94 (MQ=60)

                              CAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACT                                                                 <  SRR4302534.4996546/94‑1 (MQ=60)

                              CAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACT                                                                 <  SRR4302534.5752825/94‑1 (MQ=60)

                               AAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTG                                                                >  SRR4302534.3915224/1‑94 (MQ=60)

                               AAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTG                                                                >  SRR4302534.1550902/1‑94 (MQ=60)

                               AAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTG                                                                >  SRR4302534.5105849/1‑94 (MQ=60)

                                 ATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAA                                                              <  SRR4302534.3616690/94‑1 (MQ=60)

                                 ATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAA                                                              <  SRR4302534.520044/94‑1 (MQ=60)

                                  TGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAA                                                             <  SRR4302534.2662773/94‑1 (MQ=60)

                                   GAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAAT                                                            <  SRR4302534.1144876/94‑1 (MQ=60)

                                   GAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAAT                                                            >  SRR4302534.5815774/1‑94 (MQ=60)

                                   GAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAAT                                                            <  SRR4302534.5160993/94‑1 (MQ=60)

                                    AAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATC                                                           <  SRR4302534.5308430/94‑1 (MQ=60)

                                    AAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATC                                                           <  SRR4302534.4893942/94‑1 (MQ=60)

                                     AGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCG                                                          >  SRR4302534.4263035/1‑94 (MQ=60)

                                     AGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGCGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCG                                                          >  SRR4302534.313374/1‑94 (MQ=60)

                                      GCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGA                                                         <  SRR4302534.3311406/94‑1 (MQ=60)

                                       CCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGAT                                                        >  SRR4302534.5409388/1‑94 (MQ=60)

                                       CCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGAT                                                        <  SRR4302534.5938637/94‑1 (MQ=60)

                                        CGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATC                                                       >  SRR4302534.2031732/1‑94 (MQ=60)

                                          GACAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTC                                                     <  SRR4302534.3385676/94‑1 (MQ=60)

                                            CAACCGCATCTGCAAAAAATTCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTTGATTATACTCAACTGAAATCGATCTCCA                                                   >  SRR4302534.6482892/1‑94 (MQ=60)

                                            CAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCG                                                   >  SRR4302534.3867974/1‑94 (MQ=60)

                                            CAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCG                                                   <  SRR4302534.2427132/94‑1 (MQ=60)

                                            CAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCG                                                   >  SRR4302534.6180092/1‑94 (MQ=60)

                                            CAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGGGCTGGATTATACGCAACTGAAATCGACATCCG                                                   >  SRR4302534.2910122/1‑94 (MQ=60)

                                             AACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGA                                                  <  SRR4302534.6556200/94‑1 (MQ=60)

                                              ACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGAT                                                 <  SRR4302534.1226483/94‑1 (MQ=60)

                                               CCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATG                                                >  SRR4302534.875525/1‑94 (MQ=60)

                                                CGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGA                                               <  SRR4302534.6285401/94‑1 (MQ=60)

                                                CGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGA                                               >  SRR4302534.3373046/1‑94 (MQ=60)

                                                CGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGA                                               >  SRR4302534.5516680/1‑94 (MQ=60)

                                                CGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGAGCTGGATTATACGCAACTGAAATCGATCTCCGATGA                                               >  SRR4302534.3381076/1‑94 (MQ=60)

                                                   ATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGA                                            >  SRR4302534.2009067/1‑94 (MQ=60)

                                                   ATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGA                                            >  SRR4302534.2609588/1‑94 (MQ=60)

                                                   ATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGA                                            >  SRR4302534.2890661/1‑94 (MQ=60)

                                                   ATCTGCAAAAAATGCTTAACCAGCAGCTGGAACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGA                                            >  SRR4302534.4409391/1‑94 (MQ=60)

                                                     CTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGG                                          >  SRR4302534.1945026/1‑94 (MQ=60)

                                                     CTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGG                                          >  SRR4302534.4552472/1‑94 (MQ=60)

                                                      TGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGT                                         >  SRR4302534.172223/1‑94 (MQ=60)

                                                      TGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGT                                         >  SRR4302534.3487725/1‑94 (MQ=60)

                                                       GCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTC                                        >  SRR4302534.2351528/1‑94 (MQ=60)

                                                       GCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTC                                        <  SRR4302534.2155194/94‑1 (MQ=60)

                                                        CAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGGAGAGGTCC                                       >  SRR4302534.5050419/1‑94 (MQ=60)

                                                        CAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCC                                       >  SRR4302534.3830520/1‑94 (MQ=60)

                                                        CAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCC                                       >  SRR4302534.3830521/1‑94 (MQ=60)

                                                        CAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCC                                       >  SRR4302534.917906/1‑94 (MQ=60)

                                                         AAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCG                                      <  SRR4302534.1028568/94‑1 (MQ=60)

                                                         AAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCG                                      <  SRR4302534.4949604/94‑1 (MQ=60)

                                                          AAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGT                                     >  SRR4302534.1706437/1‑94 (MQ=60)

                                                           AAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTG                                    <  SRR4302534.5075822/94‑1 (MQ=60)

                                                            AAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGA                                   <  SRR4302534.6253043/94‑1 (MQ=60)

                                                            AAATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGA                                   >  SRR4302534.4775944/1‑94 (MQ=60)

                                                             AATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAG                                  >  SRR4302534.1211891/1‑94 (MQ=60)

                                                             AATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAG                                  >  SRR4302534.2873804/1‑94 (MQ=60)

                                                             AATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAG                                  <  SRR4302534.905063/94‑1 (MQ=60)

                                                             AATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAG                                  <  SRR4302534.4020506/94‑1 (MQ=60)

                                                             AATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAG                                  <  SRR4302534.793114/94‑1 (MQ=60)

                                                             AATGCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAG                                  <  SRR4302534.5893318/94‑1 (MQ=60)

                                                                GCTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCG                               <  SRR4302534.4950142/94‑1 (MQ=60)

                                                                 CTTAACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGA                              >  SRR4302534.2298212/1‑94 (MQ=60)

                                                                    AACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTT                           >  SRR4302534.5900278/1‑94 (MQ=60)

                                                                     ACCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTT                          <  SRR4302534.6183749/94‑1 (MQ=60)

                                                                      CCAGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTG                         <  SRR4302534.1463548/94‑1 (MQ=60)

                                                                        AGCAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTGGC                       >  SRR4302534.1147968/1‑94 (MQ=60)

                                                                          CAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTGGCGG                     >  SRR4302534.4547676/1‑94 (MQ=60)

                                                                          CAGCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTGGCGG                     <  SRR4302534.691155/94‑1 (MQ=60)

                                                                           AGCTGGCACGCGCCGCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTGGCGGT                    <  SRR4302534.9912/94‑1 (MQ=60)

                                                                            GCTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTGGCGGTG                   >  SRR4302534.4127490/1‑94 (MQ=60)

                                                                             CTGGCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTGGCGGTGG                  <  SRR4302534.4411004/94‑1 (MQ=60)

                                                                                GCACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTGGCGGTGGGGC               <  SRR4302534.1034519/94‑1 (MQ=60)

                                                                                 CACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTGGCGGTGGGGCA              <  SRR4302534.2449056/94‑1 (MQ=60)

                                                                                  ACGCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTGGCGGTGGGGCAA             <  SRR4302534.3660420/94‑1 (MQ=60)

                                                                                    GCGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTGGCGGTGGGGCAATC           <  SRR4302534.5101629/94‑1 (MQ=60)

                                                                                     CGCCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTGGCGGTGGGGCAATCG          >  SRR4302534.5689567/1‑94 (MQ=60)

                                                                                       CCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTGGCGGTGGGGCAATCGGT        >  SRR4302534.6354105/1‑94 (MQ=60)

                                                                                       CCTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTGGCGGTGGGGCAATCGGT        >  SRR4302534.4002879/1‑94 (MQ=60)

                                                                                        CTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTGGCGGTGGGGCAATCGGTG       >  SRR4302534.1015050/1‑94 (MQ=60)

                                                                                        CTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTGGCGGTGGGGCAATCGGTG       >  SRR4302534.776887/1‑94 (MQ=60)

                                                                                        CTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTGGCGGTGGGGCAATCGGTG       >  SRR4302534.2911036/1‑94 (MQ=60)

                                                                                        CTCGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTGGCGGTGGGGCAATCGGTG       >  SRR4302534.4657602/1‑94 (MQ=60)

                                                                                          CGGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTGGCGGTGGGGCAATCGGTGCC     >  SRR4302534.2145943/1‑94 (MQ=60)

                                                                                           GGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTGGCGGTGGGGCAATCGGTGCCG    >  SRR4302534.2146337/1‑94 (MQ=60)

                                                                                           GGGGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTGGCGGTGGGGCAATCGGTGCCG    >  SRR4302534.417523/1‑94 (MQ=60)

                                                                                             GGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTGGCGGTGGGGCAATCGGTGCCGCT  <  SRR4302534.259845/94‑1 (MQ=60)

                                                                                             GGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTGGCGGTGGGGCAATCGGTGCCGCT  <  SRR4302534.3492480/94‑1 (MQ=60)

GTCAGTTGACGTTACTGGATACCCCCGGGCCAAATGAAGCCGGGCAACCGCATCTGCAAAAAATGCTTAACCAGCAGCTGGCACGCGCCTCGGCGGTACTGGCGGTGCTGGATTATACGCAACTGAAATCGATCTCCGATGAAGAGGTCCGTGAGGCGATTTTGGCGGTGGGGCAATCGGTGCCGCT  >  NC_000913/4325401‑4325587

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 6 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`